Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001686

Physical Location & Seq

Genomic Coordinates Forward (+)

65096180 .. 65098127

Gene Structure 1948 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ41199

Sequence Viewer

CDS Protein Promoter (2k)

Length: 771 bp

ATGGTCGTGTACGCCAACGCTCTCTGTACCCTCCTCCTTCTCCCTGATGCCTTGTTCATCTTCCACAGATGTTCAGGGCAGATATTTGGATATATTGGTATAGACTACAGCTCTCCCACGCTTGGTACCGCCATGCTTAACCTCATTCCTGCATTCACTTTCATACTTGCTCTTATTTTCAGGATGGAAAATGTGTACTGGAGAAGGTTAAATAGTCGAGCCAAAGTTTTGGGGACCATCGTTTCAATTACAGGAGCATTTGTGGTCACATTCTACAAAGGTCCACCGATCATATTGCTAAGTGCACCTGATGAATTTCATTTCTCACCACCACAACATTCAAATTGGATTCTTGGAGGCCTTTTTTTGGCAGCTGATTCTTTCACCAGTTCCCTATGGTACATTCTGCAGGGAATTGTTTCAACTGTTATCCGATACATTTTGATGATCAGCTGGTGCGTGTGGAAGGCTGGAGCTTTTTATTGCTCTATGTTCAAGCCTCTTGGGATCATTTTTGGCGTGATCATGGGTGTCATCTTTTTGGGAGATCCATTCTATTTTGGAAGTTTGGTTGGTGCAGTTATAATTGTCACTGGATTTTATGGAGTGATGTGGGGAAAAGCCGAAGAAGAGAAGCTGGTGGAAAATGGTGGCCGGAAAAGTGAATCATTAGGCCAAAATAAGGTTCCTCTGCTACTATTGAGGAAAGGAATACCATATGATTTGGAGTCTTCGTTATTGGGATCTTCTGTATCATCACAAGTTAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0005887 GO:0005938 GO:0007154 GO:0007165 GO:0008150 GO:0009719 GO:0009725 GO:0009733 GO:0009734 GO:0009755 GO:0009987 GO:0010033 GO:0016020 GO:0016021 GO:0023052 GO:0031224 GO:0031226 GO:0032870 GO:0042221 GO:0044424 GO:0044425 GO:0044444 GO:0044459 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0070887 GO:0071310 GO:0071365 GO:0071495 GO:0071944 GO:0099568

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EamA

Protein Analysis

256

Amino Acids

28.25

Weight (kDa)

8.63

Isoelectric Point (pI)

36.26

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001686)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g34870 FvH4_4g34870 FvH4_4g34870 FvH4_4g34870 FvH4_4g34870 FvH4_4g34870 FvH4_4g34870 FvH4_4g34870
malus_domestica	MD13G1088500.v1.1 MD13G1088700.v1.1 MD16G1088800.v1.1 MD16G1088900.v1.1
prunus_persica	Prupe.1G257200_v2.0.a1 Prupe.1G257300_v2.0.a1 Prupe.1G257400_v2.0.a1 Prupe.1G257500_v2.0.a1 Prupe.1G257600_v2.0.a1 Prupe.1G257700_v2.0.a1
pyrus_communis	pycom13g07640 pycom13g07650 pycom16g07610
rosa_chinensis	RchiOBHm_Chr4g0411271 RchiOBHm_Chr4g0444271 RchiOBHm_Chr4g0444291 RchiOBHm_Chr4g0444301
rosa_laevigata	RLG00000005843
rosa_multiflora	Rmu_sc0002841.1_g000015
rosa_roxburghii	Rroxscaffold_5G00384840 Rroxscaffold_5G00384850
rosa_rugosa	Rorug03G0072000 Rorug03G0072100 Rorug04G0351100 Rorug04G0351200 Rorug04G0351300 Rorug04G0351300 Rorug04G0351300 Rorug04G0351300 Rorug07G0109600
rosa_samantha	Rh1BG171600 Rh4AG412000 Rh4BG070500 Rh4BG423500 Rh4CG078800 Rh4DG418700 Rh4DG418800
rosa_wichuraiana	Rw2G039380 Rw4G013770 Rw4G035390 Rw5G040980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	584
Acc65I	GGTACC	1 cut(s)	125
AccB1I	GGYRCC	1 cut(s)	125
AciI	CCGC	1 cut(s)	129
AclWI	GGATC	3 cut(s)	515, 542, 751
AcoI	YGGCCR	1 cut(s)	652
AcsI	RAATTY	1 cut(s)	314
AfaI	GTAC	5 cut(s)	11, 28, 127, 197, 401
AfiI	CCNNNNNNNGG	3 cut(s)	122, 367, 682
AgsI	TTSAA	4 cut(s)	246, 342, 423, 496
AjuI	GAANNNNNNNTTGG	2 cut(s)	669, 701
AluBI	AGCT	5 cut(s)	111, 374, 453, 476, 637
AluI	AGCT	5 cut(s)	111, 374, 453, 476, 637
Alw21I	GWGCWC	1 cut(s)	307
Alw44I	GTGCAC	1 cut(s)	303
AlwI	GGATC	3 cut(s)	515, 542, 751
AoxI	GGCC	3 cut(s)	358, 652, 673
ApaLI	GTGCAC	1 cut(s)	303
ApeKI	GCWGC	1 cut(s)	371
ApoI	RAATTY	1 cut(s)	314
Asp700I	GAANNNNTTC	1 cut(s)	418
Asp718I	GGTACC	1 cut(s)	125
AspS9I	GGNCC	2 cut(s)	234, 281
AsuHPI	GGTGA	2 cut(s)	318, 376
AvaII	GGWCC	2 cut(s)	234, 281
BaeGI	GKGCMC	1 cut(s)	307
BanI	GGYRCC	1 cut(s)	125
BbsI	GAAGAC	1 cut(s)	723
Bbv12I	GWGCWC	1 cut(s)	307
BbvI	GCAGC	1 cut(s)	383
BccI	CCATC	2 cut(s)	178, 245
BcgI	CGANNNNNNTGC	2 cut(s)	277, 311
BclI	TGATCA	2 cut(s)	447, 522
BfmI	CTRYAG	2 cut(s)	106, 407
BisI	GCNGC	1 cut(s)	372
BlsI	GCNGC	1 cut(s)	373
Bme18I	GGWCC	2 cut(s)	234, 281
BmgT120I	GGNCC	2 cut(s)	234, 281
BmiI	GGNNCC	3 cut(s)	127, 235, 687
BmsI	GCATC	1 cut(s)	37
BpiI	GAAGAC	1 cut(s)	723
BpmI	CTGGAG	2 cut(s)	220, 492
BsaXI	ACNNNNNCTCC	4 cut(s)	246, 276, 719, 749
Bsc4I	CCNNNNNNNGG	3 cut(s)	122, 367, 682
Bse1I	ACTGG	3 cut(s)	203, 387, 598
BseGI	GGATG	1 cut(s)	189
BseLI	CCNNNNNNNGG	3 cut(s)	122, 367, 682
BseNI	ACTGG	3 cut(s)	203, 387, 598
BseRI	GAGGAG	1 cut(s)	23
BseSI	GKGCMC	1 cut(s)	307
BseXI	GCAGC	1 cut(s)	383
BsgI	GTGCAG	1 cut(s)	597
BshFI	GGCC	3 cut(s)	360, 654, 675
BshNI	GGYRCC	1 cut(s)	125
BsiHKAI	GWGCWC	1 cut(s)	307
BsiSI	CCGG	1 cut(s)	655
BslFI	GGGAC	1 cut(s)	247
BslI	CCNNNNNNNGG	3 cut(s)	122, 367, 682
BsmFI	GGGAC	1 cut(s)	247
BsmI	GAATGC	1 cut(s)	152
BsnI	GGCC	3 cut(s)	360, 654, 675
Bsp1286I	GDGCHC	1 cut(s)	307
Bsp143I	GATC	6 cut(s)	288, 447, 507, 522, 547, 743
BspACI	CCGC	1 cut(s)	129
BspANI	GGCC	3 cut(s)	360, 654, 675
BspLI	GGNNCC	3 cut(s)	127, 235, 687
BspMAI	CTGCAG	1 cut(s)	411
BspPI	GGATC	3 cut(s)	515, 542, 751
BspT107I	GGYRCC	1 cut(s)	125
BsrI	ACTGG	3 cut(s)	203, 387, 598
BssMI	GATC	6 cut(s)	288, 447, 507, 522, 547, 743
Bst4CI	ACNGT	1 cut(s)	427
Bst6I	CTCTTC	1 cut(s)	624
BstDEI	CTNAG	1 cut(s)	299
BstF5I	GGATG	1 cut(s)	189
BstKTI	GATC	6 cut(s)	291, 450, 510, 525, 550, 746
BstMBI	GATC	6 cut(s)	288, 447, 507, 522, 547, 743
BstSFI	CTRYAG	2 cut(s)	106, 407
BstSLI	GKGCMC	1 cut(s)	307
BstV1I	GCAGC	1 cut(s)	383
BstV2I	GAAGAC	1 cut(s)	723
BstX2I	RGATCY	2 cut(s)	547, 743
BstXI	CCANNNNNNTGG	1 cut(s)	229
BstYI	RGATCY	2 cut(s)	547, 743
BsuRI	GGCC	3 cut(s)	360, 654, 675
BtsCI	GGATG	1 cut(s)	189
BtsIMutI	CAGTG	1 cut(s)	591
Cfr13I	GGNCC	2 cut(s)	234, 281
Csp6I	GTAC	5 cut(s)	10, 27, 126, 196, 400
CviAII	CATG	2 cut(s)	133, 526
CviQI	GTAC	5 cut(s)	10, 27, 126, 196, 400
DdeI	CTNAG	1 cut(s)	299
DpnI	GATC	6 cut(s)	290, 449, 509, 524, 549, 745
DpnII	GATC	6 cut(s)	288, 447, 507, 522, 547, 743
EaeI	YGGCCR	1 cut(s)	652
Eam1104I	CTCTTC	1 cut(s)	624
EarI	CTCTTC	1 cut(s)	624
Eco147I	AGGCCT	1 cut(s)	360
Eco47I	GGWCC	2 cut(s)	234, 281
FaeI	CATG	2 cut(s)	136, 529
FaqI	GGGAC	1 cut(s)	247
FatI	CATG	2 cut(s)	132, 525
FauNDI	CATATG	1 cut(s)	718
FbaI	TGATCA	2 cut(s)	447, 522
Fnu4HI	GCNGC	1 cut(s)	372
FokI	GGATG	1 cut(s)	196
Fsp4HI	GCNGC	1 cut(s)	372
GluI	GCNGC	1 cut(s)	372
GsuI	CTGGAG	2 cut(s)	220, 492
HaeIII	GGCC	3 cut(s)	360, 654, 675
HapII	CCGG	1 cut(s)	655
Hin1II	CATG	2 cut(s)	136, 529
HinfI	GANTC	4 cut(s)	349, 377, 665, 728
HpaII	CCGG	1 cut(s)	655
HphI	GGTGA	2 cut(s)	318, 376
Hpy166II	GTNNAC	4 cut(s)	10, 196, 284, 305
Hpy188I	TCNGA	1 cut(s)	434
Hpy188III	TCNNGA	1 cut(s)	181
Hpy8I	GTNNAC	4 cut(s)	10, 196, 284, 305
HpyAV	CCTTC	3 cut(s)	47, 198, 460
HpyCH4III	ACNGT	1 cut(s)	427
HpyCH4V	TGCA	4 cut(s)	152, 305, 409, 578
HpyF3I	CTNAG	1 cut(s)	299
Hsp92II	CATG	2 cut(s)	136, 529
KpnI	GGTACC	1 cut(s)	129
Ksp22I	TGATCA	2 cut(s)	447, 522
Kzo9I	GATC	6 cut(s)	288, 447, 507, 522, 547, 743
LmnI	GCTCC	2 cut(s)	254, 473
Lsp1109I	GCAGC	1 cut(s)	383
LweI	GCATC	1 cut(s)	37
MaeIII	GTNAC	2 cut(s)	265, 589
MalI	GATC	6 cut(s)	290, 449, 509, 524, 549, 745
MboI	GATC	6 cut(s)	288, 447, 507, 522, 547, 743
MboII	GAAGA	5 cut(s)	52, 638, 641, 723, 738
MflI	RGATCY	2 cut(s)	547, 743
MhlI	GDGCHC	1 cut(s)	307
MluCI	AATT	6 cut(s)	246, 314, 343, 414, 585, 766
MlyI	GAGTC	1 cut(s)	737
MnlI	CCTC	7 cut(s)	41, 44, 152, 350, 510, 696, 699
MroXI	GAANNNNTTC	1 cut(s)	418
MseI	TTAA	4 cut(s)	138, 209, 765, 769
MslI	CAYNNNNRTG	1 cut(s)	443
MspA1I	CMGCKG	2 cut(s)	374, 453
MspI	CCGG	1 cut(s)	655
Mva1269I	GAATGC	1 cut(s)	152
NdeI	CATATG	1 cut(s)	718
NdeII	GATC	6 cut(s)	288, 447, 507, 522, 547, 743
NlaIII	CATG	2 cut(s)	136, 529
NlaIV	GGNNCC	3 cut(s)	127, 235, 687
NmuCI	GTSAC	2 cut(s)	265, 589
PacI	TTAATTAA	1 cut(s)	769
PceI	AGGCCT	1 cut(s)	360
PctI	GAATGC	1 cut(s)	152
PdmI	GAANNNNTTC	1 cut(s)	418
PfeI	GAWTC	3 cut(s)	349, 377, 665
PkrI	GCNGC	1 cut(s)	373
PleI	GAGTC	1 cut(s)	736
PpsI	GAGTC	1 cut(s)	736
PsiI	TTATAA	1 cut(s)	584
PspN4I	GGNNCC	3 cut(s)	127, 235, 687
PspPI	GGNCC	2 cut(s)	234, 281
PstI	CTGCAG	1 cut(s)	411
PsuI	RGATCY	2 cut(s)	547, 743
PvuII	CAGCTG	2 cut(s)	374, 453
RsaI	GTAC	5 cut(s)	11, 28, 127, 197, 401
RsaNI	GTAC	5 cut(s)	10, 27, 126, 196, 400
RseI	CAYNNNNRTG	1 cut(s)	443
SaqAI	TTAA	4 cut(s)	138, 209, 765, 769
SatI	GCNGC	1 cut(s)	372
Sau3AI	GATC	6 cut(s)	288, 447, 507, 522, 547, 743
Sau96I	GGNCC	2 cut(s)	234, 281
SchI	GAGTC	1 cut(s)	737
SduI	GDGCHC	1 cut(s)	307
SfaNI	GCATC	1 cut(s)	37
SfcI	CTRYAG	2 cut(s)	106, 407
SinI	GGWCC	2 cut(s)	234, 281
SmiMI	CAYNNNNRTG	1 cut(s)	443
Sse9I	AATT	6 cut(s)	246, 314, 343, 414, 585, 766
SseBI	AGGCCT	1 cut(s)	360
SsiI	CCGC	1 cut(s)	129
StuI	AGGCCT	1 cut(s)	360
TaaI	ACNGT	1 cut(s)	427
TaqI	TCGA	1 cut(s)	217
TasI	AATT	6 cut(s)	246, 314, 343, 414, 585, 766
TatI	WGTACW	1 cut(s)	195
TfiI	GAWTC	3 cut(s)	349, 377, 665
Tru1I	TTAA	4 cut(s)	138, 209, 765, 769
Tru9I	TTAA	4 cut(s)	138, 209, 765, 769
TscAI	CASTG	1 cut(s)	598
TseFI	GTSAC	2 cut(s)	265, 589
TseI	GCWGC	1 cut(s)	371
Tsp45I	GTSAC	2 cut(s)	265, 589
TspDTI	ATGAA	4 cut(s)	46, 151, 308, 327
TspRI	CASTG	1 cut(s)	598
VneI	GTGCAC	1 cut(s)	303
VpaK11BI	GGWCC	2 cut(s)	234, 281
XapI	RAATTY	1 cut(s)	314
XmnI	GAANNNNTTC	1 cut(s)	418

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.