Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0001686

Physical Location & Seq

Genomic Coordinates Forward (+)

32413080 .. 32416359

Gene Structure 3280 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g34870.t11

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1059 bp

ATGGCTAAGATTGCAGCACTACCAATAGTGGGGATGGTGCTAGCTGAGTGTGCCCAAGCTGGGTTAATGATAGTAAGCAAAGCAGCCATGTCTACTGGCATGAACATGCTCATCTTTGTCTGCTACTCCAATGCTCTTGCCGCCTTTGTTCTTCTCCCAACTTCTCTACTCTTTCACAGATCAACAGAGCGGCCTCCGATCACTTTCTCTATTCTCTGTTGGTTCTTCTTGCTGGGTTTACTTGGGTTTATGGCTCAGTTAATTGGGTATGCTGGGATTAACTACAGCTCTCCTACTCTTGGCACGGCTATGCTCAACCTAATTCCAGCTTTCACTTTTGTACTTGCTGTTATATTCAGAATGGAAAAAATTGATGGGAGAAGCTGCAGTACCCTAGCTAAAACCTTGGGAACAATAGTTTCAATATCTGGGGCTTTCATTGTGACTCTTTACAAGGGACCCCCACTTTTGATGACAGCCTCAGTTGATATGTTGTCTCACAATCAACTTTTCTTGCCACAGTCGAATTGGGTCATTGGAGGAATGCTTCTTGGGTTGCATTGTGTGGTGGCCGCAGCATGGCTTATCATACAGGCATCAGTACTAAAAAAATACCCAGCAGAGCTCATTATAGTCTTTTACTATTGCTTCTTTGTGGCTATTCAATCTGTAGTGGTGTTGTGGTTTGTGGAGAGAGACTTAAGTGCTTGGGCCTTAAACTCTAGATTAAGGTTCTTTGCTGTTCTATACTCGGGAGTTTTTGGATCAGCGTTCCAGGTTGGTGTATCTACGTGGTGTCTTAACAGGACAGGGCCAGTTTTCGTATCTATGTTCAAGCCTCTGGGGATTGTAGTTGCAGTTGCCATTGGTGTTATCTTCTTGGGTGATACTTTCTACCTTGGAAGTTTGATAGGAGCAAGTGTAATTGTCACTGGATTTTACTCTGTGATATGGGGCAAAGCCAATGAGGAGAAGATGAATGATGAAGCAGGGGCTGGGAGTTTGACATCAAAGAAACAGCGGGTTCCATTACTGCATAACATTATTGACGAAATCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0005887 GO:0005938 GO:0006810 GO:0007154 GO:0007165 GO:0008150 GO:0009719 GO:0009725 GO:0009733 GO:0009734 GO:0009755 GO:0009987 GO:0010033 GO:0016020 GO:0016021 GO:0022857 GO:0023052 GO:0031224 GO:0031226 GO:0032870 GO:0042221 GO:0044424 GO:0044425 GO:0044444 GO:0044459 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0051716 GO:0055085 GO:0065007 GO:0070887 GO:0071310 GO:0071365 GO:0071495 GO:0071944 GO:0099568

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EamA

Protein Analysis

353

Amino Acids

38.18

Weight (kDa)

8.94

Isoelectric Point (pI)

32.06

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EamA	PF00892	10 - 149	1.3e-09	EamA-like transporter family
EamA	PF00892	182 - 316	3.3e-08	EamA-like transporter family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001686)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g34870 FvH4_4g34870 FvH4_4g34870 FvH4_4g34870 FvH4_4g34870 FvH4_4g34870 FvH4_4g34870 FvH4_4g34870
malus_domestica	MD13G1088500.v1.1 MD13G1088700.v1.1 MD16G1088800.v1.1 MD16G1088900.v1.1
prunus_persica	Prupe.1G257200_v2.0.a1 Prupe.1G257300_v2.0.a1 Prupe.1G257400_v2.0.a1 Prupe.1G257500_v2.0.a1 Prupe.1G257600_v2.0.a1 Prupe.1G257700_v2.0.a1
pyrus_communis	pycom13g07640 pycom13g07650 pycom16g07610
rosa_chinensis	RchiOBHm_Chr4g0411271 RchiOBHm_Chr4g0444271 RchiOBHm_Chr4g0444291 RchiOBHm_Chr4g0444301
rosa_laevigata	RLG00000005843
rosa_multiflora	Rmu_sc0002841.1_g000015
rosa_roxburghii	Rroxscaffold_5G00384840 Rroxscaffold_5G00384850
rosa_rugosa	Rorug03G0072000 Rorug03G0072100 Rorug04G0351100 Rorug04G0351200 Rorug04G0351300 Rorug04G0351300 Rorug04G0351300 Rorug04G0351300 Rorug07G0109600
rosa_samantha	Rh1BG171600 Rh4AG412000 Rh4BG070500 Rh4BG423500 Rh4CG078800 Rh4DG418700 Rh4DG418800
rosa_wichuraiana	Rw2G039380 Rw4G013770 Rw4G035390 Rw5G040980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	190
AccI	GTMKAC	1 cut(s)	92
AciI	CCGC	4 cut(s)	141, 190, 573, 1021
AclWI	GGATC	1 cut(s)	772
AcoI	YGGCCR	1 cut(s)	570
AfaI	GTAC	3 cut(s)	342, 391, 603
AfiI	CCNNNNNNNGG	4 cut(s)	29, 60, 299, 579
AflII	CTTAAG	1 cut(s)	700
AgsI	TTSAA	3 cut(s)	423, 665, 835
AjnI	CCWGG	1 cut(s)	774
AluBI	AGCT	7 cut(s)	44, 59, 288, 329, 384, 398, 625
AluI	AGCT	7 cut(s)	44, 59, 288, 329, 384, 398, 625
Alw21I	GWGCWC	1 cut(s)	627
Alw26I	GTCTC	2 cut(s)	501, 690
AlwI	GGATC	1 cut(s)	772
AlwNI	CAGNNNCTG	1 cut(s)	995
Ama87I	CYCGRG	1 cut(s)	751
AoxI	GGCC	4 cut(s)	191, 570, 711, 812
ApeKI	GCWGC	4 cut(s)	14, 83, 384, 575
AspS9I	GGNCC	3 cut(s)	458, 711, 812
AsuHPI	GGTGA	1 cut(s)	896
AsuNHI	GCTAGC	1 cut(s)	40
AvaI	CYCGRG	1 cut(s)	751
AvaII	GGWCC	1 cut(s)	458
BaeGI	GKGCMC	1 cut(s)	55
BanII	GRGCYC	1 cut(s)	627
BarI	GAAGNNNNNNTAC	2 cut(s)	373, 405
Bbv12I	GWGCWC	1 cut(s)	627
BbvI	GCAGC	4 cut(s)	26, 95, 371, 587
BccI	CCATC	2 cut(s)	28, 368
BceAI	ACGGC	1 cut(s)	321
BciT130I	CCWGG	1 cut(s)	776
BcoDI	GTCTC	2 cut(s)	501, 690
BfaI	CTAG	4 cut(s)	41, 395, 723, 1057
BfmI	CTRYAG	3 cut(s)	283, 385, 669
BfrI	CTTAAG	1 cut(s)	700
BisI	GCNGC	7 cut(s)	15, 84, 141, 191, 385, 573, 576
BlsI	GCNGC	7 cut(s)	16, 85, 142, 192, 386, 574, 577
BmcAI	AGTACT	1 cut(s)	603
Bme1390I	CCNGG	1 cut(s)	776
Bme18I	GGWCC	1 cut(s)	458
BmeT110I	CYCGRG	1 cut(s)	751
BmgT120I	GGNCC	3 cut(s)	458, 711, 812
BmiI	GGNNCC	3 cut(s)	459, 460, 1026
BmrFI	CCNGG	1 cut(s)	776
BmsI	GCATC	1 cut(s)	605
BmtI	GCTAGC	1 cut(s)	44
BsaAI	YACGTR	1 cut(s)	792
BsaJI	CCNNGG	2 cut(s)	405, 898
BsaXI	ACNNNNNCTCC	2 cut(s)	906, 936
Bsc4I	CCNNNNNNNGG	4 cut(s)	29, 60, 299, 579
Bse1I	ACTGG	3 cut(s)	100, 815, 937
BseBI	CCWGG	1 cut(s)	776
BseDI	CCNNGG	2 cut(s)	405, 898
BseGI	GGATG	1 cut(s)	39
BseLI	CCNNNNNNNGG	4 cut(s)	29, 60, 299, 579
BseMII	CTCAG	3 cut(s)	36, 269, 495
BseNI	ACTGG	3 cut(s)	100, 815, 937
BseRI	GAGGAG	1 cut(s)	983
BseSI	GKGCMC	1 cut(s)	55
BseXI	GCAGC	4 cut(s)	26, 95, 371, 587
BseYI	CCCAGC	5 cut(s)	59, 232, 272, 616, 995
BshFI	GGCC	4 cut(s)	193, 572, 713, 814
BsiHKAI	GWGCWC	1 cut(s)	627
BsiHKCI	CYCGRG	1 cut(s)	751
BslFI	GGGAC	1 cut(s)	471
BslI	CCNNNNNNNGG	4 cut(s)	29, 60, 299, 579
BsmAI	GTCTC	2 cut(s)	501, 690
BsmFI	GGGAC	1 cut(s)	471
BsmI	GAATGC	1 cut(s)	549
BsnI	GGCC	4 cut(s)	193, 572, 713, 814
BsoBI	CYCGRG	1 cut(s)	751
Bsp1286I	GDGCHC	2 cut(s)	55, 627
Bsp143I	GATC	3 cut(s)	179, 198, 764
BspACI	CCGC	4 cut(s)	141, 190, 573, 1021
BspANI	GGCC	4 cut(s)	193, 572, 713, 814
BspCNI	CTCAG	3 cut(s)	37, 268, 494
BspLI	GGNNCC	3 cut(s)	459, 460, 1026
BspMAI	CTGCAG	1 cut(s)	389
BspOI	GCTAGC	1 cut(s)	44
BspPI	GGATC	1 cut(s)	772
BspTI	CTTAAG	1 cut(s)	700
BsrBI	CCGCTC	1 cut(s)	190
BsrI	ACTGG	3 cut(s)	100, 815, 937
BssECI	CCNNGG	2 cut(s)	405, 898
BssMI	GATC	3 cut(s)	179, 198, 764
BssT1I	CCWWGG	2 cut(s)	405, 898
Bst2UI	CCWGG	1 cut(s)	776
Bst4CI	ACNGT	1 cut(s)	522
BstAFI	CTTAAG	1 cut(s)	700
BstBAI	YACGTR	1 cut(s)	792
BstC8I	GCNNGC	1 cut(s)	42
BstDEI	CTNAG	4 cut(s)	6, 45, 255, 481
BstF5I	GGATG	1 cut(s)	39
BstKTI	GATC	3 cut(s)	182, 201, 767
BstMAI	GTCTC	2 cut(s)	501, 690
BstMBI	GATC	3 cut(s)	179, 198, 764
BstMWI	GCNNNNNNNGC	3 cut(s)	11, 50, 140
BstNI	CCWGG	1 cut(s)	776
BstNSI	RCATGY	1 cut(s)	109
BstSCI	CCNGG	1 cut(s)	774
BstSFI	CTRYAG	3 cut(s)	283, 385, 669
BstSLI	GKGCMC	1 cut(s)	55
BstV1I	GCAGC	4 cut(s)	26, 95, 371, 587
BsuRI	GGCC	4 cut(s)	193, 572, 713, 814
BtsCI	GGATG	1 cut(s)	39
BtsIMutI	CAGTG	1 cut(s)	930
Cac8I	GCNNGC	1 cut(s)	42
CaiI	CAGNNNCTG	1 cut(s)	995
Cfr13I	GGNCC	3 cut(s)	458, 711, 812
Csp6I	GTAC	3 cut(s)	341, 390, 602
CviAII	CATG	4 cut(s)	88, 100, 106, 579
CviQI	GTAC	3 cut(s)	341, 390, 602
DdeI	CTNAG	4 cut(s)	6, 45, 255, 481
DpnI	GATC	3 cut(s)	181, 200, 766
DpnII	GATC	3 cut(s)	179, 198, 764
EaeI	YGGCCR	1 cut(s)	570
Ecl136II	GAGCTC	1 cut(s)	625
Eco130I	CCWWGG	2 cut(s)	405, 898
Eco24I	GRGCYC	1 cut(s)	627
Eco47I	GGWCC	1 cut(s)	458
Eco53kI	GAGCTC	1 cut(s)	625
Eco88I	CYCGRG	1 cut(s)	751
EcoICRI	GAGCTC	1 cut(s)	625
EcoO109I	RGGNCCY	1 cut(s)	458
EcoRII	CCWGG	1 cut(s)	774
EcoT14I	CCWWGG	2 cut(s)	405, 898
EcoT38I	GRGCYC	1 cut(s)	627
ErhI	CCWWGG	2 cut(s)	405, 898
FaeI	CATG	4 cut(s)	91, 103, 109, 582
FaqI	GGGAC	1 cut(s)	471
FatI	CATG	4 cut(s)	87, 99, 105, 578
FauI	CCCGC	1 cut(s)	1014
FblI	GTMKAC	1 cut(s)	92
Fnu4HI	GCNGC	7 cut(s)	15, 84, 141, 191, 385, 573, 576
FokI	GGATG	1 cut(s)	46
FriOI	GRGCYC	1 cut(s)	627
Fsp4HI	GCNGC	7 cut(s)	15, 84, 141, 191, 385, 573, 576
FspBI	CTAG	4 cut(s)	41, 395, 723, 1057
GluI	GCNGC	7 cut(s)	15, 84, 141, 191, 385, 573, 576
GsaI	CCCAGC	5 cut(s)	63, 236, 276, 620, 999
HaeIII	GGCC	4 cut(s)	193, 572, 713, 814
Hin1II	CATG	4 cut(s)	91, 103, 109, 582
HinfI	GANTC	1 cut(s)	445
HphI	GGTGA	1 cut(s)	896
Hpy166II	GTNNAC	2 cut(s)	93, 239
Hpy188I	TCNGA	2 cut(s)	198, 359
Hpy188III	TCNNGA	2 cut(s)	723, 753
Hpy8I	GTNNAC	2 cut(s)	93, 239
HpyCH4III	ACNGT	1 cut(s)	522
HpyCH4IV	ACGT	1 cut(s)	791
HpyCH4V	TGCA	5 cut(s)	14, 387, 559, 857, 1036
HpyF10VI	GCNNNNNNNGC	3 cut(s)	11, 50, 140
HpyF3I	CTNAG	4 cut(s)	6, 45, 255, 481
HpySE526I	ACGT	1 cut(s)	791
Hsp92II	CATG	4 cut(s)	91, 103, 109, 582
KflI	GGGWCCC	1 cut(s)	458
Kzo9I	GATC	3 cut(s)	179, 198, 764
LmnI	GCTCC	1 cut(s)	914
Lsp1109I	GCAGC	4 cut(s)	26, 95, 371, 587
LweI	GCATC	1 cut(s)	605
MaeI	CTAG	4 cut(s)	41, 395, 723, 1057
MaeII	ACGT	1 cut(s)	791
MaeIII	GTNAC	2 cut(s)	442, 928
MalI	GATC	3 cut(s)	181, 200, 766
MbiI	CCGCTC	1 cut(s)	190
MboI	GATC	3 cut(s)	179, 198, 764
MboII	GAAGA	4 cut(s)	143, 217, 868, 985
MhlI	GDGCHC	2 cut(s)	55, 627
MluCI	AATT	5 cut(s)	261, 321, 369, 526, 924
MlyI	GAGTC	1 cut(s)	439
MnlI	CCTC	5 cut(s)	204, 490, 533, 849, 961
MseI	TTAA	7 cut(s)	65, 260, 279, 701, 716, 728, 801
MslI	CAYNNNNRTG	2 cut(s)	104, 308
MspA1I	CMGCKG	1 cut(s)	1021
MspCI	CTTAAG	1 cut(s)	700
MspR9I	CCNGG	1 cut(s)	776
Mva1269I	GAATGC	1 cut(s)	549
MvaI	CCWGG	1 cut(s)	776
MwoI	GCNNNNNNNGC	3 cut(s)	11, 50, 140
NdeII	GATC	3 cut(s)	179, 198, 764
NheI	GCTAGC	1 cut(s)	40
NlaIII	CATG	4 cut(s)	91, 103, 109, 582
NlaIV	GGNNCC	3 cut(s)	459, 460, 1026
NmuCI	GTSAC	2 cut(s)	442, 928
NspI	RCATGY	1 cut(s)	109
PctI	GAATGC	1 cut(s)	549
PkrI	GCNGC	7 cut(s)	16, 85, 142, 192, 386, 574, 577
PleI	GAGTC	1 cut(s)	439
PpsI	GAGTC	1 cut(s)	439
Ppu21I	YACGTR	1 cut(s)	792
PpuMI	RGGWCCY	1 cut(s)	458
Psp124BI	GAGCTC	1 cut(s)	627
Psp5II	RGGWCCY	1 cut(s)	458
Psp6I	CCWGG	1 cut(s)	774
PspFI	CCCAGC	5 cut(s)	59, 232, 272, 616, 995
PspGI	CCWGG	1 cut(s)	774
PspN4I	GGNNCC	3 cut(s)	459, 460, 1026
PspPI	GGNCC	3 cut(s)	458, 711, 812
PspPPI	RGGWCCY	1 cut(s)	458
PstI	CTGCAG	1 cut(s)	389
PstNI	CAGNNNCTG	1 cut(s)	995
RsaI	GTAC	3 cut(s)	342, 391, 603
RsaNI	GTAC	3 cut(s)	341, 390, 602
RseI	CAYNNNNRTG	2 cut(s)	104, 308
SacI	GAGCTC	1 cut(s)	627
SaqAI	TTAA	7 cut(s)	65, 260, 279, 701, 716, 728, 801
SatI	GCNGC	7 cut(s)	15, 84, 141, 191, 385, 573, 576
Sau3AI	GATC	3 cut(s)	179, 198, 764
Sau96I	GGNCC	3 cut(s)	458, 711, 812
ScaI	AGTACT	1 cut(s)	603
SchI	GAGTC	1 cut(s)	439
ScrFI	CCNGG	1 cut(s)	776
SduI	GDGCHC	2 cut(s)	55, 627
SfaNI	GCATC	1 cut(s)	605
SfcI	CTRYAG	3 cut(s)	283, 385, 669
SinI	GGWCC	1 cut(s)	458
SmiMI	CAYNNNNRTG	2 cut(s)	104, 308
SmlI	CTYRAG	1 cut(s)	700
SmoI	CTYRAG	1 cut(s)	700
Sse9I	AATT	5 cut(s)	261, 321, 369, 526, 924
SsiI	CCGC	4 cut(s)	141, 190, 573, 1021
SspMI	CTAG	4 cut(s)	41, 395, 723, 1057
SstI	GAGCTC	1 cut(s)	627
StyD4I	CCNGG	1 cut(s)	774
StyI	CCWWGG	2 cut(s)	405, 898
TaaI	ACNGT	1 cut(s)	522
TaiI	ACGT	1 cut(s)	794
TaqI	TCGA	1 cut(s)	524
TasI	AATT	5 cut(s)	261, 321, 369, 526, 924
TatI	WGTACW	2 cut(s)	340, 601
TauI	GCSGC	3 cut(s)	143, 193, 575
Tru1I	TTAA	7 cut(s)	65, 260, 279, 701, 716, 728, 801
Tru9I	TTAA	7 cut(s)	65, 260, 279, 701, 716, 728, 801
TscAI	CASTG	1 cut(s)	937
TseFI	GTSAC	2 cut(s)	442, 928
TseI	GCWGC	4 cut(s)	14, 83, 384, 575
Tsp45I	GTSAC	2 cut(s)	442, 928
TspDTI	ATGAA	4 cut(s)	116, 427, 992, 999
TspRI	CASTG	1 cut(s)	937
Vha464I	CTTAAG	1 cut(s)	700
VpaK11BI	GGWCC	1 cut(s)	458
XbaI	TCTAGA	1 cut(s)	722
XceI	RCATGY	1 cut(s)	109
XcmI	CCANNNNNNNNNTGG	1 cut(s)	525
XmiI	GTMKAC	1 cut(s)	92
XspI	CTAG	4 cut(s)	41, 395, 723, 1057
ZrmI	AGTACT	1 cut(s)	603

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.