RchiOBHm_Chr6g0281861

ATP-dependent RNA helicase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0002639
Physical Location & Seq
Reverse (-)
45184233 .. 45189772
5540 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ25282

Sequence Viewer

Length: 1836 bp
ATGCCTTGTTGCCAAAACCGGCTCGTCCAGGAGGTTTGGAAACATGATACCCTGATTATTGTTGGCGAAACTGGAAGCGGAAAAACAACGCAACTACCACAGTATTTGTACAATGCTGGATTTTGTGGAAATGGGAGAGTCATTGGGGTAACTCAACCTTGCTGTGTGGCGGCTGTGAATGCCGCGAAGCAGGTTGCTGAGGAATGTGGTGTTAGATTGGGTGAAACGGTTGGTTATTCCATCAGATTTCAGAATGTGACCTCTAGTTCAACAAGGATCAAGGAAGCGGTATCAGATCTATCTCTCTCTAGGTATTCAGCTATCATTGTGGATGAAGCTCATGAGAGAACTCTTGACACTGATGTATTGCTGGGTGTGCTGAAAAATGTACAAAATGCAAGGTCAGAATCTGTTGAATTGAAATTAATTATCATGTCCGCCAGCTTAGATGCTCGAATTTTCTCCGAATACTTTGGTGGTGCAAGAGCTATTCACATCCAAGGGAGACAGTTTCCTGTTGCTATATTTTGTACTTATCATCTTCCACCATCTTATTTACATGCTTCGTTCATTACCATATTTCAGATTCACCTGGAGGAAGAAGCTGGTGACATACTTGTCTTCTTGACTGGTAAAGACGAAATTGAATTCGTAGAGAGACTTATAGAAGAAAAACTTAAACAGTTACCGGAGAATAGTCAAAAACTAGTAGCGGTACCTTTATTTTCATCTCTTCCGTCAGAACAGCAAACGGGTCGTCTGACTGACTATCAGCGAGATGTTTTGTTACTAAAGATTGTTGAGCAACTTGAATCGATGGACACTCGGATTGAATCAATGGACGCTCAGCTCACCAAACTAGAAGGTCATGGGAAAGCTTTCACAACTAAGAAGGCAGATAAAAAAGAAGATACTATAGTCCAAGACACCAACAATGGCGACAAAGAAGAGACGGAGCACCAAAAGGGAGGTGGGGATGACAGTACCTTCGACTACAGAACTTATGAGCAATCTGATCTAGACGAAGACTTAGATAATTCATTTTGTTCTGTTGTTAAACACAATCTAGCACCTCCTGCAACTCAAGCTTCAAGTGCAACAGCTGTCTCAAGTTCTGCCGTTGATTGCCTCAAACTTCCAGAGCAGCCACACCCACAGCCATACAAGGCAACACATATCCTTCTTGGAAGACCATGGTTATCAGATCACGATGTGCACCCTTGCGGAAAGGTTGTCTCCAAGCCTATGAGGGCAGTTGACAGGGACAAATACATGAGAAGGACGCTCAAGGAACCTGATGCAACCAAGCTGAAAGTTCTTCATCTTCTTCTGTCCAAATGGTTTCAGATTGAGCCAGGTGGTTTCGGGCTGGGATTCTACACCTTTAACTCGCCGGATTGGCTTGCAGGGAGAGAAAGACCAGGGAAATGCTACTGTCTCTACCCAGAGAATGAATTTTGGAAACTTGAGGATTTGACAAAGCCAGATATCACGCGATGTGACCTCTCTAATGCCATTTTGCAACATAAGGCTTTGGGTGTTCATGATATCACTGGTTTCAACTTCATAGAAAAACCTTCAGGGGAATCTATTATAAAATTACTGGAGCAATTGACCCTGCTAGGTGCTTTGGCAGATGACCGTAAACTGTCAGATCCAGTTGGATGGCAAATGGCTGCCCTTCCCCTACCCCCTATTTATTCAAAAGCTCTAATTAAAGCAAGTGAACTCAACTGCCTGGAAGAGATGTTGATAACTGTTGCAATGCTCTCAGTAGAATCTACGTTTTTCACTCCCCGTGAGAAGTTAGAAGAGCCAAATTCTAGAAAGTGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000182 GO:0001817 GO:0001819 GO:0001932 GO:0001934 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003723 GO:0003724 GO:0003725 GO:0003729 GO:0003824 GO:0004004 GO:0004386 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005730 GO:0005737 GO:0005829 GO:0006139 GO:0006355 GO:0006356 GO:0006396 GO:0006412 GO:0006413 GO:0006518 GO:0006725 GO:0006807 GO:0008026 GO:0008134 GO:0008150 GO:0008152 GO:0008186 GO:0009058 GO:0009059 GO:0009889 GO:0009891 GO:0009893 GO:0009966 GO:0009967 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010562 GO:0010604 GO:0010628 GO:0010646 GO:0010647 GO:0016070 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019219 GO:0019220 GO:0019222 GO:0019538 GO:0023051 GO:0023056 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031334 GO:0031399 GO:0031401 GO:0031974 GO:0031981 GO:0032268 GO:0032270 GO:0032479 GO:0032481 GO:0032991 GO:0033613 GO:0034641 GO:0034645 GO:0042325 GO:0042327 GO:0042623 GO:0043021 GO:0043023 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043254 GO:0043408 GO:0043410 GO:0043484 GO:0043565 GO:0043603 GO:0043604 GO:0044087 GO:0044089 GO:0044093 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0044877 GO:0045893 GO:0045935 GO:0045937 GO:0045943 GO:0046483 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0050789 GO:0050794 GO:0051090 GO:0051091 GO:0051092 GO:0051128 GO:0051130 GO:0051171 GO:0051173 GO:0051174 GO:0051239 GO:0051240 GO:0051246 GO:0051247 GO:0051252 GO:0051254 GO:0060255 GO:0061702 GO:0065007 GO:0065009 GO:0070013 GO:0070035 GO:0071704 GO:0072559 GO:0080090 GO:0090304 GO:0097159 GO:0140098 GO:1900225 GO:1900227 GO:1901360 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1902531 GO:1902533 GO:1902680 GO:1903506 GO:1903508 GO:1990837 GO:2000112 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko03040 ko03050 ko05169 map03040 map03050 map05169
Pfam Domains
Protein Families
DEAD HA2 Helicase_C OB_NTP_bind

Protein Analysis

611

Amino Acids

68.28

Weight (kDa)

5.46

Isoelectric Point (pI)

39.13

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AAA_22 PF13401 18 - 150 9.4e-07 AAA domain
HA2_C PF21010 564 - 603 5e-08 Helicase associated domain (HA2), ratchet-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1595
AasI GACNNNNNNGTC 1 cut(s) 617
Acc36I ACCTGC 1 cut(s) 181
Acc65I GGTACC 1 cut(s) 715
AccB1I GGYRCC 1 cut(s) 715
AccII CGCG 2 cut(s) 185, 1495
AciI CCGC 7 cut(s) 78, 170, 183, 287, 438, 713, 1224
AclWI GGATC 2 cut(s) 284, 1649
AcsI RAATTY 4 cut(s) 456, 647, 1454, 1819
AcuI CTGAAG 1 cut(s) 1563
AdeI CACNNNGTG 1 cut(s) 1213
AfaI GTAC 5 cut(s) 110, 390, 532, 717, 985
AgsI TTSAA 9 cut(s) 270, 416, 421, 647, 812, 833, 1092, 1561, 1704
AhlI ACTAGT 1 cut(s) 706
AjnI CCWGG 5 cut(s) 27, 591, 1354, 1420, 1737
Alw21I GWGCWC 2 cut(s) 960, 1218
Alw26I GTCTC 6 cut(s) 499, 652, 944, 1111, 1240, 1442
Alw44I GTGCAC 1 cut(s) 1214
AlwI GGATC 2 cut(s) 284, 1649
AlwNI CAGNNNCTG 1 cut(s) 410
ApaLI GTGCAC 1 cut(s) 1214
ApeKI GCWGC 2 cut(s) 1144, 1676
ApoI RAATTY 4 cut(s) 456, 647, 1454, 1819
ArsI GACNNNNNNTTYG 4 cut(s) 742, 774, 971, 1003
AseI ATTAAT 1 cut(s) 425
Asp700I GAANNNNTTC 1 cut(s) 878
Asp718I GGTACC 1 cut(s) 715
AsuHPI GGTGA 4 cut(s) 233, 581, 620, 844
BaeGI GKGCMC 1 cut(s) 1218
BaeI ACNNNNGTAYC 2 cut(s) 903, 936
BanI GGYRCC 1 cut(s) 715
BbsI GAAGAC 3 cut(s) 613, 1032, 1195
Bbv12I GWGCWC 2 cut(s) 960, 1218
BbvCI CCTCAGC 1 cut(s) 198
BbvI GCAGC 2 cut(s) 1156, 1663
BccI CCATC 4 cut(s) 248, 556, 811, 1659
BceAI ACGGC 1 cut(s) 1103
BcgI CGANNNNNNTGC 2 cut(s) 737, 771
BciT130I CCWGG 5 cut(s) 29, 593, 1356, 1422, 1739
BcoDI GTCTC 6 cut(s) 499, 652, 944, 1111, 1240, 1442
BcuI ACTAGT 1 cut(s) 706
BfaI CTAG 8 cut(s) 264, 309, 707, 860, 1019, 1067, 1622, 1824
BfmI CTRYAG 2 cut(s) 915, 994
BfuAI ACCTGC 1 cut(s) 181
BglI GCCNNNNNGGC 1 cut(s) 1399
BglII AGATCT 1 cut(s) 295
BisI GCNGC 4 cut(s) 171, 183, 1145, 1677
BlpI GCTNAGC 1 cut(s) 846
BlsI GCNGC 4 cut(s) 172, 184, 1146, 1678
Bme1390I CCNGG 5 cut(s) 29, 593, 1356, 1422, 1739
BmiI GGNNCC 2 cut(s) 717, 1293
BmrFI CCNGG 5 cut(s) 29, 593, 1356, 1422, 1739
BmsI GCATC 2 cut(s) 439, 1288
BpiI GAAGAC 3 cut(s) 613, 1032, 1195
BpmI CTGGAG 2 cut(s) 614, 1625
Bpu10I CCTNAGC 1 cut(s) 198
Bpu1102I GCTNAGC 1 cut(s) 846
BpuEI CTTGAG 4 cut(s) 1068, 1093, 1271, 1487
Bsa29I ATCGAT 1 cut(s) 815
BsaJI CCNNGG 3 cut(s) 499, 1193, 1421
BsaWI WCCGGW 1 cut(s) 688
Bse118I RCCGGY 1 cut(s) 18
Bse1I ACTGG 5 cut(s) 76, 634, 1558, 1608, 1658
Bse3DI GCAATG 1 cut(s) 1770
BseBI CCWGG 5 cut(s) 29, 593, 1356, 1422, 1739
BseCI ATCGAT 1 cut(s) 815
BseDI CCNNGG 3 cut(s) 499, 1193, 1421
BseGI GGATG 4 cut(s) 337, 495, 982, 1670
BseMI GCAATG 1 cut(s) 1770
BseMII CTCAG 3 cut(s) 189, 860, 1785
BseNI ACTGG 5 cut(s) 76, 634, 1558, 1608, 1658
BseSI GKGCMC 1 cut(s) 1218
BseXI GCAGC 2 cut(s) 1156, 1663
BseYI CCCAGC 2 cut(s) 370, 1369
Bsh1236I CGCG 2 cut(s) 185, 1495
BshNI GGYRCC 1 cut(s) 715
BshVI ATCGAT 1 cut(s) 815
BsiHKAI GWGCWC 2 cut(s) 960, 1218
BsiSI CCGG 3 cut(s) 19, 689, 1394
BslFI GGGAC 1 cut(s) 1277
BsmAI GTCTC 6 cut(s) 499, 652, 944, 1111, 1240, 1442
BsmBI CGTCTC 1 cut(s) 944
BsmFI GGGAC 1 cut(s) 1277
BsmI GAATGC 1 cut(s) 184
Bsp1286I GDGCHC 2 cut(s) 960, 1218
Bsp1407I TGTACA 2 cut(s) 108, 388
Bsp143I GATC 5 cut(s) 276, 295, 1015, 1204, 1654
Bsp1720I GCTNAGC 1 cut(s) 846
Bsp19I CCATGG 1 cut(s) 1193
BspACI CCGC 7 cut(s) 78, 170, 183, 287, 438, 713, 1224
BspCNI CTCAG 3 cut(s) 190, 859, 1784
BspDI ATCGAT 1 cut(s) 815
BspFNI CGCG 2 cut(s) 185, 1495
BspHI TCATGA 2 cut(s) 340, 1543
BspLI GGNNCC 2 cut(s) 717, 1293
BspMI ACCTGC 1 cut(s) 181
BspPI GGATC 2 cut(s) 284, 1649
BspQI GCTCTTC 1 cut(s) 1806
BspT107I GGYRCC 1 cut(s) 715
BsrDI GCAATG 1 cut(s) 1770
BsrFI RCCGGY 1 cut(s) 18
BsrGI TGTACA 2 cut(s) 108, 388
BsrI ACTGG 5 cut(s) 76, 634, 1558, 1608, 1658
BssAI RCCGGY 1 cut(s) 18
BssECI CCNNGG 3 cut(s) 499, 1193, 1421
BssMI GATC 5 cut(s) 276, 295, 1015, 1204, 1654
BssT1I CCWWGG 2 cut(s) 499, 1193
Bst2UI CCWGG 5 cut(s) 29, 593, 1356, 1422, 1739
Bst4CI ACNGT 9 cut(s) 102, 229, 510, 684, 983, 1436, 1643, 1650, 1759
Bst6I CTCTTC 4 cut(s) 738, 942, 1737, 1806
BstAPI GCANNNNNTGC 1 cut(s) 1076
BstAUI TGTACA 2 cut(s) 108, 388
BstC8I GCNNGC 2 cut(s) 442, 1404
BstDEI CTNAG 6 cut(s) 198, 445, 846, 888, 1030, 1771
BstDSI CCRYGG 1 cut(s) 1193
BstF5I GGATG 4 cut(s) 337, 495, 982, 1670
BstFNI CGCG 2 cut(s) 185, 1495
BstKTI GATC 5 cut(s) 279, 298, 1018, 1207, 1657
BstMAI GTCTC 6 cut(s) 499, 652, 944, 1111, 1240, 1442
BstMBI GATC 5 cut(s) 276, 295, 1015, 1204, 1654
BstMWI GCNNNNNNNGC 6 cut(s) 179, 376, 1076, 1085, 1094, 1399
BstNI CCWGG 5 cut(s) 29, 593, 1356, 1422, 1739
BstNSI RCATGY 1 cut(s) 563
BstSCI CCNGG 5 cut(s) 27, 591, 1354, 1420, 1737
BstSFI CTRYAG 2 cut(s) 915, 994
BstSLI GKGCMC 1 cut(s) 1218
BstUI CGCG 2 cut(s) 185, 1495
BstV1I GCAGC 2 cut(s) 1156, 1663
BstV2I GAAGAC 3 cut(s) 613, 1032, 1195
BstX2I RGATCY 2 cut(s) 295, 1654
BstXI CCANNNNNNTGG 1 cut(s) 1665
BstYI RGATCY 2 cut(s) 295, 1654
Bsu15I ATCGAT 1 cut(s) 815
BsuTUI ATCGAT 1 cut(s) 815
BtgI CCRYGG 1 cut(s) 1193
BtgZI GCGATG 1 cut(s) 1510
BtsCI GGATG 4 cut(s) 337, 495, 982, 1670
BtsIMutI CAGTG 2 cut(s) 357, 1551
BveI ACCTGC 1 cut(s) 181
Cac8I GCNNGC 2 cut(s) 442, 1404
CaiI CAGNNNCTG 1 cut(s) 410
CciI TCATGA 2 cut(s) 340, 1543
Cfr10I RCCGGY 1 cut(s) 18
ClaI ATCGAT 1 cut(s) 815
CseI GACGC 2 cut(s) 851, 1291
Csp6I GTAC 5 cut(s) 109, 389, 531, 716, 984
CspCI CAANNNNNGTGG 2 cut(s) 87, 122
CviAII CATG 8 cut(s) 44, 341, 433, 560, 869, 1194, 1273, 1544
CviQI GTAC 5 cut(s) 109, 389, 531, 716, 984
DdeI CTNAG 6 cut(s) 198, 445, 846, 888, 1030, 1771
DpnI GATC 5 cut(s) 278, 297, 1017, 1206, 1656
DpnII GATC 5 cut(s) 276, 295, 1015, 1204, 1654
DraIII CACNNNGTG 1 cut(s) 1213
DrdI GACNNNNNNGTC 1 cut(s) 617
DseDI GACNNNNNNGTC 1 cut(s) 617
Eam1104I CTCTTC 4 cut(s) 738, 942, 1737, 1806
EarI CTCTTC 4 cut(s) 738, 942, 1737, 1806
EciI GGCGGA 1 cut(s) 427
Eco130I CCWWGG 2 cut(s) 499, 1193
Eco32I GATATC 2 cut(s) 1489, 1549
Eco57I CTGAAG 1 cut(s) 1563
EcoRI GAATTC 1 cut(s) 647
EcoRII CCWGG 5 cut(s) 27, 591, 1354, 1420, 1737
EcoRV GATATC 2 cut(s) 1489, 1549
EcoT14I CCWWGG 2 cut(s) 499, 1193
ErhI CCWWGG 2 cut(s) 499, 1193
Esp3I CGTCTC 1 cut(s) 944
FaeI CATG 8 cut(s) 47, 344, 436, 563, 872, 1197, 1276, 1547
FalI AAGNNNNNCTT 2 cut(s) 660, 692
FaqI GGGAC 1 cut(s) 1277
FatI CATG 8 cut(s) 43, 340, 432, 559, 868, 1193, 1272, 1543
Fnu4HI GCNGC 4 cut(s) 171, 183, 1145, 1677
FokI GGATG 4 cut(s) 344, 482, 989, 1677
Fsp4HI GCNGC 4 cut(s) 171, 183, 1145, 1677
FspBI CTAG 8 cut(s) 264, 309, 707, 860, 1019, 1067, 1622, 1824
GluI GCNGC 4 cut(s) 171, 183, 1145, 1677
GsaI CCCAGC 2 cut(s) 374, 1373
GsuI CTGGAG 2 cut(s) 614, 1625
HapII CCGG 3 cut(s) 19, 689, 1394
HgaI GACGC 2 cut(s) 851, 1291
Hin1II CATG 8 cut(s) 47, 344, 436, 563, 872, 1197, 1276, 1547
HincII GTYRAC 1 cut(s) 1258
HindII GTYRAC 1 cut(s) 1258
HindIII AAGCTT 2 cut(s) 876, 1086
HinfI GANTC 8 cut(s) 138, 407, 586, 812, 833, 1374, 1586, 1778
HpaII CCGG 3 cut(s) 19, 689, 1394
HphI GGTGA 4 cut(s) 233, 581, 620, 844
Hpy166II GTNNAC 4 cut(s) 1216, 1258, 1646, 1727
Hpy188III TCNNGA 8 cut(s) 341, 353, 625, 1019, 1139, 1208, 1544, 1824
Hpy8I GTNNAC 4 cut(s) 1216, 1258, 1646, 1727
HpyAV CCTTC 7 cut(s) 857, 886, 997, 1190, 1272, 1587, 1691
HpyCH4III ACNGT 9 cut(s) 102, 229, 510, 684, 983, 1436, 1643, 1650, 1759
HpyCH4IV ACGT 1 cut(s) 1784
HpyCH4V TGCA 9 cut(s) 398, 482, 1079, 1097, 1216, 1301, 1406, 1522, 1763
HpyF10VI GCNNNNNNNGC 6 cut(s) 179, 376, 1076, 1085, 1094, 1399
HpyF3I CTNAG 6 cut(s) 198, 445, 846, 888, 1030, 1771
HpySE526I ACGT 1 cut(s) 1784
Hsp92II CATG 8 cut(s) 47, 344, 436, 563, 872, 1197, 1276, 1547
KpnI GGTACC 1 cut(s) 719
Kzo9I GATC 5 cut(s) 276, 295, 1015, 1204, 1654
LguI GCTCTTC 1 cut(s) 1806
LmnI GCTCC 2 cut(s) 955, 1606
Lsp1109I GCAGC 2 cut(s) 1156, 1663
LweI GCATC 2 cut(s) 439, 1288
MaeI CTAG 8 cut(s) 264, 309, 707, 860, 1019, 1067, 1622, 1824
MaeII ACGT 1 cut(s) 1784
MaeIII GTNAC 6 cut(s) 148, 256, 608, 684, 786, 1499
MalI GATC 5 cut(s) 278, 297, 1017, 1206, 1656
MboI GATC 5 cut(s) 276, 295, 1015, 1204, 1654
MfeI CAATTG 1 cut(s) 1610
MflI RGATCY 2 cut(s) 295, 1654
MhlI GDGCHC 2 cut(s) 960, 1218
MlyI GAGTC 1 cut(s) 147
MmeI TCCRAC 1 cut(s) 1642
MroXI GAANNNNTTC 1 cut(s) 878
MseI TTAA 5 cut(s) 425, 678, 1056, 1386, 1716
MspA1I CMGCKG 1 cut(s) 1103
MspI CCGG 3 cut(s) 19, 689, 1394
MspR9I CCNGG 5 cut(s) 29, 593, 1356, 1422, 1739
MunI CAATTG 1 cut(s) 1610
Mva1269I GAATGC 1 cut(s) 184
MvaI CCWGG 5 cut(s) 29, 593, 1356, 1422, 1739
MvnI CGCG 2 cut(s) 185, 1495
MwoI GCNNNNNNNGC 6 cut(s) 179, 376, 1076, 1085, 1094, 1399
NcoI CCATGG 1 cut(s) 1193
NdeII GATC 5 cut(s) 276, 295, 1015, 1204, 1654
NlaIII CATG 8 cut(s) 47, 344, 436, 563, 872, 1197, 1276, 1547
NlaIV GGNNCC 2 cut(s) 717, 1293
NmuCI GTSAC 3 cut(s) 256, 608, 1499
NspI RCATGY 1 cut(s) 563
PagI TCATGA 2 cut(s) 340, 1543
PciSI GCTCTTC 1 cut(s) 1806
PctI GAATGC 1 cut(s) 184
PdmI GAANNNNTTC 1 cut(s) 878
PfeI GAWTC 7 cut(s) 407, 586, 812, 833, 1374, 1586, 1778
PfoI TCCNGGA 1 cut(s) 27
PkrI GCNGC 4 cut(s) 172, 184, 1146, 1678
PleI GAGTC 1 cut(s) 146
PpsI GAGTC 1 cut(s) 146
PshBI ATTAAT 1 cut(s) 425
PsiI TTATAA 1 cut(s) 1595
Psp6I CCWGG 5 cut(s) 27, 591, 1354, 1420, 1737
PspFI CCCAGC 2 cut(s) 370, 1369
PspGI CCWGG 5 cut(s) 27, 591, 1354, 1420, 1737
PspN4I GGNNCC 2 cut(s) 717, 1293
PstNI CAGNNNCTG 1 cut(s) 410
PsuI RGATCY 2 cut(s) 295, 1654
PvuII CAGCTG 1 cut(s) 1103
RsaI GTAC 5 cut(s) 110, 390, 532, 717, 985
RsaNI GTAC 5 cut(s) 109, 389, 531, 716, 984
SapI GCTCTTC 1 cut(s) 1806
SaqAI TTAA 5 cut(s) 425, 678, 1056, 1386, 1716
SatI GCNGC 4 cut(s) 171, 183, 1145, 1677
Sau3AI GATC 5 cut(s) 276, 295, 1015, 1204, 1654
SchI GAGTC 1 cut(s) 147
ScrFI CCNGG 5 cut(s) 29, 593, 1356, 1422, 1739
SduI GDGCHC 2 cut(s) 960, 1218
SfaNI GCATC 2 cut(s) 439, 1288
SfcI CTRYAG 2 cut(s) 915, 994
SmlI CTYRAG 4 cut(s) 1083, 1108, 1286, 1466
SmoI CTYRAG 4 cut(s) 1083, 1108, 1286, 1466
SpeI ACTAGT 1 cut(s) 706
SsiI CCGC 7 cut(s) 78, 170, 183, 287, 438, 713, 1224
SspMI CTAG 8 cut(s) 264, 309, 707, 860, 1019, 1067, 1622, 1824
StyD4I CCNGG 5 cut(s) 27, 591, 1354, 1420, 1737
StyI CCWWGG 2 cut(s) 499, 1193
TaaI ACNGT 9 cut(s) 102, 229, 510, 684, 983, 1436, 1643, 1650, 1759
TaiI ACGT 1 cut(s) 1787
TaqI TCGA 3 cut(s) 454, 815, 990
TatI WGTACW 3 cut(s) 108, 388, 530
TauI GCSGC 2 cut(s) 173, 185
TfiI GAWTC 7 cut(s) 407, 586, 812, 833, 1374, 1586, 1778
Tru1I TTAA 5 cut(s) 425, 678, 1056, 1386, 1716
Tru9I TTAA 5 cut(s) 425, 678, 1056, 1386, 1716
TscAI CASTG 2 cut(s) 364, 1558
TseFI GTSAC 3 cut(s) 256, 608, 1499
TseI GCWGC 2 cut(s) 1144, 1676
Tsp45I GTSAC 3 cut(s) 256, 608, 1499
TspDTI ATGAA 8 cut(s) 348, 559, 717, 1029, 1310, 1467, 1532, 1555
TspGWI ACGGA 2 cut(s) 726, 968
TspRI CASTG 2 cut(s) 364, 1558
VneI GTGCAC 1 cut(s) 1214
VspI ATTAAT 1 cut(s) 425
XapI RAATTY 4 cut(s) 456, 647, 1454, 1819
XbaI TCTAGA 2 cut(s) 1018, 1823
XceI RCATGY 1 cut(s) 563
XcmI CCANNNNNNNNNTGG 1 cut(s) 968
XmnI GAANNNNTTC 1 cut(s) 878
XspI CTAG 8 cut(s) 264, 309, 707, 860, 1019, 1067, 1622, 1824
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.