Rh4CG383700

Cell division control protein 48

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4C
OG0011382
Physical Location & Seq
Reverse (-)
63659972 .. 63663945
3974 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4CG383700.1

Sequence Viewer

Length: 1479 bp
ATGGAAACCCACAGCTCCTGTAGCATCGCCGCCACAAACGACGACGGCGAATGGAGAGCCGAAAAAGCTATAGGCGGCAACGCCCAAGCTCTCCAAGCTCTCAGAGAACTCATCGTCTACCCTCTCCTCTTTTCTCGCCAAGCCAAAAAGCTCGGTCTCAAATGGCCCCGAGGTTTGCTTCTCTACGGTCCTCCCGGCACCGGAAAGACAAGCTTGGTCCGCGCAGTGGTTCAGGAATGTGGTGCGCATTTAGTTCTCATCAGTCCGCATACTGTTCACAGAGCTTATACCGGAGAGAGTGAGTTGGCACTGCGAGAGGCTTTTGCGGAGGCCGCGTCACATACATTGTCAGGGAAGCCGTCTGTTGTGTTTATAGATGAAATTGATGCCCTCTGTCCTCGCCGTGATTCTAGAAGAGAGCAAGATGTTCGTATAGCTGCTCAACTGCGTTTGCTGATGGAGTCAAAGGCTTCGTCGACGGATGTACCACAAGTTGTTGTTGTTGCCTCCACTAATAGAGTGGAAGCAGTAGACCCAGCACTGAGAAGGTCTGGGCGTTTTGATGCTGAAATTGAAGTTACTACACCTACTGAAGATGAACGTTTTCAAATCCTCAAGCTCTACACGAGAAAGATTTCTTTGGATCCTGATGTTGACCTACGAGCCTTGGCTGCAAAATGCAATGGATTTGCTGGAGCTGACCTGGAAGCTTTATGTCGTGAGGCTGCCATGTCTGCAATGAGGAGGTATCAAGATGCAGACAAAGATGTTGGTTTGCTAAGCTTAGCAAAAGAAGACTGGGAGAATGCAAAGTCTGTAGTTAATGCAAGTATAACAAGAGGTGTCACGGTGGAAATCCCCAAGGTGACATGGGAAGATATTGGAGGCTTGAAAGATTTAAAGATAAAGCTCCAGCAAGCTGTTGAGTGGCCTATTAAATATTCTACAGAGTTTTCAAGGCTGGGAATATCTCCTATACGCGGAATTCTTCTTTATGGTCCACCAGGATGTTCAAAAACCACCCTTGCCAAAGCCGCTGCAAATGCTGCCCAAGCTTCTTTTTTTTCTTTGAGTGGTGCGGAATTGTTTTCAATGTATGTTGGAGAGGGTGAAGCTCTGCTCCGCAATACCTTTCGGAGAGCTCGCCTTGCAGCACCCAGCATTATATTCTTTGATGAGGCAGATGTTGTTGCAGCCAAACGGGGTGGGAGCTCAAGCAACAGCAGTACTGTTGGAGAGAGGCTTCTATCTACTTTGCTTACTGAAATGGATGGTTTGGAAGAGGCTAAGGGAGTTTTTGTCTTGGCTGCTACAAATCGTCCTCACGCAATTGACGCTGCATTAGTTCGACCAGGACGCTTTGATTTGGTAAGAATTTGTTTCTGTCACATGATTTTCCCGTGTTATTCAATTGTTTCCTATATTCTTGAAACTTGGTATTTTCATGTAATATCGAAAGAGGTACTGGTATTTTTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04141 ko05134 map04141 map05134
Pfam Domains
Protein Families
AAA

Protein Analysis

492

Amino Acids

53.9

Weight (kDa)

6.74

Isoelectric Point (pI)

33.16

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AAA_16 PF13191 56 - 167 2.2e-06 AAA ATPase domain
AAA PF00004 59 - 194 3e-35 ATPase family associated with various cellular activities (AAA)
AAA_lid_3 PF17862 217 - 254 1.2e-14 AAA+ lid domain
AAA PF00004 329 - 456 1.8e-38 ATPase family associated with various cellular activities (AAA)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011382)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G03670 AT2G03670
fragaria_vesca FvH4_4g29870 FvH4_4g29870
malus_domestica MD13G1061600.v1.1 MD16G1060100.v1.1
prunus_persica Prupe.1G288400_v2.0.a1 Prupe.1G288400_v2.0.a1
pyrus_communis pycom16g05230
rosa_chinensis RchiOBHm_Chr4g0438121
rosa_laevigata RLG00000006386
rosa_multiflora Rmu_co8506135.1_g000001
rosa_roxburghii Rroxscaffold_5G00379260
rosa_rugosa Rorug04G0307200
rosa_samantha Rh4AG358700 Rh4BG369600 Rh4CG383700 Rh4DG364500
rosa_wichuraiana Rw0G006320 Rw0G016260

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 246
AccB1I GGYRCC 1 cut(s) 197
AccI GTMKAC 3 cut(s) 117, 476, 531
AccII CGCG 3 cut(s) 222, 335, 981
AclI AACGTT 1 cut(s) 601
AclWI GGATC 2 cut(s) 638, 651
AcsI RAATTY 2 cut(s) 984, 1374
AcuI CTGAAG 1 cut(s) 612
AfaI GTAC 3 cut(s) 486, 1228, 1464
AfiI CCNNNNNNNGG 3 cut(s) 200, 226, 980
AgsI TTSAA 8 cut(s) 575, 608, 892, 957, 1014, 1092, 1410, 1430
AjnI CCWGG 3 cut(s) 702, 1003, 1351
Alw21I GWGCWC 2 cut(s) 1144, 1214
Alw26I GTCTC 1 cut(s) 161
AlwI GGATC 2 cut(s) 638, 651
AlwNI CAGNNNCTG 1 cut(s) 18
Ama87I CYCGRG 1 cut(s) 168
AoxI GGCC 3 cut(s) 164, 330, 929
ApeKI GCWGC 9 cut(s) 437, 671, 725, 1037, 1046, 1151, 1193, 1307, 1337
ApoI RAATTY 2 cut(s) 984, 1374
ArsI GACNNNNNNTTYG 2 cut(s) 458, 490
Asp700I GAANNNNTTC 2 cut(s) 603, 634
AspLEI GCGC 2 cut(s) 224, 247
AspS9I GGNCC 4 cut(s) 165, 188, 217, 998
AsuC2I CCSGG 1 cut(s) 195
AsuHPI GGTGA 2 cut(s) 877, 1121
AvaI CYCGRG 1 cut(s) 168
AvaII GGWCC 3 cut(s) 188, 217, 998
BaeI ACNNNNGTAYC 2 cut(s) 468, 501
BamHI GGATCC 1 cut(s) 643
BanI GGYRCC 1 cut(s) 197
BanII GRGCYC 2 cut(s) 1144, 1214
BauI CACGAG 1 cut(s) 625
BbsI GAAGAC 1 cut(s) 801
Bbv12I GWGCWC 2 cut(s) 1144, 1214
BbvI GCAGC 9 cut(s) 424, 658, 712, 1024, 1033, 1163, 1205, 1294, 1324
BccI CCATC 2 cut(s) 451, 1265
BceAI ACGGC 3 cut(s) 61, 343, 387
BcgI CGANNNNNNTGC 2 cut(s) 410, 444
BciT130I CCWGG 3 cut(s) 704, 1005, 1353
BcnI CCSGG 1 cut(s) 195
BcoDI GTCTC 1 cut(s) 161
BfaI CTAG 1 cut(s) 411
BfmI CTRYAG 4 cut(s) 19, 69, 816, 945
BlpI GCTNAGC 2 cut(s) 779, 784
BmcAI AGTACT 1 cut(s) 1228
Bme1390I CCNGG 4 cut(s) 195, 704, 1005, 1353
Bme18I GGWCC 3 cut(s) 188, 217, 998
BmeT110I CYCGRG 1 cut(s) 168
BmgT120I GGNCC 4 cut(s) 165, 188, 217, 998
BmiI GGNNCC 3 cut(s) 167, 199, 645
BmrFI CCNGG 4 cut(s) 195, 704, 1005, 1353
BmrI ACTGGG 1 cut(s) 808
BmsI GCATC 4 cut(s) 33, 376, 553, 745
BmuI ACTGGG 1 cut(s) 808
BpiI GAAGAC 1 cut(s) 801
BpmI CTGGAG 2 cut(s) 714, 896
Bpu10I CCTNAGC 1 cut(s) 1287
Bpu1102I GCTNAGC 2 cut(s) 779, 784
BpuEI CTTGAG 2 cut(s) 599, 1198
BpuMI CCSGG 1 cut(s) 195
BsaI GGTCTC 1 cut(s) 161
BsaJI CCNNGG 3 cut(s) 169, 666, 861
BsaWI WCCGGW 2 cut(s) 200, 290
BsaXI ACNNNNNCTCC 4 cut(s) 320, 350, 1284, 1314
Bsc4I CCNNNNNNNGG 3 cut(s) 200, 226, 980
Bse1I ACTGG 2 cut(s) 803, 1470
Bse3DI GCAATG 2 cut(s) 688, 744
BseBI CCWGG 3 cut(s) 704, 1005, 1353
BseDI CCNNGG 3 cut(s) 169, 666, 861
BseGI GGATG 3 cut(s) 487, 1013, 1276
BseLI CCNNNNNNNGG 3 cut(s) 200, 226, 980
BseMI GCAATG 2 cut(s) 688, 744
BseMII CTCAG 2 cut(s) 115, 533
BseNI ACTGG 2 cut(s) 803, 1470
BseRI GAGGAG 2 cut(s) 116, 757
BseXI GCAGC 9 cut(s) 424, 658, 712, 1024, 1033, 1163, 1205, 1294, 1324
BseYI CCCAGC 3 cut(s) 535, 961, 1157
Bsh1236I CGCG 3 cut(s) 222, 335, 981
BshFI GGCC 3 cut(s) 166, 332, 931
BshNI GGYRCC 1 cut(s) 197
BsiHKAI GWGCWC 2 cut(s) 1144, 1214
BsiHKCI CYCGRG 1 cut(s) 168
BsiSI CCGG 3 cut(s) 195, 201, 291
BslI CCNNNNNNNGG 3 cut(s) 200, 226, 980
BsmAI GTCTC 1 cut(s) 161
BsmI GAATGC 1 cut(s) 811
BsnI GGCC 3 cut(s) 166, 332, 931
Bso31I GGTCTC 1 cut(s) 161
BsoBI CYCGRG 1 cut(s) 168
Bsp1286I GDGCHC 2 cut(s) 1144, 1214
Bsp143I GATC 1 cut(s) 643
Bsp1720I GCTNAGC 2 cut(s) 779, 784
BspANI GGCC 3 cut(s) 166, 332, 931
BspCNI CTCAG 2 cut(s) 114, 534
BspFNI CGCG 3 cut(s) 222, 335, 981
BspLI GGNNCC 3 cut(s) 167, 199, 645
BspPI GGATC 2 cut(s) 638, 651
BspT107I GGYRCC 1 cut(s) 197
BspTNI GGTCTC 1 cut(s) 161
BsrDI GCAATG 2 cut(s) 688, 744
BsrI ACTGG 2 cut(s) 803, 1470
BssECI CCNNGG 3 cut(s) 169, 666, 861
BssMI GATC 1 cut(s) 643
BssSI CACGAG 1 cut(s) 625
BssT1I CCWWGG 2 cut(s) 666, 861
Bst2BI CACGAG 1 cut(s) 625
Bst2UI CCWGG 3 cut(s) 704, 1005, 1353
Bst4CI ACNGT 4 cut(s) 188, 274, 850, 1231
Bst6I CTCTTC 2 cut(s) 409, 1275
BstAPI GCANNNNNTGC 1 cut(s) 1046
BstC8I GCNNGC 2 cut(s) 918, 1144
BstDEI CTNAG 5 cut(s) 101, 542, 779, 784, 1287
BstF5I GGATG 3 cut(s) 487, 1013, 1276
BstFNI CGCG 3 cut(s) 222, 335, 981
BstHHI GCGC 2 cut(s) 224, 247
BstKTI GATC 1 cut(s) 646
BstMAI GTCTC 1 cut(s) 161
BstMBI GATC 1 cut(s) 643
BstNI CCWGG 3 cut(s) 704, 1005, 1353
BstSCI CCNGG 4 cut(s) 193, 702, 1003, 1351
BstSFI CTRYAG 4 cut(s) 19, 69, 816, 945
BstUI CGCG 3 cut(s) 222, 335, 981
BstV1I GCAGC 9 cut(s) 424, 658, 712, 1024, 1033, 1163, 1205, 1294, 1324
BstV2I GAAGAC 1 cut(s) 801
BstX2I RGATCY 1 cut(s) 643
BstYI RGATCY 1 cut(s) 643
BsuRI GGCC 3 cut(s) 166, 332, 931
BtgZI GCGATG 1 cut(s) 10
BtsCI GGATG 3 cut(s) 487, 1013, 1276
BtsI GCAGTG 2 cut(s) 231, 308
BtsIMutI CAGTG 3 cut(s) 231, 308, 539
Cac8I GCNNGC 2 cut(s) 918, 1144
CaiI CAGNNNCTG 1 cut(s) 18
CfoI GCGC 2 cut(s) 224, 247
Cfr13I GGNCC 4 cut(s) 165, 188, 217, 998
CseI GACGC 3 cut(s) 324, 1343, 1365
Csp6I GTAC 3 cut(s) 485, 1227, 1463
CspCI CAANNNNNGTGG 2 cut(s) 1186, 1221
CviAII CATG 4 cut(s) 730, 870, 1390, 1445
CviQI GTAC 3 cut(s) 485, 1227, 1463
DdeI CTNAG 5 cut(s) 101, 542, 779, 784, 1287
DpnI GATC 1 cut(s) 645
DpnII GATC 1 cut(s) 643
DraI TTTAAA 1 cut(s) 900
Eam1104I CTCTTC 2 cut(s) 409, 1275
EarI CTCTTC 2 cut(s) 409, 1275
Ecl136II GAGCTC 2 cut(s) 1142, 1212
Eco130I CCWWGG 2 cut(s) 666, 861
Eco24I GRGCYC 2 cut(s) 1144, 1214
Eco31I GGTCTC 1 cut(s) 161
Eco47I GGWCC 3 cut(s) 188, 217, 998
Eco53kI GAGCTC 2 cut(s) 1142, 1212
Eco57I CTGAAG 1 cut(s) 612
Eco88I CYCGRG 1 cut(s) 168
EcoICRI GAGCTC 2 cut(s) 1142, 1212
EcoRI GAATTC 1 cut(s) 984
EcoRII CCWGG 3 cut(s) 702, 1003, 1351
EcoT14I CCWWGG 2 cut(s) 666, 861
EcoT38I GRGCYC 2 cut(s) 1144, 1214
ErhI CCWWGG 2 cut(s) 666, 861
FaeI CATG 4 cut(s) 733, 873, 1393, 1448
FalI AAGNNNNNCTT 2 cut(s) 197, 229
FatI CATG 4 cut(s) 729, 869, 1389, 1444
FblI GTMKAC 3 cut(s) 117, 476, 531
FokI GGATG 3 cut(s) 494, 1020, 1283
FriOI GRGCYC 2 cut(s) 1144, 1214
FspAI RTGCGCAY 1 cut(s) 246
FspBI CTAG 1 cut(s) 411
FspI TGCGCA 1 cut(s) 246
GlaI GCGC 2 cut(s) 223, 246
GsaI CCCAGC 3 cut(s) 539, 965, 1161
GsuI CTGGAG 2 cut(s) 714, 896
HaeIII GGCC 3 cut(s) 166, 332, 931
HapII CCGG 3 cut(s) 195, 201, 291
HgaI GACGC 3 cut(s) 324, 1343, 1365
HhaI GCGC 2 cut(s) 224, 247
Hin1II CATG 4 cut(s) 733, 873, 1393, 1448
Hin6I GCGC 2 cut(s) 222, 245
HinP1I GCGC 2 cut(s) 222, 245
HincII GTYRAC 2 cut(s) 477, 655
HindII GTYRAC 2 cut(s) 477, 655
HindIII AAGCTT 4 cut(s) 211, 708, 781, 1053
HinfI GANTC 2 cut(s) 407, 461
HpaII CCGG 3 cut(s) 195, 201, 291
HphI GGTGA 2 cut(s) 877, 1121
Hpy166II GTNNAC 6 cut(s) 118, 277, 477, 532, 655, 1001
Hpy188I TCNGA 3 cut(s) 104, 1137, 1478
Hpy188III TCNNGA 6 cut(s) 233, 411, 647, 719, 752, 1427
Hpy8I GTNNAC 6 cut(s) 118, 277, 477, 532, 655, 1001
Hpy99I CGWCG 4 cut(s) 44, 47, 478, 481
HpyAV CCTTC 1 cut(s) 540
HpyCH4III ACNGT 4 cut(s) 188, 274, 850, 1231
HpyCH4IV ACGT 1 cut(s) 601
HpyF3I CTNAG 5 cut(s) 101, 542, 779, 784, 1287
HpySE526I ACGT 1 cut(s) 601
Hsp92II CATG 4 cut(s) 733, 873, 1393, 1448
HspAI GCGC 2 cut(s) 222, 245
Kzo9I GATC 1 cut(s) 643
LmnI GCTCC 5 cut(s) 20, 695, 915, 1125, 1209
Lsp1109I GCAGC 9 cut(s) 424, 658, 712, 1024, 1033, 1163, 1205, 1294, 1324
LweI GCATC 4 cut(s) 33, 376, 553, 745
MaeI CTAG 1 cut(s) 411
MaeII ACGT 1 cut(s) 601
MaeIII GTNAC 5 cut(s) 336, 577, 844, 865, 1385
MalI GATC 1 cut(s) 645
MboI GATC 1 cut(s) 643
MboII GAAGA 6 cut(s) 426, 605, 806, 887, 980, 1292
MfeI CAATTG 2 cut(s) 1329, 1410
MflI RGATCY 1 cut(s) 643
MhlI GDGCHC 2 cut(s) 1144, 1214
MluCI AATT 7 cut(s) 381, 570, 984, 1082, 1329, 1374, 1410
MlyI GAGTC 1 cut(s) 470
MmeI TCCRAC 2 cut(s) 1081, 1213
MroXI GAANNNNTTC 2 cut(s) 603, 634
MseI TTAA 3 cut(s) 822, 899, 936
MslI CAYNNNNRTG 1 cut(s) 1006
MspA1I CMGCKG 1 cut(s) 1037
MspI CCGG 3 cut(s) 195, 201, 291
MspR9I CCNGG 4 cut(s) 195, 704, 1005, 1353
MunI CAATTG 2 cut(s) 1329, 1410
Mva1269I GAATGC 1 cut(s) 811
MvaI CCWGG 3 cut(s) 704, 1005, 1353
MvnI CGCG 3 cut(s) 222, 335, 981
NciI CCSGG 1 cut(s) 195
NdeII GATC 1 cut(s) 643
NlaIII CATG 4 cut(s) 733, 873, 1393, 1448
NlaIV GGNNCC 3 cut(s) 167, 199, 645
NmuCI GTSAC 4 cut(s) 336, 844, 865, 1385
NsbI TGCGCA 1 cut(s) 246
PcsI WCGNNNNNNNCGW 1 cut(s) 45
PctI GAATGC 1 cut(s) 811
PdmI GAANNNNTTC 2 cut(s) 603, 634
PfeI GAWTC 1 cut(s) 407
PleI GAGTC 1 cut(s) 469
PpsI GAGTC 1 cut(s) 469
Psp124BI GAGCTC 2 cut(s) 1144, 1214
Psp1406I AACGTT 1 cut(s) 601
Psp6I CCWGG 3 cut(s) 702, 1003, 1351
PspFI CCCAGC 3 cut(s) 535, 961, 1157
PspGI CCWGG 3 cut(s) 702, 1003, 1351
PspN4I GGNNCC 3 cut(s) 167, 199, 645
PspPI GGNCC 4 cut(s) 165, 188, 217, 998
PstNI CAGNNNCTG 1 cut(s) 18
PsuI RGATCY 1 cut(s) 643
RsaI GTAC 3 cut(s) 486, 1228, 1464
RsaNI GTAC 3 cut(s) 485, 1227, 1463
RseI CAYNNNNRTG 1 cut(s) 1006
SacI GAGCTC 2 cut(s) 1144, 1214
SalI GTCGAC 1 cut(s) 475
SaqAI TTAA 3 cut(s) 822, 899, 936
Sau3AI GATC 1 cut(s) 643
Sau96I GGNCC 4 cut(s) 165, 188, 217, 998
ScaI AGTACT 1 cut(s) 1228
SchI GAGTC 1 cut(s) 470
ScrFI CCNGG 4 cut(s) 195, 704, 1005, 1353
SduI GDGCHC 2 cut(s) 1144, 1214
SfaNI GCATC 4 cut(s) 33, 376, 553, 745
SfcI CTRYAG 4 cut(s) 19, 69, 816, 945
SgrDI CGTCGACG 1 cut(s) 475
SinI GGWCC 3 cut(s) 188, 217, 998
SmiMI CAYNNNNRTG 1 cut(s) 1006
SmlI CTYRAG 2 cut(s) 614, 1213
SmoI CTYRAG 2 cut(s) 614, 1213
Sse9I AATT 7 cut(s) 381, 570, 984, 1082, 1329, 1374, 1410
SspI AATATT 1 cut(s) 941
SspMI CTAG 1 cut(s) 411
SstI GAGCTC 2 cut(s) 1144, 1214
StyD4I CCNGG 4 cut(s) 193, 702, 1003, 1351
StyI CCWWGG 2 cut(s) 666, 861
TaaI ACNGT 4 cut(s) 188, 274, 850, 1231
TaiI ACGT 1 cut(s) 604
TaqI TCGA 3 cut(s) 476, 1348, 1454
TaqII GACCGA 1 cut(s) 143
TasI AATT 7 cut(s) 381, 570, 984, 1082, 1329, 1374, 1410
TatI WGTACW 1 cut(s) 1226
TauI GCSGC 4 cut(s) 32, 78, 335, 1037
TfiI GAWTC 1 cut(s) 407
Tru1I TTAA 3 cut(s) 822, 899, 936
Tru9I TTAA 3 cut(s) 822, 899, 936
TscAI CASTG 3 cut(s) 231, 315, 546
TseFI GTSAC 4 cut(s) 336, 844, 865, 1385
TseI GCWGC 9 cut(s) 437, 671, 725, 1037, 1046, 1151, 1193, 1307, 1337
Tsp45I GTSAC 4 cut(s) 336, 844, 865, 1385
TspDTI ATGAA 3 cut(s) 393, 612, 1433
TspGWI ACGGA 1 cut(s) 494
TspRI CASTG 3 cut(s) 231, 315, 546
VpaK11BI GGWCC 3 cut(s) 188, 217, 998
XapI RAATTY 2 cut(s) 984, 1374
XbaI TCTAGA 1 cut(s) 410
XcmI CCANNNNNNNNNTGG 1 cut(s) 517
XmiI GTMKAC 3 cut(s) 117, 476, 531
XmnI GAANNNNTTC 2 cut(s) 603, 634
XspI CTAG 1 cut(s) 411
ZrmI AGTACT 1 cut(s) 1228
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.