Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1B

Orthogroup ID

OG0001686

Physical Location & Seq

Genomic Coordinates Forward (+)

27385683 .. 27386682

Gene Structure 1000 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1BG171600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 429 bp

ATGGAAAAAATTGATCAGAGAAGCTGCAGTACCCTAGCTAAAACCTTGGGAACAATAGTTTCAATATCAGGGGCTTTCATTGTGACTCTTTACAAGGGACCCCCACTTCTGATGACAGCCTCAGTTGATTTATTGTCTCACAATCAACTTTTCTTGCCACAGTCAAATTGGGTCATTGGAGGAATGCTCCTTGGGTTTTATTGTGTCGTGGCTGCAGCATTTCTTATCGTACAGGTTATTTCAGCATCATACTTTGCACTTTCTGAATGCTGCAGTTTGATAGGAGCAATTGTAATTGTCATTGGATTTTACTCTGTCATATGGGGCAAAGCCAATGAGGAGAAGATGGATGATGATGTAGGGGCAAGGAGTCTGGCATCAAAGAAACAACGGATTCCATTACTGCAAAACATTATTGAAGAAATCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0005887 GO:0005938 GO:0006810 GO:0007154 GO:0007165 GO:0008150 GO:0009719 GO:0009725 GO:0009733 GO:0009734 GO:0009755 GO:0009987 GO:0010033 GO:0016020 GO:0016021 GO:0022857 GO:0023052 GO:0031224 GO:0031226 GO:0032870 GO:0042221 GO:0044424 GO:0044425 GO:0044444 GO:0044459 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0051716 GO:0055085 GO:0065007 GO:0070887 GO:0071310 GO:0071365 GO:0071495 GO:0071944 GO:0099568

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EamA

Protein Analysis

142

Amino Acids

15.4

Weight (kDa)

5.73

Isoelectric Point (pI)

42.06

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0001686)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g34870 FvH4_4g34870 FvH4_4g34870 FvH4_4g34870 FvH4_4g34870 FvH4_4g34870 FvH4_4g34870 FvH4_4g34870
malus_domestica	MD13G1088500.v1.1 MD13G1088700.v1.1 MD16G1088800.v1.1 MD16G1088900.v1.1
prunus_persica	Prupe.1G257200_v2.0.a1 Prupe.1G257300_v2.0.a1 Prupe.1G257400_v2.0.a1 Prupe.1G257500_v2.0.a1 Prupe.1G257600_v2.0.a1 Prupe.1G257700_v2.0.a1
pyrus_communis	pycom13g07640 pycom13g07650 pycom16g07610
rosa_chinensis	RchiOBHm_Chr4g0411271 RchiOBHm_Chr4g0444271 RchiOBHm_Chr4g0444291 RchiOBHm_Chr4g0444301
rosa_laevigata	RLG00000005843
rosa_multiflora	Rmu_sc0002841.1_g000015
rosa_roxburghii	Rroxscaffold_5G00384840 Rroxscaffold_5G00384850
rosa_rugosa	Rorug03G0072000 Rorug03G0072100 Rorug04G0351100 Rorug04G0351200 Rorug04G0351300 Rorug04G0351300 Rorug04G0351300 Rorug04G0351300 Rorug07G0109600
rosa_samantha	Rh1BG171600 Rh4AG412000 Rh4BG070500 Rh4BG423500 Rh4CG078800 Rh4DG418700 Rh4DG418800
rosa_wichuraiana	Rw2G039380 Rw4G013770 Rw4G035390 Rw5G040980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AfaI	GTAC	2 cut(s)	31, 231
AgsI	TTSAA	2 cut(s)	63, 419
AluBI	AGCT	2 cut(s)	24, 38
AluI	AGCT	2 cut(s)	24, 38
Alw26I	GTCTC	1 cut(s)	141
ApeKI	GCWGC	4 cut(s)	24, 212, 215, 270
AspS9I	GGNCC	1 cut(s)	98
AvaII	GGWCC	1 cut(s)	98
BarI	GAAGNNNNNNTAC	2 cut(s)	13, 45
BbvI	GCAGC	4 cut(s)	11, 199, 227, 257
BccI	CCATC	1 cut(s)	340
BclI	TGATCA	1 cut(s)	13
BcoDI	GTCTC	1 cut(s)	141
BfaI	CTAG	2 cut(s)	35, 427
BfmI	CTRYAG	3 cut(s)	25, 213, 271
BisI	GCNGC	4 cut(s)	25, 213, 216, 271
BlsI	GCNGC	4 cut(s)	26, 214, 217, 272
Bme18I	GGWCC	1 cut(s)	98
BmgT120I	GGNCC	1 cut(s)	98
BmiI	GGNNCC	2 cut(s)	99, 100
BmsI	GCATC	2 cut(s)	254, 386
BplI	GAGNNNNNCTC	2 cut(s)	171, 203
BsaJI	CCNNGG	2 cut(s)	45, 190
BsaXI	ACNNNNNCTCC	2 cut(s)	276, 306
BseDI	CCNNGG	2 cut(s)	45, 190
BseGI	GGATG	1 cut(s)	355
BseMII	CTCAG	1 cut(s)	135
BseRI	GAGGAG	1 cut(s)	353
BseXI	GCAGC	4 cut(s)	11, 199, 227, 257
BslFI	GGGAC	1 cut(s)	111
BsmAI	GTCTC	1 cut(s)	141
BsmFI	GGGAC	1 cut(s)	111
BsmI	GAATGC	2 cut(s)	189, 272
Bsp143I	GATC	1 cut(s)	13
BspCNI	CTCAG	1 cut(s)	134
BspLI	GGNNCC	2 cut(s)	99, 100
BspMAI	CTGCAG	3 cut(s)	29, 217, 275
BssECI	CCNNGG	2 cut(s)	45, 190
BssMI	GATC	1 cut(s)	13
BssT1I	CCWWGG	2 cut(s)	45, 190
Bst4CI	ACNGT	1 cut(s)	162
BstDEI	CTNAG	1 cut(s)	121
BstF5I	GGATG	1 cut(s)	355
BstKTI	GATC	1 cut(s)	16
BstMAI	GTCTC	1 cut(s)	141
BstMBI	GATC	1 cut(s)	13
BstSFI	CTRYAG	3 cut(s)	25, 213, 271
BstV1I	GCAGC	4 cut(s)	11, 199, 227, 257
BtsCI	GGATG	1 cut(s)	355
Cfr13I	GGNCC	1 cut(s)	98
Csp6I	GTAC	2 cut(s)	30, 230
CviJI	RGCY	6 cut(s)	24, 38, 74, 119, 212, 332
CviKI_1	RGCY	6 cut(s)	24, 38, 74, 119, 212, 332
CviQI	GTAC	2 cut(s)	30, 230
DdeI	CTNAG	1 cut(s)	121
DpnI	GATC	1 cut(s)	15
DpnII	GATC	1 cut(s)	13
Eco130I	CCWWGG	2 cut(s)	45, 190
Eco47I	GGWCC	1 cut(s)	98
EcoO109I	RGGNCCY	1 cut(s)	98
EcoT14I	CCWWGG	2 cut(s)	45, 190
ErhI	CCWWGG	2 cut(s)	45, 190
FaiI	YATR	3 cut(s)	250, 320, 322
FaqI	GGGAC	1 cut(s)	111
FauNDI	CATATG	1 cut(s)	320
FbaI	TGATCA	1 cut(s)	13
Fnu4HI	GCNGC	4 cut(s)	25, 213, 216, 271
FokI	GGATG	1 cut(s)	362
Fsp4HI	GCNGC	4 cut(s)	25, 213, 216, 271
FspBI	CTAG	2 cut(s)	35, 427
GluI	GCNGC	4 cut(s)	25, 213, 216, 271
HinfI	GANTC	3 cut(s)	85, 370, 394
Hpy188I	TCNGA	3 cut(s)	18, 111, 265
HpyCH4III	ACNGT	1 cut(s)	162
HpyCH4V	TGCA	5 cut(s)	27, 215, 257, 273, 406
HpyF3I	CTNAG	1 cut(s)	121
KflI	GGGWCCC	1 cut(s)	98
Ksp22I	TGATCA	1 cut(s)	13
Kzo9I	GATC	1 cut(s)	13
LmnI	GCTCC	2 cut(s)	192, 284
LpnPI	CCDG	3 cut(s)	54, 218, 359
Lsp1109I	GCAGC	4 cut(s)	11, 199, 227, 257
LweI	GCATC	2 cut(s)	254, 386
MaeI	CTAG	2 cut(s)	35, 427
MaeIII	GTNAC	1 cut(s)	82
MalI	GATC	1 cut(s)	15
MboI	GATC	1 cut(s)	13
MboII	GAAGA	1 cut(s)	355
MfeI	CAATTG	1 cut(s)	288
MluCI	AATT	4 cut(s)	9, 166, 288, 294
MlyI	GAGTC	2 cut(s)	79, 379
MnlI	CCTC	3 cut(s)	130, 173, 331
MunI	CAATTG	1 cut(s)	288
Mva1269I	GAATGC	2 cut(s)	189, 272
NdeI	CATATG	1 cut(s)	320
NdeII	GATC	1 cut(s)	13
NlaIV	GGNNCC	2 cut(s)	99, 100
NmuCI	GTSAC	1 cut(s)	82
PctI	GAATGC	2 cut(s)	189, 272
PfeI	GAWTC	1 cut(s)	394
PkrI	GCNGC	4 cut(s)	26, 214, 217, 272
PleI	GAGTC	2 cut(s)	79, 378
PpsI	GAGTC	2 cut(s)	79, 378
PpuMI	RGGWCCY	1 cut(s)	98
Psp5II	RGGWCCY	1 cut(s)	98
PspN4I	GGNNCC	2 cut(s)	99, 100
PspPI	GGNCC	1 cut(s)	98
PspPPI	RGGWCCY	1 cut(s)	98
PstI	CTGCAG	3 cut(s)	29, 217, 275
RsaI	GTAC	2 cut(s)	31, 231
RsaNI	GTAC	2 cut(s)	30, 230
SatI	GCNGC	4 cut(s)	25, 213, 216, 271
Sau3AI	GATC	1 cut(s)	13
Sau96I	GGNCC	1 cut(s)	98
SchI	GAGTC	2 cut(s)	79, 379
SetI	ASST	4 cut(s)	26, 40, 47, 237
SfaNI	GCATC	2 cut(s)	254, 386
SfcI	CTRYAG	3 cut(s)	25, 213, 271
SinI	GGWCC	1 cut(s)	98
Sse9I	AATT	4 cut(s)	9, 166, 288, 294
SspMI	CTAG	2 cut(s)	35, 427
StyI	CCWWGG	2 cut(s)	45, 190
TaaI	ACNGT	1 cut(s)	162
TasI	AATT	4 cut(s)	9, 166, 288, 294
TfiI	GAWTC	1 cut(s)	394
TseFI	GTSAC	1 cut(s)	82
TseI	GCWGC	4 cut(s)	24, 212, 215, 270
Tsp45I	GTSAC	1 cut(s)	82
TspDTI	ATGAA	1 cut(s)	67
TspGWI	ACGGA	1 cut(s)	406
VpaK11BI	GGWCC	1 cut(s)	98
XcmI	CCANNNNNNNNNTGG	1 cut(s)	165
XspI	CTAG	2 cut(s)	35, 427

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.