Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr13

Orthogroup ID

OG0001686

Physical Location & Seq

Genomic Coordinates Reverse (-)

6200075 .. 6201309

Gene Structure 1235 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD13G1088700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 708 bp

ATGTCAATCGGAGGAGCATTTGTTGTAACATTTTACAAAGGTCTACCGATCATACGGCTATCTGCATCACTTCCTAATTCACTCTATCAAATCTTTTCCTCATCAAGATCAAACTGGATCCTCGGAGGGCTTTTTCTTGCAGTTCACGCCTTCTCAATTTCTTTATGGTACATTCTGCAGGCAACGGTCGTTAAGAAGTACCCCGCAATTTTGCTATCAGTCTTTTTCCAATGCTTATTCGCAACCATTCAGTCTGCAATATTTGCTTTAATTGCAGTTAGAGATGCAAGTGCCTGGGAAATAAGGCTGGATGTGGGGTTGATTGCTGTTTTATACACTGGAATTGTTGCGACGGTTCTTTATTTCAGTGTAATTGTCTGGTGTGTAGAAAAGGTTGGAGCTTTTTATTGTTCTATGTTTAAGCCTCTTGGCATAATTTTTGGTGTGATCATGGGTGCCATATTTTTGGGAGATTCATTCTACCTTGGAAGTTTGGTTGGTGCAGCCATAATCGTTACTGGATTTTATGCCATGATGTGGGGGAAGGCCACAGAAGAGAAGCTGATCGAAATAGAATCACTGCACCAAAATAAGCTCCCTTTGCTACAAAACGGGATACAAGACAAGAGAAGCAGAAGTATTGGTGCACAACTGTCCTATGTAAACACACATCTCAACTCCTGGTTCACAGGGTTATCTCCACCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0005887 GO:0005938 GO:0007154 GO:0007165 GO:0008150 GO:0009719 GO:0009725 GO:0009733 GO:0009734 GO:0009755 GO:0009987 GO:0010033 GO:0016020 GO:0016021 GO:0023052 GO:0031224 GO:0031226 GO:0032870 GO:0042221 GO:0044424 GO:0044425 GO:0044444 GO:0044459 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0070887 GO:0071310 GO:0071365 GO:0071495 GO:0071944 GO:0099568

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EamA

Protein Analysis

236

Amino Acids

25.84

Weight (kDa)

9.13

Isoelectric Point (pI)

43.59

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EamA	PF00892	42 - 178	4.9e-11	EamA-like transporter family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001686)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g34870 FvH4_4g34870 FvH4_4g34870 FvH4_4g34870 FvH4_4g34870 FvH4_4g34870 FvH4_4g34870 FvH4_4g34870
malus_domestica	MD13G1088500.v1.1 MD13G1088700.v1.1 MD16G1088800.v1.1 MD16G1088900.v1.1
prunus_persica	Prupe.1G257200_v2.0.a1 Prupe.1G257300_v2.0.a1 Prupe.1G257400_v2.0.a1 Prupe.1G257500_v2.0.a1 Prupe.1G257600_v2.0.a1 Prupe.1G257700_v2.0.a1
pyrus_communis	pycom13g07640 pycom13g07650 pycom16g07610
rosa_chinensis	RchiOBHm_Chr4g0411271 RchiOBHm_Chr4g0444271 RchiOBHm_Chr4g0444291 RchiOBHm_Chr4g0444301
rosa_laevigata	RLG00000005843
rosa_multiflora	Rmu_sc0002841.1_g000015
rosa_roxburghii	Rroxscaffold_5G00384840 Rroxscaffold_5G00384850
rosa_rugosa	Rorug03G0072000 Rorug03G0072100 Rorug04G0351100 Rorug04G0351200 Rorug04G0351300 Rorug04G0351300 Rorug04G0351300 Rorug04G0351300 Rorug07G0109600
rosa_samantha	Rh1BG171600 Rh4AG412000 Rh4BG070500 Rh4BG423500 Rh4CG078800 Rh4DG418700 Rh4DG418800
rosa_wichuraiana	Rw2G039380 Rw4G013770 Rw4G035390 Rw5G040980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	455
AccB7I	CCANNNNNTGG	1 cut(s)	537
AccI	GTMKAC	1 cut(s)	43
AciI	CCGC	1 cut(s)	204
AclWI	GGATC	2 cut(s)	112, 125
AfaI	GTAC	2 cut(s)	170, 200
AfiI	CCNNNNNNNGG	1 cut(s)	537
AjnI	CCWGG	2 cut(s)	293, 680
AluBI	AGCT	3 cut(s)	401, 562, 595
AluI	AGCT	3 cut(s)	401, 562, 595
Alw21I	GWGCWC	1 cut(s)	649
Alw44I	GTGCAC	1 cut(s)	645
AlwI	GGATC	2 cut(s)	112, 125
AoxI	GGCC	1 cut(s)	546
ApaLI	GTGCAC	1 cut(s)	645
ApeKI	GCWGC	1 cut(s)	503
BaeGI	GKGCMC	1 cut(s)	649
BamHI	GGATCC	1 cut(s)	117
BanI	GGYRCC	1 cut(s)	455
Bbv12I	GWGCWC	1 cut(s)	649
BbvI	GCAGC	1 cut(s)	515
BceAI	ACGGC	1 cut(s)	71
BciT130I	CCWGG	2 cut(s)	295, 682
BciVI	GTATCC	1 cut(s)	609
BclI	TGATCA	1 cut(s)	447
BfmI	CTRYAG	1 cut(s)	176
BfuI	GTATCC	1 cut(s)	609
BisI	GCNGC	1 cut(s)	504
BlsI	GCNGC	1 cut(s)	505
Bme1390I	CCNGG	2 cut(s)	295, 682
BmiI	GGNNCC	2 cut(s)	119, 457
BmrFI	CCNGG	2 cut(s)	295, 682
BmsI	GCATC	2 cut(s)	74, 274
BsaJI	CCNNGG	3 cut(s)	121, 294, 484
BsaXI	ACNNNNNCTCC	2 cut(s)	6, 36
Bsc4I	CCNNNNNNNGG	1 cut(s)	537
Bse1I	ACTGG	3 cut(s)	119, 343, 523
BseBI	CCWGG	2 cut(s)	295, 682
BseDI	CCNNGG	3 cut(s)	121, 294, 484
BseGI	GGATG	1 cut(s)	316
BseLI	CCNNNNNNNGG	1 cut(s)	537
BseNI	ACTGG	3 cut(s)	119, 343, 523
BseRI	GAGGAG	1 cut(s)	27
BseSI	GKGCMC	1 cut(s)	649
BseXI	GCAGC	1 cut(s)	515
BsgI	GTGCAG	2 cut(s)	522, 566
Bsh1285I	CGRYCG	1 cut(s)	189
BshFI	GGCC	1 cut(s)	548
BshNI	GGYRCC	1 cut(s)	455
BsiEI	CGRYCG	1 cut(s)	189
BsiHKAI	GWGCWC	1 cut(s)	649
BslI	CCNNNNNNNGG	1 cut(s)	537
BsnI	GGCC	1 cut(s)	548
Bsp1286I	GDGCHC	1 cut(s)	649
Bsp143I	GATC	5 cut(s)	48, 107, 117, 447, 564
BspACI	CCGC	1 cut(s)	204
BspANI	GGCC	1 cut(s)	548
BspLI	GGNNCC	2 cut(s)	119, 457
BspMAI	CTGCAG	1 cut(s)	180
BspPI	GGATC	2 cut(s)	112, 125
BspT107I	GGYRCC	1 cut(s)	455
BsrI	ACTGG	3 cut(s)	119, 343, 523
BssECI	CCNNGG	3 cut(s)	121, 294, 484
BssMI	GATC	5 cut(s)	48, 107, 117, 447, 564
BssT1I	CCWWGG	1 cut(s)	484
Bst2UI	CCWGG	2 cut(s)	295, 682
Bst4CI	ACNGT	3 cut(s)	187, 355, 654
Bst6I	CTCTTC	1 cut(s)	549
BstAPI	GCANNNNNTGC	1 cut(s)	263
BstC8I	GCNNGC	1 cut(s)	180
BstF5I	GGATG	1 cut(s)	316
BstKTI	GATC	5 cut(s)	51, 110, 120, 450, 567
BstMBI	GATC	5 cut(s)	48, 107, 117, 447, 564
BstMCI	CGRYCG	1 cut(s)	189
BstMWI	GCNNNNNNNGC	4 cut(s)	146, 263, 272, 601
BstNI	CCWGG	2 cut(s)	295, 682
BstSCI	CCNGG	2 cut(s)	293, 680
BstSFI	CTRYAG	1 cut(s)	176
BstSLI	GKGCMC	1 cut(s)	649
BstV1I	GCAGC	1 cut(s)	515
BstX2I	RGATCY	1 cut(s)	117
BstXI	CCANNNNNNTGG	1 cut(s)	466
BstYI	RGATCY	1 cut(s)	117
BsuI	GTATCC	1 cut(s)	609
BsuRI	GGCC	1 cut(s)	548
BtsCI	GGATG	1 cut(s)	316
BtsI	GCAGTG	1 cut(s)	578
BtsIMutI	CAGTG	3 cut(s)	336, 373, 578
Cac8I	GCNNGC	1 cut(s)	180
Csp6I	GTAC	2 cut(s)	169, 199
CviAII	CATG	2 cut(s)	451, 532
CviJI	RGCY	9 cut(s)	58, 130, 307, 401, 424, 506, 548, 562, 595
CviKI_1	RGCY	9 cut(s)	58, 130, 307, 401, 424, 506, 548, 562, 595
CviQI	GTAC	2 cut(s)	169, 199
DpnI	GATC	5 cut(s)	50, 109, 119, 449, 566
DpnII	GATC	5 cut(s)	48, 107, 117, 447, 564
Eam1104I	CTCTTC	1 cut(s)	549
EarI	CTCTTC	1 cut(s)	549
Eco130I	CCWWGG	1 cut(s)	484
EcoRII	CCWGG	2 cut(s)	293, 680
EcoT14I	CCWWGG	1 cut(s)	484
ErhI	CCWWGG	1 cut(s)	484
FaeI	CATG	2 cut(s)	454, 535
FatI	CATG	2 cut(s)	450, 531
FauI	CCCGC	1 cut(s)	211
FbaI	TGATCA	1 cut(s)	447
FblI	GTMKAC	1 cut(s)	43
Fnu4HI	GCNGC	1 cut(s)	504
FokI	GGATG	1 cut(s)	323
Fsp4HI	GCNGC	1 cut(s)	504
GluI	GCNGC	1 cut(s)	504
HaeIII	GGCC	1 cut(s)	548
Hin1II	CATG	2 cut(s)	454, 535
HinfI	GANTC	2 cut(s)	473, 575
Hpy166II	GTNNAC	5 cut(s)	44, 145, 647, 664, 687
Hpy188I	TCNGA	2 cut(s)	11, 125
Hpy188III	TCNNGA	1 cut(s)	105
Hpy8I	GTNNAC	5 cut(s)	44, 145, 647, 664, 687
Hpy99I	CGWCG	1 cut(s)	355
HpyAV	CCTTC	2 cut(s)	160, 538
HpyCH4III	ACNGT	3 cut(s)	187, 355, 654
HpyCH4V	TGCA	9 cut(s)	65, 140, 178, 257, 275, 287, 503, 583, 647
HpyF10VI	GCNNNNNNNGC	4 cut(s)	146, 263, 272, 601
Hsp92II	CATG	2 cut(s)	454, 535
Ksp22I	TGATCA	1 cut(s)	447
Kzo9I	GATC	5 cut(s)	48, 107, 117, 447, 564
LmnI	GCTCC	3 cut(s)	14, 398, 600
Lsp1109I	GCAGC	1 cut(s)	515
LweI	GCATC	2 cut(s)	74, 274
MaeIII	GTNAC	2 cut(s)	25, 514
MalI	GATC	5 cut(s)	50, 109, 119, 449, 566
MboI	GATC	5 cut(s)	48, 107, 117, 447, 564
MboII	GAAGA	1 cut(s)	566
MflI	RGATCY	1 cut(s)	117
MhlI	GDGCHC	1 cut(s)	649
MluCI	AATT	7 cut(s)	76, 156, 207, 270, 342, 372, 435
MmeI	TCCRAC	1 cut(s)	376
MnlI	CCTC	5 cut(s)	5, 109, 119, 131, 435
MseI	TTAA	4 cut(s)	192, 269, 420, 706
MspR9I	CCNGG	2 cut(s)	295, 682
MvaI	CCWGG	2 cut(s)	295, 682
MwoI	GCNNNNNNNGC	4 cut(s)	146, 263, 272, 601
NdeII	GATC	5 cut(s)	48, 107, 117, 447, 564
NlaIII	CATG	2 cut(s)	454, 535
NlaIV	GGNNCC	2 cut(s)	119, 457
PfeI	GAWTC	2 cut(s)	473, 575
PflMI	CCANNNNNTGG	1 cut(s)	537
PkrI	GCNGC	1 cut(s)	505
Psp6I	CCWGG	2 cut(s)	293, 680
PspGI	CCWGG	2 cut(s)	293, 680
PspN4I	GGNNCC	2 cut(s)	119, 457
PstI	CTGCAG	1 cut(s)	180
PsuI	RGATCY	1 cut(s)	117
RsaI	GTAC	2 cut(s)	170, 200
RsaNI	GTAC	2 cut(s)	169, 199
SaqAI	TTAA	4 cut(s)	192, 269, 420, 706
SatI	GCNGC	1 cut(s)	504
Sau3AI	GATC	5 cut(s)	48, 107, 117, 447, 564
ScrFI	CCNGG	2 cut(s)	295, 682
SduI	GDGCHC	1 cut(s)	649
SetI	ASST	7 cut(s)	43, 396, 403, 486, 564, 597, 706
SfaNI	GCATC	2 cut(s)	74, 274
SfcI	CTRYAG	1 cut(s)	176
Sse9I	AATT	7 cut(s)	76, 156, 207, 270, 342, 372, 435
SsiI	CCGC	1 cut(s)	204
SspI	AATATT	1 cut(s)	261
StyD4I	CCNGG	2 cut(s)	293, 680
StyI	CCWWGG	1 cut(s)	484
TaaI	ACNGT	3 cut(s)	187, 355, 654
TaqI	TCGA	1 cut(s)	567
TasI	AATT	7 cut(s)	76, 156, 207, 270, 342, 372, 435
TfiI	GAWTC	2 cut(s)	473, 575
Tru1I	TTAA	4 cut(s)	192, 269, 420, 706
Tru9I	TTAA	4 cut(s)	192, 269, 420, 706
TscAI	CASTG	3 cut(s)	343, 373, 585
TseI	GCWGC	1 cut(s)	503
TspDTI	ATGAA	1 cut(s)	465
TspRI	CASTG	3 cut(s)	343, 373, 585
Van91I	CCANNNNNTGG	1 cut(s)	537
VneI	GTGCAC	1 cut(s)	645
XmiI	GTMKAC	1 cut(s)	43

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.