Rmu_co8506135.1_g000001

Cell division control protein 48

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8506135.1
OG0011382
Physical Location & Seq
Forward (+)
1 .. 3084
3084 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8506135.1_g000001.1.cds

Sequence Viewer

Length: 1414 bp
ggtatttttccgcagtccgcatactgttcacagagcttataccggagagagtgagttggcactgcgagaggcttttgcggaggccgcgtcacataccttgtcagggaagccgtctgttgtgtttatagatgaaatcgatgccctctgtcctcgccgtgattctagaagagagcaagatgttcgtatagctgctcaactgcgtttactgatggagtcaaaggcttcgtccacacatgtaccacaagttgttgttgttgcctccaccaatagagtggaagcagtagacccagcactaagaaggtctgggcgttttgatgctgaaattgaagttactacacctactgaagacgagcgctttcaaattctcaagctctacacgagaaagatttctttggatcctgatgttgacctacgagccttggctgcaaaatgcaatggatttgctggagctgaccttgaagctttatgtcgtgaggctgccatgtctgcaatgaggaggtatcaagatgcagacaaagatgtttgtttgctaagcttagcaaaagaagactgggagaatgcaaagtctgtagttaatgcaagtataacaagaggtgtcacggtggaaatccccaaggtgacatgggaagatattggaggcttgaaagatttaaagataaagctccagcaagctgttgagtggcctattaaatattctacagagttttcaaggctgggaatatctccaatacgcggaattcttctttatggtccaccaggatgttcaaaaaccacccttgccaaagccgctgcaaatgctgcccaagcttcttttttttctttgagtggtgcggaattgttttcaatgtatgttggagagggtgaagctctgctccgcaatacctttcggagagctcgccttgcagcacccagcattatattctttgatgaggcagatgttgttgcagccaaacggggtgggagctcaagcaacagcagtactgttggagagaggcttctatctactttgcttactgaaatggatggtttggaggaggctaagggagtttttgtcttggctgctacaaatcgtcctcacgcaattgacgctgcattagttcgaccaggacgctttgatttggtgctctttgtacaaccaccggatttagaaggtcgaaagcagatccttagtgtactcactcgtgagatgaaaataggagatgatgttgatctcaaacgaatagcagaagaaacagagcacttcactggagctgagctgaagggtctatgcaaggaagccggaatagtagctctgagagaagacatatctgccagtgttgtgtgtcatcgccatttccagactgcaaaggactctttaaagccagcattgaccaaagcagatgttgactcatacaaggcttttgccgctgcgtag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04141 ko05134 map04141 map05134
Pfam Domains
Protein Families
AAA

Protein Analysis

470

Amino Acids

51.37

Weight (kDa)

6.17

Isoelectric Point (pI)

36.03

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011382)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G03670 AT2G03670
fragaria_vesca FvH4_4g29870 FvH4_4g29870
malus_domestica MD13G1061600.v1.1 MD16G1060100.v1.1
prunus_persica Prupe.1G288400_v2.0.a1 Prupe.1G288400_v2.0.a1
pyrus_communis pycom16g05230
rosa_chinensis RchiOBHm_Chr4g0438121
rosa_laevigata RLG00000006386
rosa_multiflora Rmu_co8506135.1_g000001
rosa_roxburghii Rroxscaffold_5G00379260
rosa_rugosa Rorug04G0307200
rosa_samantha Rh4AG358700 Rh4BG369600 Rh4CG383700 Rh4DG364500
rosa_wichuraiana Rw0G006320 Rw0G016260

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 283
AccII CGCG 2 cut(s) 87, 733
AciI CCGC 9 cut(s) 11, 18, 78, 85, 733, 787, 831, 875, 1405
AclWI GGATC 3 cut(s) 390, 403, 1157
AcsI RAATTY 2 cut(s) 361, 736
AcuI CTGAAG 2 cut(s) 364, 1278
AfaI GTAC 4 cut(s) 238, 980, 1132, 1174
AfeI AGCGCT 1 cut(s) 354
AfiI CCNNNNNNNGG 2 cut(s) 103, 732
AflIII ACRYGT 1 cut(s) 233
AgsI TTSAA 7 cut(s) 327, 360, 459, 644, 709, 766, 844
AjnI CCWGG 2 cut(s) 755, 1103
Alw21I GWGCWC 4 cut(s) 896, 966, 1126, 1240
AlwI GGATC 3 cut(s) 390, 403, 1157
Aor51HI AGCGCT 1 cut(s) 354
AoxI GGCC 2 cut(s) 82, 681
ApoI RAATTY 2 cut(s) 361, 736
ArsI GACNNNNNNTTYG 2 cut(s) 210, 242
Asp700I GAANNNNTTC 1 cut(s) 386
AspLEI GCGC 1 cut(s) 355
AspS9I GGNCC 1 cut(s) 750
AsuHPI GGTGA 2 cut(s) 629, 873
AvaII GGWCC 1 cut(s) 750
BaeI ACNNNNGTAYC 2 cut(s) 220, 253
BamHI GGATCC 1 cut(s) 395
BanII GRGCYC 2 cut(s) 896, 966
BauI CACGAG 2 cut(s) 377, 1180
BbsI GAAGAC 3 cut(s) 352, 553, 1306
Bbv12I GWGCWC 4 cut(s) 896, 966, 1126, 1240
BccI CCATC 2 cut(s) 203, 1017
BceAI ACGGC 2 cut(s) 95, 139
BcgI CGANNNNNNTGC 2 cut(s) 162, 196
BciT130I CCWGG 2 cut(s) 757, 1105
BfaI CTAG 1 cut(s) 163
BfmI CTRYAG 2 cut(s) 568, 697
BfoI RGCGCY 1 cut(s) 356
BlpI GCTNAGC 3 cut(s) 531, 536, 1252
BmcAI AGTACT 1 cut(s) 980
Bme1390I CCNGG 2 cut(s) 757, 1105
Bme18I GGWCC 1 cut(s) 750
BmgT120I GGNCC 1 cut(s) 750
BmiI GGNNCC 1 cut(s) 397
BmrFI CCNGG 2 cut(s) 757, 1105
BmrI ACTGGG 1 cut(s) 560
BmsI GCATC 3 cut(s) 128, 305, 497
BmuI ACTGGG 1 cut(s) 560
BpiI GAAGAC 3 cut(s) 352, 553, 1306
BpmI CTGGAG 3 cut(s) 466, 648, 1267
Bpu10I CCTNAGC 1 cut(s) 1039
Bpu1102I GCTNAGC 3 cut(s) 531, 536, 1252
BpuEI CTTGAG 2 cut(s) 351, 950
Bsa29I ATCGAT 1 cut(s) 136
BsaBI GATNNNNATC 1 cut(s) 1207
BsaJI CCNNGG 2 cut(s) 418, 613
BsaWI WCCGGW 2 cut(s) 42, 1139
BsaXI ACNNNNNCTCC 6 cut(s) 72, 102, 1036, 1066, 1189, 1219
Bsc4I CCNNNNNNNGG 2 cut(s) 103, 732
Bse1I ACTGG 3 cut(s) 555, 1250, 1312
Bse3DI GCAATG 2 cut(s) 440, 496
Bse8I GATNNNNATC 1 cut(s) 1207
BseBI CCWGG 2 cut(s) 757, 1105
BseCI ATCGAT 1 cut(s) 136
BseDI CCNNGG 2 cut(s) 418, 613
BseGI GGATG 2 cut(s) 765, 1028
BseJI GATNNNNATC 1 cut(s) 1207
BseLI CCNNNNNNNGG 2 cut(s) 103, 732
BseMI GCAATG 2 cut(s) 440, 496
BseMII CTCAG 2 cut(s) 1243, 1284
BseNI ACTGG 3 cut(s) 555, 1250, 1312
BseRI GAGGAG 2 cut(s) 509, 1047
BseYI CCCAGC 3 cut(s) 287, 713, 909
Bsh1236I CGCG 2 cut(s) 87, 733
BshFI GGCC 2 cut(s) 84, 683
BshVI ATCGAT 1 cut(s) 136
BsiHKAI GWGCWC 4 cut(s) 896, 966, 1126, 1240
BsiSI CCGG 3 cut(s) 43, 1140, 1279
BslI CCNNNNNNNGG 2 cut(s) 103, 732
BsmI GAATGC 1 cut(s) 563
BsnI GGCC 2 cut(s) 84, 683
Bsp1286I GDGCHC 4 cut(s) 896, 966, 1126, 1240
Bsp1407I TGTACA 1 cut(s) 1130
Bsp143I GATC 3 cut(s) 395, 1162, 1208
Bsp1720I GCTNAGC 3 cut(s) 531, 536, 1252
BspACI CCGC 9 cut(s) 11, 18, 78, 85, 733, 787, 831, 875, 1405
BspANI GGCC 2 cut(s) 84, 683
BspCNI CTCAG 2 cut(s) 1244, 1285
BspDI ATCGAT 1 cut(s) 136
BspFNI CGCG 2 cut(s) 87, 733
BspLI GGNNCC 1 cut(s) 397
BspPI GGATC 3 cut(s) 390, 403, 1157
BsrDI GCAATG 2 cut(s) 440, 496
BsrGI TGTACA 1 cut(s) 1130
BsrI ACTGG 3 cut(s) 555, 1250, 1312
BssECI CCNNGG 2 cut(s) 418, 613
BssMI GATC 3 cut(s) 395, 1162, 1208
BssSI CACGAG 2 cut(s) 377, 1180
BssT1I CCWWGG 2 cut(s) 418, 613
Bst2BI CACGAG 2 cut(s) 377, 1180
Bst2UI CCWGG 2 cut(s) 757, 1105
Bst4CI ACNGT 3 cut(s) 26, 602, 983
Bst6I CTCTTC 1 cut(s) 161
BstAPI GCANNNNNTGC 1 cut(s) 798
BstAUI TGTACA 1 cut(s) 1130
BstC8I GCNNGC 3 cut(s) 670, 896, 1363
BstDEI CTNAG 7 cut(s) 294, 531, 536, 1039, 1167, 1252, 1293
BstF5I GGATG 2 cut(s) 765, 1028
BstFNI CGCG 2 cut(s) 87, 733
BstH2I RGCGCY 1 cut(s) 356
BstHHI GCGC 1 cut(s) 355
BstKTI GATC 3 cut(s) 398, 1165, 1211
BstMBI GATC 3 cut(s) 395, 1162, 1208
BstNI CCWGG 2 cut(s) 757, 1105
BstNSI RCATGY 1 cut(s) 237
BstSCI CCNGG 2 cut(s) 755, 1103
BstSFI CTRYAG 2 cut(s) 568, 697
BstUI CGCG 2 cut(s) 87, 733
BstV2I GAAGAC 3 cut(s) 352, 553, 1306
BstX2I RGATCY 2 cut(s) 395, 1162
BstXI CCANNNNNNTGG 1 cut(s) 272
BstYI RGATCY 2 cut(s) 395, 1162
Bsu15I ATCGAT 1 cut(s) 136
BsuRI GGCC 2 cut(s) 84, 683
BsuTUI ATCGAT 1 cut(s) 136
BtgZI GCGATG 1 cut(s) 1311
BtsCI GGATG 2 cut(s) 765, 1028
BtsI GCAGTG 1 cut(s) 60
BtsIMutI CAGTG 3 cut(s) 60, 1243, 1319
Cac8I GCNNGC 3 cut(s) 670, 896, 1363
CfoI GCGC 1 cut(s) 355
Cfr13I GGNCC 1 cut(s) 750
ClaI ATCGAT 1 cut(s) 136
CseI GACGC 3 cut(s) 76, 1095, 1117
Csp6I GTAC 4 cut(s) 237, 979, 1131, 1173
CspCI CAANNNNNGTGG 2 cut(s) 938, 973
CviAII CATG 3 cut(s) 234, 482, 622
CviQI GTAC 4 cut(s) 237, 979, 1131, 1173
DdeI CTNAG 7 cut(s) 294, 531, 536, 1039, 1167, 1252, 1293
DpnI GATC 3 cut(s) 397, 1164, 1210
DpnII GATC 3 cut(s) 395, 1162, 1208
DraI TTTAAA 2 cut(s) 652, 1357
Eam1104I CTCTTC 1 cut(s) 161
EarI CTCTTC 1 cut(s) 161
Ecl136II GAGCTC 2 cut(s) 894, 964
Eco130I CCWWGG 2 cut(s) 418, 613
Eco24I GRGCYC 2 cut(s) 896, 966
Eco47I GGWCC 1 cut(s) 750
Eco47III AGCGCT 1 cut(s) 354
Eco53kI GAGCTC 2 cut(s) 894, 964
Eco57I CTGAAG 2 cut(s) 364, 1278
EcoICRI GAGCTC 2 cut(s) 894, 964
EcoRI GAATTC 1 cut(s) 736
EcoRII CCWGG 2 cut(s) 755, 1103
EcoT14I CCWWGG 2 cut(s) 418, 613
EcoT38I GRGCYC 2 cut(s) 896, 966
ErhI CCWWGG 2 cut(s) 418, 613
FaeI CATG 3 cut(s) 237, 485, 625
FatI CATG 3 cut(s) 233, 481, 621
FblI GTMKAC 1 cut(s) 283
FokI GGATG 2 cut(s) 772, 1035
FriOI GRGCYC 2 cut(s) 896, 966
FspBI CTAG 1 cut(s) 163
GlaI GCGC 1 cut(s) 354
GsaI CCCAGC 3 cut(s) 291, 717, 913
GsuI CTGGAG 3 cut(s) 466, 648, 1267
HaeII RGCGCY 1 cut(s) 356
HaeIII GGCC 2 cut(s) 84, 683
HapII CCGG 3 cut(s) 43, 1140, 1279
HgaI GACGC 3 cut(s) 76, 1095, 1117
HhaI GCGC 1 cut(s) 355
Hin1II CATG 3 cut(s) 237, 485, 625
Hin6I GCGC 1 cut(s) 353
HinP1I GCGC 1 cut(s) 353
HincII GTYRAC 2 cut(s) 407, 1385
HindII GTYRAC 2 cut(s) 407, 1385
HindIII AAGCTT 3 cut(s) 460, 533, 805
HinfI GANTC 4 cut(s) 159, 213, 1350, 1386
HpaII CCGG 3 cut(s) 43, 1140, 1279
HphI GGTGA 2 cut(s) 629, 873
Hpy166II GTNNAC 8 cut(s) 29, 204, 229, 284, 407, 753, 1173, 1385
Hpy188I TCNGA 2 cut(s) 889, 1294
Hpy188III TCNNGA 6 cut(s) 163, 399, 471, 504, 1182, 1337
Hpy8I GTNNAC 8 cut(s) 29, 204, 229, 284, 407, 753, 1173, 1385
HpyAV CCTTC 3 cut(s) 292, 1143, 1253
HpyCH4III ACNGT 3 cut(s) 26, 602, 983
HpyF3I CTNAG 7 cut(s) 294, 531, 536, 1039, 1167, 1252, 1293
Hsp92II CATG 3 cut(s) 237, 485, 625
HspAI GCGC 1 cut(s) 353
Kzo9I GATC 3 cut(s) 395, 1162, 1208
LmnI GCTCC 5 cut(s) 447, 667, 877, 961, 1248
LweI GCATC 3 cut(s) 128, 305, 497
MaeI CTAG 1 cut(s) 163
MaeIII GTNAC 4 cut(s) 88, 329, 596, 617
MalI GATC 3 cut(s) 397, 1164, 1210
MboI GATC 3 cut(s) 395, 1162, 1208
MboII GAAGA 7 cut(s) 178, 357, 558, 639, 732, 1239, 1311
MfeI CAATTG 1 cut(s) 1081
MflI RGATCY 2 cut(s) 395, 1162
MhlI GDGCHC 4 cut(s) 896, 966, 1126, 1240
MluCI AATT 5 cut(s) 322, 361, 736, 834, 1081
MlyI GAGTC 3 cut(s) 222, 1344, 1380
MmeI TCCRAC 2 cut(s) 833, 965
MroXI GAANNNNTTC 1 cut(s) 386
MseI TTAA 4 cut(s) 574, 651, 688, 1356
MslI CAYNNNNRTG 1 cut(s) 758
MspA1I CMGCKG 2 cut(s) 789, 1407
MspI CCGG 3 cut(s) 43, 1140, 1279
MspR9I CCNGG 2 cut(s) 757, 1105
MunI CAATTG 1 cut(s) 1081
Mva1269I GAATGC 1 cut(s) 563
MvaI CCWGG 2 cut(s) 757, 1105
MvnI CGCG 2 cut(s) 87, 733
NdeII GATC 3 cut(s) 395, 1162, 1208
NlaIII CATG 3 cut(s) 237, 485, 625
NlaIV GGNNCC 1 cut(s) 397
NmuCI GTSAC 3 cut(s) 88, 596, 617
NspI RCATGY 1 cut(s) 237
PciI ACATGT 1 cut(s) 233
PctI GAATGC 1 cut(s) 563
PdmI GAANNNNTTC 1 cut(s) 386
PfeI GAWTC 1 cut(s) 159
PleI GAGTC 3 cut(s) 221, 1344, 1380
PpsI GAGTC 3 cut(s) 221, 1344, 1380
PscI ACATGT 1 cut(s) 233
Psp124BI GAGCTC 2 cut(s) 896, 966
Psp6I CCWGG 2 cut(s) 755, 1103
PspFI CCCAGC 3 cut(s) 287, 713, 909
PspGI CCWGG 2 cut(s) 755, 1103
PspN4I GGNNCC 1 cut(s) 397
PspPI GGNCC 1 cut(s) 750
PsuI RGATCY 2 cut(s) 395, 1162
RsaI GTAC 4 cut(s) 238, 980, 1132, 1174
RsaNI GTAC 4 cut(s) 237, 979, 1131, 1173
RseI CAYNNNNRTG 1 cut(s) 758
SacI GAGCTC 2 cut(s) 896, 966
SaqAI TTAA 4 cut(s) 574, 651, 688, 1356
Sau3AI GATC 3 cut(s) 395, 1162, 1208
Sau96I GGNCC 1 cut(s) 750
ScaI AGTACT 1 cut(s) 980
SchI GAGTC 3 cut(s) 222, 1344, 1380
ScrFI CCNGG 2 cut(s) 757, 1105
SduI GDGCHC 4 cut(s) 896, 966, 1126, 1240
SfaNI GCATC 3 cut(s) 128, 305, 497
SfcI CTRYAG 2 cut(s) 568, 697
SinI GGWCC 1 cut(s) 750
SmiMI CAYNNNNRTG 1 cut(s) 758
SmlI CTYRAG 2 cut(s) 366, 965
SmoI CTYRAG 2 cut(s) 366, 965
Sse9I AATT 5 cut(s) 322, 361, 736, 834, 1081
SsiI CCGC 9 cut(s) 11, 18, 78, 85, 733, 787, 831, 875, 1405
SspI AATATT 1 cut(s) 693
SspMI CTAG 1 cut(s) 163
SstI GAGCTC 2 cut(s) 896, 966
StyD4I CCNGG 2 cut(s) 755, 1103
StyI CCWWGG 2 cut(s) 418, 613
TaaI ACNGT 3 cut(s) 26, 602, 983
TaqI TCGA 3 cut(s) 136, 1100, 1154
TasI AATT 5 cut(s) 322, 361, 736, 834, 1081
TatI WGTACW 3 cut(s) 978, 1130, 1172
TauI GCSGC 3 cut(s) 87, 789, 1407
TfiI GAWTC 1 cut(s) 159
Tru1I TTAA 4 cut(s) 574, 651, 688, 1356
Tru9I TTAA 4 cut(s) 574, 651, 688, 1356
TscAI CASTG 3 cut(s) 67, 1250, 1319
TseFI GTSAC 3 cut(s) 88, 596, 617
Tsp45I GTSAC 3 cut(s) 88, 596, 617
TspDTI ATGAA 2 cut(s) 145, 1203
TspRI CASTG 3 cut(s) 67, 1250, 1319
VpaK11BI GGWCC 1 cut(s) 750
XapI RAATTY 2 cut(s) 361, 736
XbaI TCTAGA 1 cut(s) 162
XceI RCATGY 1 cut(s) 237
XcmI CCANNNNNNNNNTGG 1 cut(s) 269
XmiI GTMKAC 1 cut(s) 283
XmnI GAANNNNTTC 1 cut(s) 386
XspI CTAG 1 cut(s) 163
ZrmI AGTACT 1 cut(s) 980
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.