Rroxscaffold_5G00379260

Cell division control protein 48

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0011382
Physical Location & Seq
Reverse (-)
59685938 .. 59689872
3935 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00379260.1

Sequence Viewer

Length: 933 bp
ATGTCTGCAATGAGGAGGTATCAAGATGCAGACAAAGACGTTGGTTTGCTAAGCTTAGCAAAAGAAGACTGGGAGAATGCAAAGTCTGTAGTTAATGCAAGTATAACAAGAGGTGTCACGGTGGAAATCCCCAAGGTGACATGGGAAGATATTGGAGGCTTGAAAGATTTAAAGATAAAGCTCCAGCAAGCTGTTGAGTGGCCTATTAAATATTCTACGGAGTTTTCAAGGCTGGGAATATCTCCAATACGCGGAATTCTTCTTTATGGTCCACCAGGATGTTCAAAAACCACCCTTGCTAAAGCCGCTGCAAATGCTGCCCAAGCTTCTTTTTTTCTTTTCAGTGGTGCGGAATTGTTTTCAATGTATGTTGGAGAGGGTGAAGCTCTGCTCCGCAATACCTTTCGGAGAGCTCGCCTTGCAGCACCCAGCATTATATTCTTTGATGAGGCAGATGTTGTTGCAGCCAAACGGGGTGGGAGCTCAAGCAACAGCAGTACTGTTGGAGAGAGGCTTCTATCTACTTTGCTTACTGAAATGGATGGTTTGGAAGAGGCTAAGGGAGTTTTTGTCTTGGCTGCTACAAATCGTCCTCACGCAATTGACGCTGCATTAGTTCGACCAGGACGCTTTGATTTGGTGCTCTTTGTACAACCACCGGATTTAGAAGGTCGAAAGCAGATCCTTAGTGTACTCACTCGTGAGATGAAAATAGGAGATGATGTTGATCTCAAACGAATAGCAGAAGAAACAGAGCACTTCACTGGAGCTGAGCTGAAGGGTCTATGCAAGGAAGCCGGAATAGTAGCTCTGAGAGAAGACATATCTGCCAGTGTTGTGTGTCATCGCCATTTCCAGACTGCAAAGGACTCTTTAAAGCCAGCATTAACCAAAGCAGATGTTGACTCATACAAGGCTTTTGCCGCTGCGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04141 ko05134 map04141 map05134
Pfam Domains
Protein Families
AAA

Protein Analysis

310

Amino Acids

33.68

Weight (kDa)

6.48

Isoelectric Point (pI)

29.68

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AAA PF00004 86 - 217 1e-38 ATPase family associated with various cellular activities (AAA)
AAA_lid_3 PF17862 241 - 286 1.3e-15 AAA+ lid domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011382)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G03670 AT2G03670
fragaria_vesca FvH4_4g29870 FvH4_4g29870
malus_domestica MD13G1061600.v1.1 MD16G1060100.v1.1
prunus_persica Prupe.1G288400_v2.0.a1 Prupe.1G288400_v2.0.a1
pyrus_communis pycom16g05230
rosa_chinensis RchiOBHm_Chr4g0438121
rosa_laevigata RLG00000006386
rosa_multiflora Rmu_co8506135.1_g000001
rosa_roxburghii Rroxscaffold_5G00379260
rosa_rugosa Rorug04G0307200
rosa_samantha Rh4AG358700 Rh4BG369600 Rh4CG383700 Rh4DG364500
rosa_wichuraiana Rw0G006320 Rw0G016260

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 252
AciI CCGC 5 cut(s) 252, 306, 350, 394, 924
AclWI GGATC 1 cut(s) 676
AcsI RAATTY 1 cut(s) 255
AcuI CTGAAG 1 cut(s) 797
AfaI GTAC 3 cut(s) 499, 651, 693
AfiI CCNNNNNNNGG 1 cut(s) 251
AgsI TTSAA 4 cut(s) 163, 228, 285, 363
AjnI CCWGG 2 cut(s) 274, 622
Alw21I GWGCWC 4 cut(s) 415, 485, 645, 759
AlwI GGATC 1 cut(s) 676
AoxI GGCC 1 cut(s) 200
ApeKI GCWGC 7 cut(s) 308, 317, 422, 464, 578, 608, 926
ApoI RAATTY 1 cut(s) 255
AspS9I GGNCC 1 cut(s) 269
AsuHPI GGTGA 2 cut(s) 148, 392
AvaII GGWCC 1 cut(s) 269
BanII GRGCYC 2 cut(s) 415, 485
BauI CACGAG 1 cut(s) 699
BbsI GAAGAC 2 cut(s) 72, 825
Bbv12I GWGCWC 4 cut(s) 415, 485, 645, 759
BbvI GCAGC 7 cut(s) 295, 304, 434, 476, 565, 595, 913
BccI CCATC 1 cut(s) 536
BciT130I CCWGG 2 cut(s) 276, 624
BfmI CTRYAG 1 cut(s) 87
BisI GCNGC 9 cut(s) 306, 309, 318, 423, 465, 579, 609, 924, 927
BlpI GCTNAGC 3 cut(s) 50, 55, 771
BlsI GCNGC 9 cut(s) 307, 310, 319, 424, 466, 580, 610, 925, 928
BmcAI AGTACT 1 cut(s) 499
Bme1390I CCNGG 2 cut(s) 276, 624
Bme18I GGWCC 1 cut(s) 269
BmgT120I GGNCC 1 cut(s) 269
BmrFI CCNGG 2 cut(s) 276, 624
BmrI ACTGGG 1 cut(s) 79
BmsI GCATC 1 cut(s) 16
BmuI ACTGGG 1 cut(s) 79
BpiI GAAGAC 2 cut(s) 72, 825
BpmI CTGGAG 2 cut(s) 167, 786
Bpu10I CCTNAGC 1 cut(s) 558
Bpu1102I GCTNAGC 3 cut(s) 50, 55, 771
BpuEI CTTGAG 1 cut(s) 469
BsaBI GATNNNNATC 1 cut(s) 726
BsaJI CCNNGG 1 cut(s) 132
BsaWI WCCGGW 1 cut(s) 658
BsaXI ACNNNNNCTCC 4 cut(s) 555, 585, 708, 738
Bsc4I CCNNNNNNNGG 1 cut(s) 251
Bse1I ACTGG 3 cut(s) 74, 769, 831
Bse3DI GCAATG 1 cut(s) 15
Bse8I GATNNNNATC 1 cut(s) 726
BseBI CCWGG 2 cut(s) 276, 624
BseDI CCNNGG 1 cut(s) 132
BseGI GGATG 2 cut(s) 284, 547
BseJI GATNNNNATC 1 cut(s) 726
BseLI CCNNNNNNNGG 1 cut(s) 251
BseMI GCAATG 1 cut(s) 15
BseMII CTCAG 2 cut(s) 762, 803
BseNI ACTGG 3 cut(s) 74, 769, 831
BseRI GAGGAG 1 cut(s) 28
BseXI GCAGC 7 cut(s) 295, 304, 434, 476, 565, 595, 913
BseYI CCCAGC 2 cut(s) 232, 428
Bsh1236I CGCG 1 cut(s) 252
BshFI GGCC 1 cut(s) 202
BsiHKAI GWGCWC 4 cut(s) 415, 485, 645, 759
BsiSI CCGG 2 cut(s) 659, 798
BslI CCNNNNNNNGG 1 cut(s) 251
BsmI GAATGC 1 cut(s) 82
BsnI GGCC 1 cut(s) 202
Bsp1286I GDGCHC 4 cut(s) 415, 485, 645, 759
Bsp1407I TGTACA 1 cut(s) 649
Bsp143I GATC 2 cut(s) 681, 727
Bsp1720I GCTNAGC 3 cut(s) 50, 55, 771
BspACI CCGC 5 cut(s) 252, 306, 350, 394, 924
BspANI GGCC 1 cut(s) 202
BspCNI CTCAG 2 cut(s) 763, 804
BspFNI CGCG 1 cut(s) 252
BspPI GGATC 1 cut(s) 676
BsrDI GCAATG 1 cut(s) 15
BsrGI TGTACA 1 cut(s) 649
BsrI ACTGG 3 cut(s) 74, 769, 831
BssECI CCNNGG 1 cut(s) 132
BssMI GATC 2 cut(s) 681, 727
BssSI CACGAG 1 cut(s) 699
BssT1I CCWWGG 1 cut(s) 132
Bst2BI CACGAG 1 cut(s) 699
Bst2UI CCWGG 2 cut(s) 276, 624
Bst4CI ACNGT 2 cut(s) 121, 502
Bst6I CTCTTC 1 cut(s) 546
BstAPI GCANNNNNTGC 1 cut(s) 317
BstAUI TGTACA 1 cut(s) 649
BstC8I GCNNGC 3 cut(s) 189, 415, 882
BstDEI CTNAG 6 cut(s) 50, 55, 558, 686, 771, 812
BstF5I GGATG 2 cut(s) 284, 547
BstFNI CGCG 1 cut(s) 252
BstKTI GATC 2 cut(s) 684, 730
BstMBI GATC 2 cut(s) 681, 727
BstMWI GCNNNNNNNGC 7 cut(s) 305, 314, 317, 323, 419, 605, 923
BstNI CCWGG 2 cut(s) 276, 624
BstSCI CCNGG 2 cut(s) 274, 622
BstSFI CTRYAG 1 cut(s) 87
BstUI CGCG 1 cut(s) 252
BstV1I GCAGC 7 cut(s) 295, 304, 434, 476, 565, 595, 913
BstV2I GAAGAC 2 cut(s) 72, 825
BstX2I RGATCY 1 cut(s) 681
BstYI RGATCY 1 cut(s) 681
BsuRI GGCC 1 cut(s) 202
BtgZI GCGATG 1 cut(s) 830
BtsCI GGATG 2 cut(s) 284, 547
BtsIMutI CAGTG 3 cut(s) 349, 762, 838
Cac8I GCNNGC 3 cut(s) 189, 415, 882
Cfr13I GGNCC 1 cut(s) 269
CseI GACGC 2 cut(s) 614, 636
Csp6I GTAC 3 cut(s) 498, 650, 692
CspCI CAANNNNNGTGG 2 cut(s) 457, 492
CviAII CATG 1 cut(s) 141
CviQI GTAC 3 cut(s) 498, 650, 692
DdeI CTNAG 6 cut(s) 50, 55, 558, 686, 771, 812
DpnI GATC 2 cut(s) 683, 729
DpnII GATC 2 cut(s) 681, 727
DraI TTTAAA 2 cut(s) 171, 876
Eam1104I CTCTTC 1 cut(s) 546
EarI CTCTTC 1 cut(s) 546
Ecl136II GAGCTC 2 cut(s) 413, 483
Eco130I CCWWGG 1 cut(s) 132
Eco24I GRGCYC 2 cut(s) 415, 485
Eco47I GGWCC 1 cut(s) 269
Eco53kI GAGCTC 2 cut(s) 413, 483
Eco57I CTGAAG 1 cut(s) 797
EcoICRI GAGCTC 2 cut(s) 413, 483
EcoRI GAATTC 1 cut(s) 255
EcoRII CCWGG 2 cut(s) 274, 622
EcoT14I CCWWGG 1 cut(s) 132
EcoT38I GRGCYC 2 cut(s) 415, 485
ErhI CCWWGG 1 cut(s) 132
FaeI CATG 1 cut(s) 144
FaiI YATR 8 cut(s) 104, 142, 267, 369, 437, 787, 824, 910
FatI CATG 1 cut(s) 140
Fnu4HI GCNGC 9 cut(s) 306, 309, 318, 423, 465, 579, 609, 924, 927
FokI GGATG 2 cut(s) 291, 554
FriOI GRGCYC 2 cut(s) 415, 485
Fsp4HI GCNGC 9 cut(s) 306, 309, 318, 423, 465, 579, 609, 924, 927
GluI GCNGC 9 cut(s) 306, 309, 318, 423, 465, 579, 609, 924, 927
GsaI CCCAGC 2 cut(s) 236, 432
GsuI CTGGAG 2 cut(s) 167, 786
HaeIII GGCC 1 cut(s) 202
HapII CCGG 2 cut(s) 659, 798
HgaI GACGC 2 cut(s) 614, 636
Hin1II CATG 1 cut(s) 144
HincII GTYRAC 1 cut(s) 904
HindII GTYRAC 1 cut(s) 904
HindIII AAGCTT 2 cut(s) 52, 324
HinfI GANTC 2 cut(s) 869, 905
HpaII CCGG 2 cut(s) 659, 798
HphI GGTGA 2 cut(s) 148, 392
Hpy166II GTNNAC 3 cut(s) 272, 692, 904
Hpy188I TCNGA 2 cut(s) 408, 813
Hpy188III TCNNGA 3 cut(s) 23, 701, 856
Hpy8I GTNNAC 3 cut(s) 272, 692, 904
HpyAV CCTTC 2 cut(s) 662, 772
HpyCH4III ACNGT 2 cut(s) 121, 502
HpyCH4IV ACGT 1 cut(s) 39
HpyF10VI GCNNNNNNNGC 7 cut(s) 305, 314, 317, 323, 419, 605, 923
HpyF3I CTNAG 6 cut(s) 50, 55, 558, 686, 771, 812
HpySE526I ACGT 1 cut(s) 39
Hsp92II CATG 1 cut(s) 144
Kzo9I GATC 2 cut(s) 681, 727
LmnI GCTCC 4 cut(s) 186, 396, 480, 767
Lsp1109I GCAGC 7 cut(s) 295, 304, 434, 476, 565, 595, 913
LweI GCATC 1 cut(s) 16
MaeII ACGT 1 cut(s) 39
MaeIII GTNAC 2 cut(s) 115, 136
MalI GATC 2 cut(s) 683, 729
MboI GATC 2 cut(s) 681, 727
MboII GAAGA 6 cut(s) 77, 158, 251, 563, 758, 830
MfeI CAATTG 1 cut(s) 600
MflI RGATCY 1 cut(s) 681
MhlI GDGCHC 4 cut(s) 415, 485, 645, 759
MluCI AATT 3 cut(s) 255, 353, 600
MlyI GAGTC 2 cut(s) 863, 899
MmeI TCCRAC 2 cut(s) 352, 484
MnlI CCTC 9 cut(s) 6, 9, 104, 149, 370, 442, 504, 547, 603
MseI TTAA 5 cut(s) 93, 170, 207, 875, 887
MslI CAYNNNNRTG 1 cut(s) 277
MspA1I CMGCKG 2 cut(s) 308, 926
MspI CCGG 2 cut(s) 659, 798
MspR9I CCNGG 2 cut(s) 276, 624
MunI CAATTG 1 cut(s) 600
Mva1269I GAATGC 1 cut(s) 82
MvaI CCWGG 2 cut(s) 276, 624
MvnI CGCG 1 cut(s) 252
MwoI GCNNNNNNNGC 7 cut(s) 305, 314, 317, 323, 419, 605, 923
NdeII GATC 2 cut(s) 681, 727
NlaIII CATG 1 cut(s) 144
NmuCI GTSAC 2 cut(s) 115, 136
PctI GAATGC 1 cut(s) 82
PkrI GCNGC 9 cut(s) 307, 310, 319, 424, 466, 580, 610, 925, 928
PleI GAGTC 2 cut(s) 863, 899
PpsI GAGTC 2 cut(s) 863, 899
Psp124BI GAGCTC 2 cut(s) 415, 485
Psp6I CCWGG 2 cut(s) 274, 622
PspFI CCCAGC 2 cut(s) 232, 428
PspGI CCWGG 2 cut(s) 274, 622
PspPI GGNCC 1 cut(s) 269
PsuI RGATCY 1 cut(s) 681
RsaI GTAC 3 cut(s) 499, 651, 693
RsaNI GTAC 3 cut(s) 498, 650, 692
RseI CAYNNNNRTG 1 cut(s) 277
SacI GAGCTC 2 cut(s) 415, 485
SaqAI TTAA 5 cut(s) 93, 170, 207, 875, 887
SatI GCNGC 9 cut(s) 306, 309, 318, 423, 465, 579, 609, 924, 927
Sau3AI GATC 2 cut(s) 681, 727
Sau96I GGNCC 1 cut(s) 269
ScaI AGTACT 1 cut(s) 499
SchI GAGTC 2 cut(s) 863, 899
ScrFI CCNGG 2 cut(s) 276, 624
SduI GDGCHC 4 cut(s) 415, 485, 645, 759
SfaNI GCATC 1 cut(s) 16
SfcI CTRYAG 1 cut(s) 87
SinI GGWCC 1 cut(s) 269
SmiMI CAYNNNNRTG 1 cut(s) 277
SmlI CTYRAG 1 cut(s) 484
SmoI CTYRAG 1 cut(s) 484
Sse9I AATT 3 cut(s) 255, 353, 600
SsiI CCGC 5 cut(s) 252, 306, 350, 394, 924
SspI AATATT 1 cut(s) 212
SstI GAGCTC 2 cut(s) 415, 485
StyD4I CCNGG 2 cut(s) 274, 622
StyI CCWWGG 1 cut(s) 132
TaaI ACNGT 2 cut(s) 121, 502
TaiI ACGT 1 cut(s) 42
TaqI TCGA 2 cut(s) 619, 673
TasI AATT 3 cut(s) 255, 353, 600
TatI WGTACW 3 cut(s) 497, 649, 691
TauI GCSGC 2 cut(s) 308, 926
Tru1I TTAA 5 cut(s) 93, 170, 207, 875, 887
Tru9I TTAA 5 cut(s) 93, 170, 207, 875, 887
TscAI CASTG 3 cut(s) 349, 769, 838
TseFI GTSAC 2 cut(s) 115, 136
TseI GCWGC 7 cut(s) 308, 317, 422, 464, 578, 608, 926
Tsp45I GTSAC 2 cut(s) 115, 136
TspDTI ATGAA 1 cut(s) 722
TspGWI ACGGA 1 cut(s) 233
TspRI CASTG 3 cut(s) 349, 769, 838
VpaK11BI GGWCC 1 cut(s) 269
XapI RAATTY 1 cut(s) 255
ZrmI AGTACT 1 cut(s) 499
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.