Rorug06G0144200

ATP-dependent RNA helicase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0002639
Physical Location & Seq
Forward (+)
20547350 .. 20547634
285 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0144200.1

Sequence Viewer

Length: 285 bp
ATGGGAGTCATTTTTCGCGATTCGGAAGGTGAAGTGGTGGCTGGTGGGTGTCGGTATGTGAGTGAGGTTTCATCTGCTGAGGAGGTCGAGATGAGAGCCAGCAGATGGGCATGTCAATTGGCTGTTACCCATCAGTTGACTCCGATTATCTTCGAATCCGATTGCTTGACTTTGGTTCAGGCTACCAAAGATCAGAGTGGCAATCTGTCACTTCTTGGTCGTCTGGTGGATGACATTGTAGACTCCTTGCACTCTGCCAGGGGCTTACTTTGCCCACATTTATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000182 GO:0001817 GO:0001819 GO:0001932 GO:0001934 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003723 GO:0003724 GO:0003725 GO:0003729 GO:0003824 GO:0004004 GO:0004386 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005730 GO:0005737 GO:0005829 GO:0006139 GO:0006355 GO:0006356 GO:0006396 GO:0006412 GO:0006413 GO:0006518 GO:0006725 GO:0006807 GO:0008026 GO:0008134 GO:0008150 GO:0008152 GO:0008186 GO:0009058 GO:0009059 GO:0009889 GO:0009891 GO:0009893 GO:0009966 GO:0009967 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010562 GO:0010604 GO:0010628 GO:0010646 GO:0010647 GO:0016070 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019219 GO:0019220 GO:0019222 GO:0019538 GO:0023051 GO:0023056 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031334 GO:0031399 GO:0031401 GO:0031974 GO:0031981 GO:0032268 GO:0032270 GO:0032479 GO:0032481 GO:0032991 GO:0033613 GO:0034641 GO:0034645 GO:0042325 GO:0042327 GO:0042623 GO:0043021 GO:0043023 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043254 GO:0043408 GO:0043410 GO:0043484 GO:0043565 GO:0043603 GO:0043604 GO:0044087 GO:0044089 GO:0044093 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0044877 GO:0045893 GO:0045935 GO:0045937 GO:0045943 GO:0046483 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0050789 GO:0050794 GO:0051090 GO:0051091 GO:0051092 GO:0051128 GO:0051130 GO:0051171 GO:0051173 GO:0051174 GO:0051239 GO:0051240 GO:0051246 GO:0051247 GO:0051252 GO:0051254 GO:0060255 GO:0061702 GO:0065007 GO:0065009 GO:0070013 GO:0070035 GO:0071704 GO:0072559 GO:0080090 GO:0090304 GO:0097159 GO:0140098 GO:1900225 GO:1900227 GO:1901360 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1902531 GO:1902533 GO:1902680 GO:1903506 GO:1903508 GO:1990837 GO:2000112 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko03040 ko03050 ko05169 map03040 map03050 map05169
Pfam Domains
Protein Families
DEAD HA2 Helicase_C OB_NTP_bind

Protein Analysis

94

Amino Acids

10.2

Weight (kDa)

4.79

Isoelectric Point (pI)

36.94

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RVT_3 PF13456 2 - 84 1.1e-14 Reverse transcriptase-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 105
AccI GTMKAC 1 cut(s) 240
AccII CGCG 1 cut(s) 18
AfiI CCNNNNNNNGG 1 cut(s) 105
AjnI CCWGG 1 cut(s) 257
AsuHPI GGTGA 1 cut(s) 41
AsuII TTCGAA 1 cut(s) 153
BbvCI CCTCAGC 1 cut(s) 78
BccI CCATC 2 cut(s) 99, 138
BciT130I CCWGG 1 cut(s) 259
Bme1390I CCNGG 1 cut(s) 259
BmrFI CCNGG 1 cut(s) 259
Bpu10I CCTNAGC 1 cut(s) 78
Bpu14I TTCGAA 1 cut(s) 153
BsaJI CCNNGG 1 cut(s) 258
Bsc4I CCNNNNNNNGG 1 cut(s) 105
BseBI CCWGG 1 cut(s) 259
BseDI CCNNGG 1 cut(s) 258
BseGI GGATG 1 cut(s) 235
BseLI CCNNNNNNNGG 1 cut(s) 105
BseMII CTCAG 1 cut(s) 69
BseRI GAGGAG 1 cut(s) 95
Bsh1236I CGCG 1 cut(s) 18
BslI CCNNNNNNNGG 1 cut(s) 105
Bsp119I TTCGAA 1 cut(s) 153
Bsp143I GATC 1 cut(s) 190
Bsp68I TCGCGA 1 cut(s) 18
BspCNI CTCAG 1 cut(s) 70
BspFNI CGCG 1 cut(s) 18
BspT104I TTCGAA 1 cut(s) 153
BssECI CCNNGG 1 cut(s) 258
BssMI GATC 1 cut(s) 190
Bst2UI CCWGG 1 cut(s) 259
BstBI TTCGAA 1 cut(s) 153
BstC8I GCNNGC 1 cut(s) 100
BstDEI CTNAG 1 cut(s) 78
BstF5I GGATG 1 cut(s) 235
BstFNI CGCG 1 cut(s) 18
BstKTI GATC 1 cut(s) 193
BstMBI GATC 1 cut(s) 190
BstMWI GCNNNNNNNGC 1 cut(s) 270
BstNI CCWGG 1 cut(s) 259
BstNSI RCATGY 1 cut(s) 114
BstSCI CCNGG 1 cut(s) 257
BstUI CGCG 1 cut(s) 18
BtsCI GGATG 1 cut(s) 235
BtuMI TCGCGA 1 cut(s) 18
Cac8I GCNNGC 1 cut(s) 100
CviAII CATG 1 cut(s) 111
CviJI RGCY 5 cut(s) 41, 98, 122, 182, 264
CviKI_1 RGCY 5 cut(s) 41, 98, 122, 182, 264
DdeI CTNAG 1 cut(s) 78
DpnI GATC 1 cut(s) 192
DpnII GATC 1 cut(s) 190
EcoRII CCWGG 1 cut(s) 257
FaeI CATG 1 cut(s) 114
FaiI YATR 3 cut(s) 57, 112, 283
FatI CATG 1 cut(s) 110
FblI GTMKAC 1 cut(s) 240
FokI GGATG 1 cut(s) 242
Hin1II CATG 1 cut(s) 114
HincII GTYRAC 1 cut(s) 138
HindII GTYRAC 1 cut(s) 138
HinfI GANTC 5 cut(s) 6, 20, 139, 155, 242
HphI GGTGA 1 cut(s) 41
Hpy166II GTNNAC 2 cut(s) 138, 241
Hpy188I TCNGA 4 cut(s) 25, 144, 160, 195
Hpy188III TCNNGA 2 cut(s) 17, 88
Hpy8I GTNNAC 2 cut(s) 138, 241
HpyAV CCTTC 1 cut(s) 20
HpyCH4V TGCA 1 cut(s) 250
HpyF10VI GCNNNNNNNGC 1 cut(s) 270
HpyF3I CTNAG 1 cut(s) 78
Hsp92II CATG 1 cut(s) 114
Kzo9I GATC 1 cut(s) 190
LpnPI CCDG 6 cut(s) 27, 112, 164, 209, 244, 271
MaeIII GTNAC 2 cut(s) 124, 207
MalI GATC 1 cut(s) 192
MboI GATC 1 cut(s) 190
MboII GAAGA 1 cut(s) 142
MfeI CAATTG 1 cut(s) 116
MluCI AATT 1 cut(s) 116
MlyI GAGTC 3 cut(s) 15, 133, 236
MnlI CCTC 3 cut(s) 58, 73, 76
MspR9I CCNGG 1 cut(s) 259
MunI CAATTG 1 cut(s) 116
MvaI CCWGG 1 cut(s) 259
MvnI CGCG 1 cut(s) 18
MwoI GCNNNNNNNGC 1 cut(s) 270
NdeII GATC 1 cut(s) 190
NlaIII CATG 1 cut(s) 114
NmuCI GTSAC 1 cut(s) 207
NruI TCGCGA 1 cut(s) 18
NspI RCATGY 1 cut(s) 114
NspV TTCGAA 1 cut(s) 153
PfeI GAWTC 2 cut(s) 20, 155
PflMI CCANNNNNTGG 1 cut(s) 105
PleI GAGTC 3 cut(s) 14, 133, 236
PpsI GAGTC 3 cut(s) 14, 133, 236
Psp6I CCWGG 1 cut(s) 257
PspGI CCWGG 1 cut(s) 257
RruI TCGCGA 1 cut(s) 18
Sau3AI GATC 1 cut(s) 190
SchI GAGTC 3 cut(s) 15, 133, 236
ScrFI CCNGG 1 cut(s) 259
SetI ASST 3 cut(s) 31, 69, 87
SfuI TTCGAA 1 cut(s) 153
Sse9I AATT 1 cut(s) 116
StyD4I CCNGG 1 cut(s) 257
TaqI TCGA 2 cut(s) 87, 153
TasI AATT 1 cut(s) 116
TfiI GAWTC 2 cut(s) 20, 155
TseFI GTSAC 1 cut(s) 207
Tsp45I GTSAC 1 cut(s) 207
TspDTI ATGAA 1 cut(s) 60
Van91I CCANNNNNTGG 1 cut(s) 105
XceI RCATGY 1 cut(s) 114
XmiI GTMKAC 1 cut(s) 240
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.