Rh4DG364500

Cell division control protein 48

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4D
OG0011382
Physical Location & Seq
Reverse (-)
58542163 .. 58546133
3971 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4DG364500.1

Sequence Viewer

Length: 1473 bp
ATGGAAACCCACAGCTCCTGTAGCATCACAAACGACGACGGCGAATGGAGAGCCGAAAAAGCTATAGGCGGCAACGCCCAAGCTCTCCAAGCTCTCAGAGAACTCATCGTCTACCCTCTCCTCTTTTCTCGCCAAGCCAAAAAGCTCGGTCTCAAATGGCCCCGAGGTTTGCTTCTCTACGGTCCTCCCGGCACCGGAAAGACAAGCTTGGTCCGCGCAGTGGTTCAGGAATGTGGTGCGCATTTAGTTCTCATCAGTCCGCATACTGTTCACAGAGCTTATACCGGAGAGAGTGAGCTGGCACTGCGAGAGGCTTTTGCGGAGGCCGCGTCACATACATTGTCAGGGAAGCCGTCTGTTGTGTTTATAGATGAAATCGATGCCCTCTGTCCTCGCCGTGATTCTAGAAGAGAGCAAGATGTTCGTATAGCTGCTCAACTGCGTTTACTGATGGAGTCAAAGGCTTCGTCGACACACGTACCACAAGTTGTTGTTGTTGCCTCCACCAATAGAGTGGAAGCAGTAGACCCAGCACTAAGAAGGTCTGGGCGTTTTGATGCTGAAATTGAAGTTACTACACCTACTGAAGACGAGCGCTTTCAAATTCTCAAGCTCTACACGAGAAAGATTTCTTTGGATCCTGATGTTGACCTACGAGCCTTGGCTGCAAAATGCAATGGATTTGCTGGAGCTGATCTCGAAGCTTTATGTCGTGAGGCTGCCATGTCTGCAATGAGGAGGTATCAAGATGCAGACAAAGATGTTGGTTTGCTAAGCTTAGCAAAAGAAGACTGGGAGAATGCAAAGTCTGTAGTTAATGCAAGCATAACAAGAGGTGTCACGGTGGAAATCCCCAAGGTGACATGGGAAGATATTGGGGGCTTGAAAGATTTAAAGATAAAGCTCCAGCAAGCTGTTGAGTGGCCTATTAAATATTCTACAGAGTTTTCAAGGCTGGGAATATCTCCAATACGTGGAATTCTTCTTTATGGTCCACCAGGATGTTCAAAAACCACCCTTGCCAAAGCTGCTGCAAATGCTGCCCAAGCTTCTTTTTTTTCTTTGAGTGGTGCGGAATTGTTTTCAATGTATGTTGGAGAGGGTGAAGCTCTGCTCCGCAATACCTTTCGGAGAGCTCGCCTTGCAGCACCCAGCATTATATTCTTTGATGAGGCAGATGTTGTTGCAGCCAAACGGGGTGGGAGCTCAAGCAACAGCAGTACTGTTGGAGAGAGGCTTCTATCTACTTTGCTTACTGAAATGGATGGTTTGGAGGAGGCTAAGGGAGTTTTTGTCTTGGCTGCTACAAATCGTCCTCACGCAATTGATGCTGCATTAGTTCGACCAGGACGCTTTGATTTGGTAAGAATTTGTTTCTGTCACATGATTTTCCGGTGTTATTCAATTGTTTCCTATATTCTTGAAACTTGGTATTTTCATGTAATATCGAAAGAGGTACTGGTATTTTTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04141 ko05134 map04141 map05134
Pfam Domains
Protein Families
AAA

Protein Analysis

490

Amino Acids

53.84

Weight (kDa)

7.58

Isoelectric Point (pI)

33.02

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AAA_16 PF13191 54 - 161 2.5e-06 AAA ATPase domain
AAA PF00004 57 - 192 3e-35 ATPase family associated with various cellular activities (AAA)
AAA_lid_3 PF17862 215 - 252 1.2e-14 AAA+ lid domain
AAA PF00004 327 - 454 1.8e-38 ATPase family associated with various cellular activities (AAA)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011382)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G03670 AT2G03670
fragaria_vesca FvH4_4g29870 FvH4_4g29870
malus_domestica MD13G1061600.v1.1 MD16G1060100.v1.1
prunus_persica Prupe.1G288400_v2.0.a1 Prupe.1G288400_v2.0.a1
pyrus_communis pycom16g05230
rosa_chinensis RchiOBHm_Chr4g0438121
rosa_laevigata RLG00000006386
rosa_multiflora Rmu_co8506135.1_g000001
rosa_roxburghii Rroxscaffold_5G00379260
rosa_rugosa Rorug04G0307200
rosa_samantha Rh4AG358700 Rh4BG369600 Rh4CG383700 Rh4DG364500
rosa_wichuraiana Rw0G006320 Rw0G016260

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 240
AccB1I GGYRCC 1 cut(s) 191
AccB7I CCANNNNNTGG 1 cut(s) 974
AccI GTMKAC 3 cut(s) 111, 470, 525
AccII CGCG 2 cut(s) 216, 329
AciI CCGC 7 cut(s) 69, 214, 260, 320, 327, 1073, 1117
AclWI GGATC 2 cut(s) 632, 645
AcsI RAATTY 3 cut(s) 603, 978, 1368
AcuI CTGAAG 1 cut(s) 606
AfaI GTAC 3 cut(s) 480, 1222, 1458
AfeI AGCGCT 1 cut(s) 596
AfiI CCNNNNNNNGG 3 cut(s) 194, 220, 974
AflIII ACRYGT 1 cut(s) 475
AgsI TTSAA 8 cut(s) 569, 602, 886, 951, 1008, 1086, 1404, 1424
AjnI CCWGG 2 cut(s) 997, 1345
Alw21I GWGCWC 2 cut(s) 1138, 1208
Alw26I GTCTC 1 cut(s) 155
AlwI GGATC 2 cut(s) 632, 645
AlwNI CAGNNNCTG 1 cut(s) 18
Ama87I CYCGRG 1 cut(s) 162
Aor51HI AGCGCT 1 cut(s) 596
AoxI GGCC 3 cut(s) 158, 324, 923
ApoI RAATTY 3 cut(s) 603, 978, 1368
ArsI GACNNNNNNTTYG 2 cut(s) 452, 484
Asp700I GAANNNNTTC 1 cut(s) 628
AspLEI GCGC 3 cut(s) 218, 241, 597
AspS9I GGNCC 4 cut(s) 159, 182, 211, 992
AsuC2I CCSGG 1 cut(s) 189
AsuHPI GGTGA 2 cut(s) 871, 1115
AvaI CYCGRG 1 cut(s) 162
AvaII GGWCC 3 cut(s) 182, 211, 992
BaeI ACNNNNGTAYC 2 cut(s) 462, 495
BamHI GGATCC 1 cut(s) 637
BanI GGYRCC 1 cut(s) 191
BanII GRGCYC 2 cut(s) 1138, 1208
BauI CACGAG 1 cut(s) 619
BbsI GAAGAC 2 cut(s) 594, 795
Bbv12I GWGCWC 2 cut(s) 1138, 1208
BccI CCATC 2 cut(s) 445, 1259
BceAI ACGGC 3 cut(s) 55, 337, 381
BcgI CGANNNNNNTGC 2 cut(s) 404, 438
BciT130I CCWGG 2 cut(s) 999, 1347
BcnI CCSGG 1 cut(s) 189
BcoDI GTCTC 1 cut(s) 155
BfaI CTAG 1 cut(s) 405
BfmI CTRYAG 4 cut(s) 19, 63, 810, 939
BfoI RGCGCY 1 cut(s) 598
BlpI GCTNAGC 2 cut(s) 773, 778
BmcAI AGTACT 1 cut(s) 1222
Bme1390I CCNGG 3 cut(s) 189, 999, 1347
Bme18I GGWCC 3 cut(s) 182, 211, 992
BmeT110I CYCGRG 1 cut(s) 162
BmgT120I GGNCC 4 cut(s) 159, 182, 211, 992
BmiI GGNNCC 3 cut(s) 161, 193, 639
BmrFI CCNGG 3 cut(s) 189, 999, 1347
BmrI ACTGGG 1 cut(s) 802
BmsI GCATC 5 cut(s) 33, 370, 547, 739, 1318
BmuI ACTGGG 1 cut(s) 802
BpiI GAAGAC 2 cut(s) 594, 795
BplI GAGNNNNNCTC 2 cut(s) 681, 713
BpmI CTGGAG 2 cut(s) 708, 890
Bpu10I CCTNAGC 1 cut(s) 1281
Bpu1102I GCTNAGC 2 cut(s) 773, 778
BpuEI CTTGAG 2 cut(s) 593, 1192
BpuMI CCSGG 1 cut(s) 189
Bsa29I ATCGAT 1 cut(s) 378
BsaAI YACGTR 2 cut(s) 478, 974
BsaI GGTCTC 1 cut(s) 155
BsaJI CCNNGG 3 cut(s) 163, 660, 855
BsaWI WCCGGW 3 cut(s) 194, 284, 1392
BsaXI ACNNNNNCTCC 4 cut(s) 314, 344, 1278, 1308
Bsc4I CCNNNNNNNGG 3 cut(s) 194, 220, 974
Bse1I ACTGG 2 cut(s) 797, 1464
Bse3DI GCAATG 2 cut(s) 682, 738
BseBI CCWGG 2 cut(s) 999, 1347
BseCI ATCGAT 1 cut(s) 378
BseDI CCNNGG 3 cut(s) 163, 660, 855
BseGI GGATG 2 cut(s) 1007, 1270
BseLI CCNNNNNNNGG 3 cut(s) 194, 220, 974
BseMI GCAATG 2 cut(s) 682, 738
BseMII CTCAG 1 cut(s) 109
BseNI ACTGG 2 cut(s) 797, 1464
BseRI GAGGAG 3 cut(s) 110, 751, 1289
BseYI CCCAGC 3 cut(s) 529, 955, 1151
Bsh1236I CGCG 2 cut(s) 216, 329
BshFI GGCC 3 cut(s) 160, 326, 925
BshNI GGYRCC 1 cut(s) 191
BshVI ATCGAT 1 cut(s) 378
BsiHKAI GWGCWC 2 cut(s) 1138, 1208
BsiHKCI CYCGRG 1 cut(s) 162
BsiSI CCGG 4 cut(s) 189, 195, 285, 1393
BslI CCNNNNNNNGG 3 cut(s) 194, 220, 974
BsmAI GTCTC 1 cut(s) 155
BsmI GAATGC 1 cut(s) 805
BsnI GGCC 3 cut(s) 160, 326, 925
Bso31I GGTCTC 1 cut(s) 155
BsoBI CYCGRG 1 cut(s) 162
Bsp1286I GDGCHC 2 cut(s) 1138, 1208
Bsp143I GATC 2 cut(s) 637, 694
Bsp1720I GCTNAGC 2 cut(s) 773, 778
BspACI CCGC 7 cut(s) 69, 214, 260, 320, 327, 1073, 1117
BspANI GGCC 3 cut(s) 160, 326, 925
BspCNI CTCAG 1 cut(s) 108
BspDI ATCGAT 1 cut(s) 378
BspFNI CGCG 2 cut(s) 216, 329
BspLI GGNNCC 3 cut(s) 161, 193, 639
BspPI GGATC 2 cut(s) 632, 645
BspT107I GGYRCC 1 cut(s) 191
BspTNI GGTCTC 1 cut(s) 155
BsrDI GCAATG 2 cut(s) 682, 738
BsrI ACTGG 2 cut(s) 797, 1464
BssECI CCNNGG 3 cut(s) 163, 660, 855
BssMI GATC 2 cut(s) 637, 694
BssSI CACGAG 1 cut(s) 619
BssT1I CCWWGG 2 cut(s) 660, 855
Bst2BI CACGAG 1 cut(s) 619
Bst2UI CCWGG 2 cut(s) 999, 1347
Bst4CI ACNGT 4 cut(s) 182, 268, 844, 1225
Bst6I CTCTTC 1 cut(s) 403
BstAPI GCANNNNNTGC 2 cut(s) 1040, 1328
BstBAI YACGTR 2 cut(s) 478, 974
BstC8I GCNNGC 4 cut(s) 300, 823, 912, 1138
BstDEI CTNAG 5 cut(s) 95, 536, 773, 778, 1281
BstF5I GGATG 2 cut(s) 1007, 1270
BstFNI CGCG 2 cut(s) 216, 329
BstH2I RGCGCY 1 cut(s) 598
BstHHI GCGC 3 cut(s) 218, 241, 597
BstKTI GATC 2 cut(s) 640, 697
BstMAI GTCTC 1 cut(s) 155
BstMBI GATC 2 cut(s) 637, 694
BstNI CCWGG 2 cut(s) 999, 1347
BstSCI CCNGG 3 cut(s) 187, 997, 1345
BstSFI CTRYAG 4 cut(s) 19, 63, 810, 939
BstUI CGCG 2 cut(s) 216, 329
BstV2I GAAGAC 2 cut(s) 594, 795
BstX2I RGATCY 1 cut(s) 637
BstXI CCANNNNNNTGG 1 cut(s) 514
BstYI RGATCY 1 cut(s) 637
Bsu15I ATCGAT 1 cut(s) 378
BsuRI GGCC 3 cut(s) 160, 326, 925
BsuTUI ATCGAT 1 cut(s) 378
BtsCI GGATG 2 cut(s) 1007, 1270
BtsI GCAGTG 2 cut(s) 225, 302
BtsIMutI CAGTG 2 cut(s) 225, 302
Cac8I GCNNGC 4 cut(s) 300, 823, 912, 1138
CaiI CAGNNNCTG 1 cut(s) 18
CfoI GCGC 3 cut(s) 218, 241, 597
Cfr13I GGNCC 4 cut(s) 159, 182, 211, 992
ClaI ATCGAT 1 cut(s) 378
CseI GACGC 2 cut(s) 318, 1359
Csp6I GTAC 3 cut(s) 479, 1221, 1457
CspCI CAANNNNNGTGG 2 cut(s) 1180, 1215
CviAII CATG 4 cut(s) 724, 864, 1384, 1439
CviQI GTAC 3 cut(s) 479, 1221, 1457
DdeI CTNAG 5 cut(s) 95, 536, 773, 778, 1281
DpnI GATC 2 cut(s) 639, 696
DpnII GATC 2 cut(s) 637, 694
DraI TTTAAA 1 cut(s) 894
Eam1104I CTCTTC 1 cut(s) 403
EarI CTCTTC 1 cut(s) 403
Ecl136II GAGCTC 2 cut(s) 1136, 1206
Eco130I CCWWGG 2 cut(s) 660, 855
Eco24I GRGCYC 2 cut(s) 1138, 1208
Eco31I GGTCTC 1 cut(s) 155
Eco47I GGWCC 3 cut(s) 182, 211, 992
Eco47III AGCGCT 1 cut(s) 596
Eco53kI GAGCTC 2 cut(s) 1136, 1206
Eco57I CTGAAG 1 cut(s) 606
Eco88I CYCGRG 1 cut(s) 162
EcoICRI GAGCTC 2 cut(s) 1136, 1206
EcoRI GAATTC 1 cut(s) 978
EcoRII CCWGG 2 cut(s) 997, 1345
EcoT14I CCWWGG 2 cut(s) 660, 855
EcoT38I GRGCYC 2 cut(s) 1138, 1208
ErhI CCWWGG 2 cut(s) 660, 855
FaeI CATG 4 cut(s) 727, 867, 1387, 1442
FalI AAGNNNNNCTT 2 cut(s) 191, 223
FatI CATG 4 cut(s) 723, 863, 1383, 1438
FblI GTMKAC 3 cut(s) 111, 470, 525
FokI GGATG 2 cut(s) 1014, 1277
FriOI GRGCYC 2 cut(s) 1138, 1208
FspAI RTGCGCAY 1 cut(s) 240
FspBI CTAG 1 cut(s) 405
FspI TGCGCA 1 cut(s) 240
GlaI GCGC 3 cut(s) 217, 240, 596
GsaI CCCAGC 3 cut(s) 533, 959, 1155
GsuI CTGGAG 2 cut(s) 708, 890
HaeII RGCGCY 1 cut(s) 598
HaeIII GGCC 3 cut(s) 160, 326, 925
HapII CCGG 4 cut(s) 189, 195, 285, 1393
HgaI GACGC 2 cut(s) 318, 1359
HhaI GCGC 3 cut(s) 218, 241, 597
Hin1II CATG 4 cut(s) 727, 867, 1387, 1442
Hin6I GCGC 3 cut(s) 216, 239, 595
HinP1I GCGC 3 cut(s) 216, 239, 595
HincII GTYRAC 2 cut(s) 471, 649
HindII GTYRAC 2 cut(s) 471, 649
HindIII AAGCTT 4 cut(s) 205, 702, 775, 1047
HinfI GANTC 2 cut(s) 401, 455
HpaII CCGG 4 cut(s) 189, 195, 285, 1393
HphI GGTGA 2 cut(s) 871, 1115
Hpy166II GTNNAC 7 cut(s) 112, 271, 446, 471, 526, 649, 995
Hpy188I TCNGA 3 cut(s) 98, 1131, 1472
Hpy188III TCNNGA 7 cut(s) 227, 405, 641, 698, 713, 746, 1421
Hpy8I GTNNAC 7 cut(s) 112, 271, 446, 471, 526, 649, 995
Hpy99I CGWCG 3 cut(s) 38, 41, 472
HpyAV CCTTC 1 cut(s) 534
HpyCH4III ACNGT 4 cut(s) 182, 268, 844, 1225
HpyCH4IV ACGT 2 cut(s) 477, 973
HpyF3I CTNAG 5 cut(s) 95, 536, 773, 778, 1281
HpySE526I ACGT 2 cut(s) 477, 973
Hsp92II CATG 4 cut(s) 727, 867, 1387, 1442
HspAI GCGC 3 cut(s) 216, 239, 595
Kzo9I GATC 2 cut(s) 637, 694
LmnI GCTCC 5 cut(s) 20, 689, 909, 1119, 1203
LweI GCATC 5 cut(s) 33, 370, 547, 739, 1318
MaeI CTAG 1 cut(s) 405
MaeII ACGT 2 cut(s) 477, 973
MaeIII GTNAC 5 cut(s) 330, 571, 838, 859, 1379
MalI GATC 2 cut(s) 639, 696
MboI GATC 2 cut(s) 637, 694
MboII GAAGA 5 cut(s) 420, 599, 800, 881, 974
MfeI CAATTG 2 cut(s) 1323, 1404
MflI RGATCY 1 cut(s) 637
MhlI GDGCHC 2 cut(s) 1138, 1208
MluCI AATT 7 cut(s) 564, 603, 978, 1076, 1323, 1368, 1404
MlyI GAGTC 1 cut(s) 464
MmeI TCCRAC 2 cut(s) 1075, 1207
MroXI GAANNNNTTC 1 cut(s) 628
MseI TTAA 3 cut(s) 816, 893, 930
MslI CAYNNNNRTG 1 cut(s) 1000
MspI CCGG 4 cut(s) 189, 195, 285, 1393
MspR9I CCNGG 3 cut(s) 189, 999, 1347
MunI CAATTG 2 cut(s) 1323, 1404
Mva1269I GAATGC 1 cut(s) 805
MvaI CCWGG 2 cut(s) 999, 1347
MvnI CGCG 2 cut(s) 216, 329
NciI CCSGG 1 cut(s) 189
NdeII GATC 2 cut(s) 637, 694
NlaIII CATG 4 cut(s) 727, 867, 1387, 1442
NlaIV GGNNCC 3 cut(s) 161, 193, 639
NmuCI GTSAC 4 cut(s) 330, 838, 859, 1379
NsbI TGCGCA 1 cut(s) 240
PcsI WCGNNNNNNNCGW 1 cut(s) 39
PctI GAATGC 1 cut(s) 805
PdmI GAANNNNTTC 1 cut(s) 628
PfeI GAWTC 1 cut(s) 401
PflMI CCANNNNNTGG 1 cut(s) 974
PleI GAGTC 1 cut(s) 463
PpsI GAGTC 1 cut(s) 463
Ppu21I YACGTR 2 cut(s) 478, 974
Psp124BI GAGCTC 2 cut(s) 1138, 1208
Psp6I CCWGG 2 cut(s) 997, 1345
PspFI CCCAGC 3 cut(s) 529, 955, 1151
PspGI CCWGG 2 cut(s) 997, 1345
PspN4I GGNNCC 3 cut(s) 161, 193, 639
PspPI GGNCC 4 cut(s) 159, 182, 211, 992
PstNI CAGNNNCTG 1 cut(s) 18
PsuI RGATCY 1 cut(s) 637
RsaI GTAC 3 cut(s) 480, 1222, 1458
RsaNI GTAC 3 cut(s) 479, 1221, 1457
RseI CAYNNNNRTG 1 cut(s) 1000
SacI GAGCTC 2 cut(s) 1138, 1208
SalI GTCGAC 1 cut(s) 469
SaqAI TTAA 3 cut(s) 816, 893, 930
Sau3AI GATC 2 cut(s) 637, 694
Sau96I GGNCC 4 cut(s) 159, 182, 211, 992
ScaI AGTACT 1 cut(s) 1222
SchI GAGTC 1 cut(s) 464
ScrFI CCNGG 3 cut(s) 189, 999, 1347
SduI GDGCHC 2 cut(s) 1138, 1208
SfaNI GCATC 5 cut(s) 33, 370, 547, 739, 1318
SfcI CTRYAG 4 cut(s) 19, 63, 810, 939
SinI GGWCC 3 cut(s) 182, 211, 992
SmiMI CAYNNNNRTG 1 cut(s) 1000
SmlI CTYRAG 2 cut(s) 608, 1207
SmoI CTYRAG 2 cut(s) 608, 1207
Sse9I AATT 7 cut(s) 564, 603, 978, 1076, 1323, 1368, 1404
SsiI CCGC 7 cut(s) 69, 214, 260, 320, 327, 1073, 1117
SspI AATATT 1 cut(s) 935
SspMI CTAG 1 cut(s) 405
SstI GAGCTC 2 cut(s) 1138, 1208
StyD4I CCNGG 3 cut(s) 187, 997, 1345
StyI CCWWGG 2 cut(s) 660, 855
TaaI ACNGT 4 cut(s) 182, 268, 844, 1225
TaiI ACGT 2 cut(s) 480, 976
TaqI TCGA 5 cut(s) 378, 470, 699, 1342, 1448
TaqII GACCGA 1 cut(s) 137
TasI AATT 7 cut(s) 564, 603, 978, 1076, 1323, 1368, 1404
TatI WGTACW 1 cut(s) 1220
TauI GCSGC 2 cut(s) 72, 329
TfiI GAWTC 1 cut(s) 401
Tru1I TTAA 3 cut(s) 816, 893, 930
Tru9I TTAA 3 cut(s) 816, 893, 930
TscAI CASTG 2 cut(s) 225, 309
TseFI GTSAC 4 cut(s) 330, 838, 859, 1379
Tsp45I GTSAC 4 cut(s) 330, 838, 859, 1379
TspDTI ATGAA 2 cut(s) 387, 1427
TspRI CASTG 2 cut(s) 225, 309
Van91I CCANNNNNTGG 1 cut(s) 974
VpaK11BI GGWCC 3 cut(s) 182, 211, 992
XapI RAATTY 3 cut(s) 603, 978, 1368
XbaI TCTAGA 1 cut(s) 404
XcmI CCANNNNNNNNNTGG 1 cut(s) 511
XmiI GTMKAC 3 cut(s) 111, 470, 525
XmnI GAANNNNTTC 1 cut(s) 628
XspI CTAG 1 cut(s) 405
ZrmI AGTACT 1 cut(s) 1222
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.