Rh6AG257300

ATP-dependent RNA helicase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
OG0002639
Physical Location & Seq
Reverse (-)
44748333 .. 44749742
1410 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG257300.1

Sequence Viewer

Length: 861 bp
ATGTTGGATTGCACTTTCAGGGAAGCGGTATCAGATCCATCTCTCTCTAGGTATTCAGCTATCATTGTGGATGAAGCTCATGAGAGAACTCTTGACACTGATGTATTACTGGGTGTGCTGAAAAATGTACAAAATGCAAGGTCAGAATCTGTTGAATTGAAATTAATTATCATGTCCGCCAGCTTAGATGCTCGAATTTTCTCCGAATACTTTGGTGGTGCAAGAGCTGTTCACATCCAAGGGAGACAGTTTCCTGTTGCTATATTTTATACTTATCATCTTCCACCATCTTATTTACATGCTTCGTTCATTACCATATTTCAGATTCACCTGGAGGAAGAAGCTGGTGACATACTTGTCTTCTTGACGGGTAAAGACGAAATTGAATTCGTAGAAAGACTTATAGAAGAAAAACTTAAACAGTTACCGGAGAATAGTCAAAAACTAGTAGCGGTACCTTTATTTTCATCTCTTCCGTCAGAACAGCAAATGCGAGCTTTTGCACCAGCCTGTCCTGGGTTTCGTAAGGTAGTTTTGGCAACCAATATTGCTGAGACGTCAGTGACAATACCTGGAATCAAGTATGTTATAGACACTGGGGTTGTAAAAGCACACTTCTATAATCCAAACAAAGGGTTGGAACCTTTGATTGTTGTTCCAATTTCGAAAGCACAGGCTCTACAAAGGAGTTGGCTTGCAGGGAGAGAAAGACCAGGGAAATGCTTCTGTCTCTACCCAGAGAATGAATTTTGGAAACTTGAGGATTTGACAAAGCCAGATATCACGCGATGCGACCTCTCTAATGCCATTTTGCAACTTAAGGCTTTGGGTGTTCATGATATCACTGGTTTGACTTCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000182 GO:0001817 GO:0001819 GO:0001932 GO:0001934 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003723 GO:0003724 GO:0003725 GO:0003729 GO:0003824 GO:0004004 GO:0004386 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005730 GO:0005737 GO:0005829 GO:0006139 GO:0006355 GO:0006356 GO:0006396 GO:0006412 GO:0006413 GO:0006518 GO:0006725 GO:0006807 GO:0008026 GO:0008134 GO:0008150 GO:0008152 GO:0008186 GO:0009058 GO:0009059 GO:0009889 GO:0009891 GO:0009893 GO:0009966 GO:0009967 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010562 GO:0010604 GO:0010628 GO:0010646 GO:0010647 GO:0016070 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019219 GO:0019220 GO:0019222 GO:0019538 GO:0023051 GO:0023056 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031334 GO:0031399 GO:0031401 GO:0031974 GO:0031981 GO:0032268 GO:0032270 GO:0032479 GO:0032481 GO:0032991 GO:0033613 GO:0034641 GO:0034645 GO:0042325 GO:0042327 GO:0042623 GO:0043021 GO:0043023 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043254 GO:0043408 GO:0043410 GO:0043484 GO:0043565 GO:0043603 GO:0043604 GO:0044087 GO:0044089 GO:0044093 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0044877 GO:0045893 GO:0045935 GO:0045937 GO:0045943 GO:0046483 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0050789 GO:0050794 GO:0051090 GO:0051091 GO:0051092 GO:0051128 GO:0051130 GO:0051171 GO:0051173 GO:0051174 GO:0051239 GO:0051240 GO:0051246 GO:0051247 GO:0051252 GO:0051254 GO:0060255 GO:0061702 GO:0065007 GO:0065009 GO:0070013 GO:0070035 GO:0071704 GO:0072559 GO:0080090 GO:0090304 GO:0097159 GO:0140098 GO:1900225 GO:1900227 GO:1901360 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1902531 GO:1902533 GO:1902680 GO:1903506 GO:1903508 GO:1990837 GO:2000112 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko03040 ko03050 ko05169 map03040 map03050 map05169
Pfam Domains
Protein Families
DEAD HA2 Helicase_C OB_NTP_bind

Protein Analysis

286

Amino Acids

31.99

Weight (kDa)

5.7

Isoelectric Point (pI)

47.17

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Helicase_C PF00271 108 - 202 9.2e-09 Helicase conserved C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 356
AatII GACGTC 1 cut(s) 560
Acc65I GGTACC 1 cut(s) 454
AccB1I GGYRCC 1 cut(s) 454
AccII CGCG 1 cut(s) 787
AciI CCGC 3 cut(s) 26, 177, 452
AclWI GGATC 1 cut(s) 29
AcsI RAATTY 3 cut(s) 195, 386, 746
AcyI GRCGYC 1 cut(s) 557
AfaI GTAC 2 cut(s) 129, 456
AfiI CCNNNNNNNGG 2 cut(s) 516, 632
AflII CTTAAG 1 cut(s) 818
AgsI TTSAA 3 cut(s) 155, 160, 386
AhlI ACTAGT 1 cut(s) 445
AjnI CCWGG 4 cut(s) 330, 514, 571, 712
AluBI AGCT 6 cut(s) 59, 77, 183, 227, 344, 497
AluI AGCT 6 cut(s) 59, 77, 183, 227, 344, 497
Alw26I GTCTC 3 cut(s) 238, 548, 734
AlwI GGATC 1 cut(s) 29
AlwNI CAGNNNCTG 1 cut(s) 149
ApoI RAATTY 3 cut(s) 195, 386, 746
AseI ATTAAT 1 cut(s) 164
Asp700I GAANNNNTTC 1 cut(s) 722
Asp718I GGTACC 1 cut(s) 454
AsuHPI GGTGA 2 cut(s) 320, 359
AsuII TTCGAA 1 cut(s) 665
BanI GGYRCC 1 cut(s) 454
BbsI GAAGAC 1 cut(s) 352
BccI CCATC 2 cut(s) 46, 295
BciT130I CCWGG 4 cut(s) 332, 516, 573, 714
BcoDI GTCTC 3 cut(s) 238, 548, 734
BcuI ACTAGT 1 cut(s) 445
BfaI CTAG 2 cut(s) 48, 446
BfrI CTTAAG 1 cut(s) 818
Bme1390I CCNGG 4 cut(s) 332, 516, 573, 714
BmiI GGNNCC 2 cut(s) 456, 642
BmrFI CCNGG 4 cut(s) 332, 516, 573, 714
BmrI ACTGGG 2 cut(s) 119, 606
BmsI GCATC 2 cut(s) 178, 779
BmuI ACTGGG 2 cut(s) 119, 606
BpiI GAAGAC 1 cut(s) 352
BpmI CTGGAG 1 cut(s) 353
Bpu14I TTCGAA 1 cut(s) 665
BpuEI CTTGAG 1 cut(s) 779
BsaHI GRCGYC 1 cut(s) 557
BsaJI CCNNGG 3 cut(s) 238, 515, 713
BsaWI WCCGGW 1 cut(s) 427
Bsc4I CCNNNNNNNGG 2 cut(s) 516, 632
Bse1I ACTGG 3 cut(s) 114, 601, 850
BseBI CCWGG 4 cut(s) 332, 516, 573, 714
BseDI CCNNGG 3 cut(s) 238, 515, 713
BseGI GGATG 2 cut(s) 76, 234
BseLI CCNNNNNNNGG 2 cut(s) 516, 632
BseMII CTCAG 1 cut(s) 543
BseNI ACTGG 3 cut(s) 114, 601, 850
Bsh1236I CGCG 1 cut(s) 787
BshNI GGYRCC 1 cut(s) 454
BsiSI CCGG 1 cut(s) 428
BslI CCNNNNNNNGG 2 cut(s) 516, 632
BsmAI GTCTC 3 cut(s) 238, 548, 734
BsmBI CGTCTC 1 cut(s) 548
Bsp119I TTCGAA 1 cut(s) 665
Bsp1407I TGTACA 1 cut(s) 127
Bsp143I GATC 1 cut(s) 34
BspACI CCGC 3 cut(s) 26, 177, 452
BspCNI CTCAG 1 cut(s) 544
BspFNI CGCG 1 cut(s) 787
BspHI TCATGA 2 cut(s) 79, 835
BspLI GGNNCC 2 cut(s) 456, 642
BspPI GGATC 1 cut(s) 29
BspT104I TTCGAA 1 cut(s) 665
BspT107I GGYRCC 1 cut(s) 454
BspTI CTTAAG 1 cut(s) 818
BsrGI TGTACA 1 cut(s) 127
BsrI ACTGG 3 cut(s) 114, 601, 850
BssECI CCNNGG 3 cut(s) 238, 515, 713
BssMI GATC 1 cut(s) 34
BssNI GRCGYC 1 cut(s) 557
BssT1I CCWWGG 1 cut(s) 238
Bst2UI CCWGG 4 cut(s) 332, 516, 573, 714
Bst4CI ACNGT 2 cut(s) 249, 423
Bst6I CTCTTC 1 cut(s) 477
BstACI GRCGYC 1 cut(s) 557
BstAFI CTTAAG 1 cut(s) 818
BstAUI TGTACA 1 cut(s) 127
BstBI TTCGAA 1 cut(s) 665
BstC8I GCNNGC 3 cut(s) 181, 495, 696
BstDEI CTNAG 2 cut(s) 184, 552
BstF5I GGATG 2 cut(s) 76, 234
BstFNI CGCG 1 cut(s) 787
BstKTI GATC 1 cut(s) 37
BstMAI GTCTC 3 cut(s) 238, 548, 734
BstMBI GATC 1 cut(s) 34
BstNI CCWGG 4 cut(s) 332, 516, 573, 714
BstNSI RCATGY 1 cut(s) 302
BstSCI CCNGG 4 cut(s) 330, 514, 571, 712
BstUI CGCG 1 cut(s) 787
BstV2I GAAGAC 1 cut(s) 352
BstX2I RGATCY 1 cut(s) 34
BstYI RGATCY 1 cut(s) 34
BtgZI GCGATG 1 cut(s) 802
BtsCI GGATG 2 cut(s) 76, 234
BtsIMutI CAGTG 4 cut(s) 96, 567, 594, 843
Cac8I GCNNGC 3 cut(s) 181, 495, 696
CaiI CAGNNNCTG 1 cut(s) 149
CciI TCATGA 2 cut(s) 79, 835
Csp6I GTAC 2 cut(s) 128, 455
CviAII CATG 4 cut(s) 80, 172, 299, 836
CviQI GTAC 2 cut(s) 128, 455
DdeI CTNAG 2 cut(s) 184, 552
DpnI GATC 1 cut(s) 36
DpnII GATC 1 cut(s) 34
DrdI GACNNNNNNGTC 1 cut(s) 356
DseDI GACNNNNNNGTC 1 cut(s) 356
Eam1104I CTCTTC 1 cut(s) 477
EarI CTCTTC 1 cut(s) 477
EciI GGCGGA 1 cut(s) 166
Eco130I CCWWGG 1 cut(s) 238
Eco32I GATATC 2 cut(s) 781, 841
EcoRI GAATTC 1 cut(s) 386
EcoRII CCWGG 4 cut(s) 330, 514, 571, 712
EcoRV GATATC 2 cut(s) 781, 841
EcoT14I CCWWGG 1 cut(s) 238
ErhI CCWWGG 1 cut(s) 238
Esp3I CGTCTC 1 cut(s) 548
FaeI CATG 4 cut(s) 83, 175, 302, 839
FalI AAGNNNNNCTT 2 cut(s) 399, 431
FatI CATG 4 cut(s) 79, 171, 298, 835
FokI GGATG 2 cut(s) 83, 221
FspBI CTAG 2 cut(s) 48, 446
GsuI CTGGAG 1 cut(s) 353
HapII CCGG 1 cut(s) 428
Hin1I GRCGYC 1 cut(s) 557
Hin1II CATG 4 cut(s) 83, 175, 302, 839
HinfI GANTC 3 cut(s) 146, 325, 576
HpaII CCGG 1 cut(s) 428
HphI GGTGA 2 cut(s) 320, 359
Hpy166II GTNNAC 1 cut(s) 232
Hpy188I TCNGA 5 cut(s) 34, 145, 205, 324, 481
Hpy188III TCNNGA 4 cut(s) 80, 92, 364, 836
Hpy8I GTNNAC 1 cut(s) 232
HpyCH4III ACNGT 2 cut(s) 249, 423
HpyCH4IV ACGT 1 cut(s) 557
HpyCH4V TGCA 6 cut(s) 12, 137, 221, 503, 698, 814
HpyF3I CTNAG 2 cut(s) 184, 552
HpySE526I ACGT 1 cut(s) 557
Hsp92I GRCGYC 1 cut(s) 557
Hsp92II CATG 4 cut(s) 83, 175, 302, 839
KpnI GGTACC 1 cut(s) 458
Kzo9I GATC 1 cut(s) 34
LweI GCATC 2 cut(s) 178, 779
MaeI CTAG 2 cut(s) 48, 446
MaeII ACGT 1 cut(s) 557
MaeIII GTNAC 3 cut(s) 347, 423, 562
MalI GATC 1 cut(s) 36
MboI GATC 1 cut(s) 34
MboII GAAGA 5 cut(s) 272, 350, 352, 419, 464
MflI RGATCY 1 cut(s) 34
MluCI AATT 8 cut(s) 155, 161, 165, 195, 381, 386, 660, 746
MmeI TCCRAC 1 cut(s) 618
MnlI CCTC 3 cut(s) 328, 754, 806
MroXI GAANNNNTTC 1 cut(s) 722
MseI TTAA 3 cut(s) 164, 417, 819
MspCI CTTAAG 1 cut(s) 818
MspI CCGG 1 cut(s) 428
MspR9I CCNGG 4 cut(s) 332, 516, 573, 714
MvaI CCWGG 4 cut(s) 332, 516, 573, 714
MvnI CGCG 1 cut(s) 787
NdeII GATC 1 cut(s) 34
NlaIII CATG 4 cut(s) 83, 175, 302, 839
NlaIV GGNNCC 2 cut(s) 456, 642
NmuCI GTSAC 2 cut(s) 347, 562
NspI RCATGY 1 cut(s) 302
NspV TTCGAA 1 cut(s) 665
PagI TCATGA 2 cut(s) 79, 835
PdmI GAANNNNTTC 1 cut(s) 722
PfeI GAWTC 3 cut(s) 146, 325, 576
PshBI ATTAAT 1 cut(s) 164
Psp6I CCWGG 4 cut(s) 330, 514, 571, 712
PspGI CCWGG 4 cut(s) 330, 514, 571, 712
PspN4I GGNNCC 2 cut(s) 456, 642
PstNI CAGNNNCTG 1 cut(s) 149
PsuI RGATCY 1 cut(s) 34
RsaI GTAC 2 cut(s) 129, 456
RsaNI GTAC 2 cut(s) 128, 455
SaqAI TTAA 3 cut(s) 164, 417, 819
Sau3AI GATC 1 cut(s) 34
ScrFI CCNGG 4 cut(s) 332, 516, 573, 714
SfaNI GCATC 2 cut(s) 178, 779
SfuI TTCGAA 1 cut(s) 665
SmlI CTYRAG 2 cut(s) 758, 818
SmoI CTYRAG 2 cut(s) 758, 818
SpeI ACTAGT 1 cut(s) 445
Sse9I AATT 8 cut(s) 155, 161, 165, 195, 381, 386, 660, 746
SsiI CCGC 3 cut(s) 26, 177, 452
SspI AATATT 1 cut(s) 547
SspMI CTAG 2 cut(s) 48, 446
StyD4I CCNGG 4 cut(s) 330, 514, 571, 712
StyI CCWWGG 1 cut(s) 238
TaaI ACNGT 2 cut(s) 249, 423
TaiI ACGT 1 cut(s) 560
TaqI TCGA 2 cut(s) 193, 665
TasI AATT 8 cut(s) 155, 161, 165, 195, 381, 386, 660, 746
TatI WGTACW 1 cut(s) 127
TfiI GAWTC 3 cut(s) 146, 325, 576
Tru1I TTAA 3 cut(s) 164, 417, 819
Tru9I TTAA 3 cut(s) 164, 417, 819
TscAI CASTG 4 cut(s) 103, 567, 601, 850
TseFI GTSAC 2 cut(s) 347, 562
Tsp45I GTSAC 2 cut(s) 347, 562
TspDTI ATGAA 6 cut(s) 87, 298, 456, 759, 824, 846
TspGWI ACGGA 1 cut(s) 465
TspRI CASTG 4 cut(s) 103, 567, 601, 850
Vha464I CTTAAG 1 cut(s) 818
VspI ATTAAT 1 cut(s) 164
XapI RAATTY 3 cut(s) 195, 386, 746
XceI RCATGY 1 cut(s) 302
XmnI GAANNNNTTC 1 cut(s) 722
XspI CTAG 2 cut(s) 48, 446
ZraI GACGTC 1 cut(s) 558
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.