Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr13

Orthogroup ID

OG0018431

Physical Location & Seq

Genomic Coordinates Reverse (-)

6201311 .. 6202815

Gene Structure 1505 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD13G1088800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 438 bp

ATGAACATGAGCATGAAGATTTTACTTCCTTTTATTGGAATGGTGATGGCGATTATGGCTCAGACTGGGAGTGTGGTAGTAAACAAAGCAGCGATGTCCACAGGGACCAATGCATACATCATCGTCGTCTATGCCAACGCGGTCGCCGCCCTCATTCTTCTCCCTTCTGCTCTCATCTTCCACAGATCGGAGCGCCCTCCCCTTACATTCTCCATACTCTGCAGAATCTTCTTGCTTGGCCTGTTTTGTTGTTCAGCACAAATATTTGGAAATATTGGCATAGAATACAGCTCTCCCACGCTTAGCACGGCCATGCTTAACCTCATCCCAGCTTTTCTTTCGGTCAGCTGCCTGTATGGGTATGCACGCTCCATTGTTACACTGATTGGAAGAGAAAATGAAAGTGATGGAATTAGATTAACATTTTATGTTACGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0005887 GO:0005938 GO:0007154 GO:0007165 GO:0008150 GO:0009719 GO:0009725 GO:0009733 GO:0009734 GO:0009755 GO:0009987 GO:0010033 GO:0016020 GO:0016021 GO:0023052 GO:0031224 GO:0031226 GO:0032870 GO:0042221 GO:0044424 GO:0044425 GO:0044444 GO:0044459 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0070887 GO:0071310 GO:0071365 GO:0071495 GO:0071944 GO:0099568

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EamA

Protein Analysis

146

Amino Acids

15.71

Weight (kDa)

8.8

Isoelectric Point (pI)

53.17

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0018431)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g34870 FvH4_4g34870 FvH4_4g34870
malus_domestica	MD13G1088800.v1.1
pyrus_communis	pycom13g07660
rosa_laevigata	RLG00000005844 RLG00000005845
rosa_rugosa	Rorug04G0351300
rosa_samantha	Rh4BG423400 Rh4CG437700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	140
AciI	CCGC	2 cut(s)	140, 147
AcoI	YGGCCR	1 cut(s)	309
AfiI	CCNNNNNNNGG	2 cut(s)	35, 187
AluBI	AGCT	3 cut(s)	291, 332, 348
AluI	AGCT	3 cut(s)	291, 332, 348
AoxI	GGCC	2 cut(s)	238, 309
ApeKI	GCWGC	2 cut(s)	89, 348
AspLEI	GCGC	1 cut(s)	195
AspS9I	GGNCC	1 cut(s)	105
AsuHPI	GGTGA	1 cut(s)	55
AvaII	GGWCC	1 cut(s)	105
BbvI	GCAGC	2 cut(s)	101, 335
BccI	CCATC	2 cut(s)	40, 401
BceAI	ACGGC	1 cut(s)	324
BfmI	CTRYAG	1 cut(s)	220
BfoI	RGCGCY	1 cut(s)	196
BisI	GCNGC	3 cut(s)	90, 147, 349
BlpI	GCTNAGC	1 cut(s)	302
BlsI	GCNGC	3 cut(s)	91, 148, 350
Bme18I	GGWCC	1 cut(s)	105
BmgT120I	GGNCC	1 cut(s)	105
BmiI	GGNNCC	1 cut(s)	106
BmrI	ACTGGG	1 cut(s)	75
BmuI	ACTGGG	1 cut(s)	75
Bpu1102I	GCTNAGC	1 cut(s)	302
BsaAI	YACGTR	1 cut(s)	435
Bsc4I	CCNNNNNNNGG	2 cut(s)	35, 187
Bse1I	ACTGG	1 cut(s)	70
BseGI	GGATG	1 cut(s)	324
BseLI	CCNNNNNNNGG	2 cut(s)	35, 187
BseMII	CTCAG	1 cut(s)	74
BseNI	ACTGG	1 cut(s)	70
BseXI	GCAGC	2 cut(s)	101, 335
BseYI	CCCAGC	1 cut(s)	328
Bsh1236I	CGCG	1 cut(s)	140
Bsh1285I	CGRYCG	1 cut(s)	144
BshFI	GGCC	2 cut(s)	240, 311
BsiEI	CGRYCG	1 cut(s)	144
BslFI	GGGAC	1 cut(s)	118
BslI	CCNNNNNNNGG	2 cut(s)	35, 187
BsmFI	GGGAC	1 cut(s)	118
BsnI	GGCC	2 cut(s)	240, 311
Bsp143I	GATC	1 cut(s)	185
Bsp1720I	GCTNAGC	1 cut(s)	302
BspACI	CCGC	2 cut(s)	140, 147
BspANI	GGCC	2 cut(s)	240, 311
BspCNI	CTCAG	1 cut(s)	73
BspFNI	CGCG	1 cut(s)	140
BspLI	GGNNCC	1 cut(s)	106
BspMAI	CTGCAG	1 cut(s)	224
BsrI	ACTGG	1 cut(s)	70
BssMI	GATC	1 cut(s)	185
Bst6I	CTCTTC	1 cut(s)	385
BstBAI	YACGTR	1 cut(s)	435
BstC8I	GCNNGC	1 cut(s)	367
BstDEI	CTNAG	2 cut(s)	60, 302
BstF5I	GGATG	1 cut(s)	324
BstFNI	CGCG	1 cut(s)	140
BstH2I	RGCGCY	1 cut(s)	196
BstHHI	GCGC	1 cut(s)	195
BstKTI	GATC	1 cut(s)	188
BstMBI	GATC	1 cut(s)	185
BstMCI	CGRYCG	1 cut(s)	144
BstMWI	GCNNNNNNNGC	2 cut(s)	56, 146
BstSFI	CTRYAG	1 cut(s)	220
BstSNI	TACGTA	1 cut(s)	435
BstUI	CGCG	1 cut(s)	140
BstV1I	GCAGC	2 cut(s)	101, 335
BsuRI	GGCC	2 cut(s)	240, 311
BtgZI	GCGATG	1 cut(s)	107
BtsCI	GGATG	1 cut(s)	324
BtsIMutI	CAGTG	1 cut(s)	380
Cac8I	GCNNGC	1 cut(s)	367
CfoI	GCGC	1 cut(s)	195
Cfr13I	GGNCC	1 cut(s)	105
CviAII	CATG	3 cut(s)	7, 13, 313
CviJI	RGCY	6 cut(s)	59, 240, 291, 311, 332, 348
CviKI_1	RGCY	6 cut(s)	59, 240, 291, 311, 332, 348
DdeI	CTNAG	2 cut(s)	60, 302
DpnI	GATC	1 cut(s)	187
DpnII	GATC	1 cut(s)	185
EaeI	YGGCCR	1 cut(s)	309
Eam1104I	CTCTTC	1 cut(s)	385
EarI	CTCTTC	1 cut(s)	385
Eco105I	TACGTA	1 cut(s)	435
Eco47I	GGWCC	1 cut(s)	105
EcoT22I	ATGCAT	1 cut(s)	115
FaeI	CATG	3 cut(s)	10, 16, 316
FaqI	GGGAC	1 cut(s)	118
FatI	CATG	3 cut(s)	6, 12, 312
Fnu4HI	GCNGC	3 cut(s)	90, 147, 349
FokI	GGATG	1 cut(s)	311
Fsp4HI	GCNGC	3 cut(s)	90, 147, 349
GlaI	GCGC	1 cut(s)	194
GluI	GCNGC	3 cut(s)	90, 147, 349
GsaI	CCCAGC	1 cut(s)	332
HaeII	RGCGCY	1 cut(s)	196
HaeIII	GGCC	2 cut(s)	240, 311
HhaI	GCGC	1 cut(s)	195
Hin1II	CATG	3 cut(s)	10, 16, 316
Hin6I	GCGC	1 cut(s)	193
HinP1I	GCGC	1 cut(s)	193
HinfI	GANTC	1 cut(s)	225
HphI	GGTGA	1 cut(s)	55
Hpy166II	GTNNAC	2 cut(s)	82, 99
Hpy188I	TCNGA	2 cut(s)	63, 190
Hpy8I	GTNNAC	2 cut(s)	82, 99
Hpy99I	CGWCG	1 cut(s)	128
HpyAV	CCTTC	1 cut(s)	174
HpyCH4IV	ACGT	1 cut(s)	434
HpyCH4V	TGCA	3 cut(s)	113, 222, 365
HpyF10VI	GCNNNNNNNGC	2 cut(s)	56, 146
HpyF3I	CTNAG	2 cut(s)	60, 302
HpySE526I	ACGT	1 cut(s)	434
Hsp92II	CATG	3 cut(s)	10, 16, 316
HspAI	GCGC	1 cut(s)	193
Kzo9I	GATC	1 cut(s)	185
LmnI	GCTCC	2 cut(s)	190, 374
LpnPI	CCDG	5 cut(s)	51, 87, 254, 342, 365
Lsp1109I	GCAGC	2 cut(s)	101, 335
MaeII	ACGT	1 cut(s)	434
MaeIII	GTNAC	2 cut(s)	376, 430
MalI	GATC	1 cut(s)	187
MboI	GATC	1 cut(s)	185
MboII	GAAGA	5 cut(s)	28, 149, 169, 220, 402
MluCI	AATT	1 cut(s)	411
MnlI	CCTC	3 cut(s)	161, 207, 332
Mph1103I	ATGCAT	1 cut(s)	115
MseI	TTAA	2 cut(s)	318, 419
MslI	CAYNNNNRTG	2 cut(s)	11, 311
MspA1I	CMGCKG	1 cut(s)	348
MvnI	CGCG	1 cut(s)	140
MwoI	GCNNNNNNNGC	2 cut(s)	56, 146
NdeII	GATC	1 cut(s)	185
NlaIII	CATG	3 cut(s)	10, 16, 316
NlaIV	GGNNCC	1 cut(s)	106
NsiI	ATGCAT	1 cut(s)	115
PfeI	GAWTC	1 cut(s)	225
PkrI	GCNGC	3 cut(s)	91, 148, 350
Ppu21I	YACGTR	1 cut(s)	435
PspFI	CCCAGC	1 cut(s)	328
PspN4I	GGNNCC	1 cut(s)	106
PspPI	GGNCC	1 cut(s)	105
PstI	CTGCAG	1 cut(s)	224
PvuII	CAGCTG	1 cut(s)	348
RseI	CAYNNNNRTG	2 cut(s)	11, 311
SaqAI	TTAA	2 cut(s)	318, 419
SatI	GCNGC	3 cut(s)	90, 147, 349
Sau3AI	GATC	1 cut(s)	185
Sau96I	GGNCC	1 cut(s)	105
SetI	ASST	5 cut(s)	293, 324, 334, 350, 437
SfcI	CTRYAG	1 cut(s)	220
SinI	GGWCC	1 cut(s)	105
SmiMI	CAYNNNNRTG	2 cut(s)	11, 311
SnaBI	TACGTA	1 cut(s)	435
Sse9I	AATT	1 cut(s)	411
SsiI	CCGC	2 cut(s)	140, 147
SspI	AATATT	2 cut(s)	264, 274
TaiI	ACGT	1 cut(s)	437
TaqII	GACCGA	1 cut(s)	331
TasI	AATT	1 cut(s)	411
TauI	GCSGC	1 cut(s)	149
TfiI	GAWTC	1 cut(s)	225
Tru1I	TTAA	2 cut(s)	318, 419
Tru9I	TTAA	2 cut(s)	318, 419
TscAI	CASTG	1 cut(s)	387
TseI	GCWGC	2 cut(s)	89, 348
TspDTI	ATGAA	3 cut(s)	17, 29, 414
TspRI	CASTG	1 cut(s)	387
VpaK11BI	GGWCC	1 cut(s)	105
Zsp2I	ATGCAT	1 cut(s)	115

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.