Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001686

Physical Location & Seq

Genomic Coordinates Reverse (-)

35035191 .. 35037596

Gene Structure 2406 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ38209

Sequence Viewer

CDS Protein Promoter (2k)

Length: 753 bp

ATGGCAGCAAGTGTCACAAAGTTGATTCCTTTCTTTGTTTTTGTGCTCTTGGCAGATCAACAGACCGGCCTCCGATCACTTTATCTATTCTCTGTTGGTTCTTCTTGCTTGGTCTACTTGGGTCAGTTGATATTTTCGTTTGTGATGAAATCCCATGTTGGACATTCAATCAAAGATTGTAGCTTTGGGTTCTCCTACTCTTGGCACGGCTATGTCAACCTTATTCCAGCTTTCACTTTTGTACTTGCAGTTATATTCAGAATGGAAAAAATTGATCGGAGAAGCTGCAGTACCCTAGCTAAAACCTTGGGAACAATAGTTTCAATATCAGGGGCTTTCATTGTGACTCTTTACAAGGGACCCCCACAACTGATGACAGCCTCAGTTGATTTATTGTCTCACAATAAACTTTTCTTGCCACAGTCGAATTGGGTCATTGGAGGAATGCTCCTTGGGTTTTATTGTGTGGTGGCTGCAGCATTTCTTATCGTACAGGTGAAATCTGTAAAAGTTGATACCCTCACGAAACTGTCGAAAGACTCAAGTGCTTGGGCCTTAAACCCTAAGTTAAGGTTGTTTGCGGTTTTATACTCAGGAGTTTTTGGCTCAGCATTCCAGGTTGGACTTTTTAGTCTTGTTCCGCTTCGCAAGGTTATGGTTATGGATTACAAACTTACATACCCCAATGGGACTGCCACAACAATGTTGATCAATAGCTTTCACACTAAAAGTGGTGCAGAGCTTTCCGGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0005887 GO:0005938 GO:0006810 GO:0007154 GO:0007165 GO:0008150 GO:0009719 GO:0009725 GO:0009733 GO:0009734 GO:0009755 GO:0009987 GO:0010033 GO:0016020 GO:0016021 GO:0022857 GO:0023052 GO:0031224 GO:0031226 GO:0032870 GO:0042221 GO:0044424 GO:0044425 GO:0044444 GO:0044459 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0051716 GO:0055085 GO:0065007 GO:0070887 GO:0071310 GO:0071365 GO:0071495 GO:0071944 GO:0099568

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EamA

Protein Analysis

250

Amino Acids

27.39

Weight (kDa)

9.67

Isoelectric Point (pI)

22.64

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
OPT	PF03169	207 - 247	8.8e-09	OPT oligopeptide transporter protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0001686)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g34870 FvH4_4g34870 FvH4_4g34870 FvH4_4g34870 FvH4_4g34870 FvH4_4g34870 FvH4_4g34870 FvH4_4g34870
malus_domestica	MD13G1088500.v1.1 MD13G1088700.v1.1 MD16G1088800.v1.1 MD16G1088900.v1.1
prunus_persica	Prupe.1G257200_v2.0.a1 Prupe.1G257300_v2.0.a1 Prupe.1G257400_v2.0.a1 Prupe.1G257500_v2.0.a1 Prupe.1G257600_v2.0.a1 Prupe.1G257700_v2.0.a1
pyrus_communis	pycom13g07640 pycom13g07650 pycom16g07610
rosa_chinensis	RchiOBHm_Chr4g0411271 RchiOBHm_Chr4g0444271 RchiOBHm_Chr4g0444291 RchiOBHm_Chr4g0444301
rosa_laevigata	RLG00000005843
rosa_multiflora	Rmu_sc0002841.1_g000015
rosa_roxburghii	Rroxscaffold_5G00384840 Rroxscaffold_5G00384850
rosa_rugosa	Rorug03G0072000 Rorug03G0072100 Rorug04G0351100 Rorug04G0351200 Rorug04G0351300 Rorug04G0351300 Rorug04G0351300 Rorug04G0351300 Rorug07G0109600
rosa_samantha	Rh1BG171600 Rh4AG412000 Rh4BG070500 Rh4BG423500 Rh4CG078800 Rh4DG418700 Rh4DG418800
rosa_wichuraiana	Rw2G039380 Rw4G013770 Rw4G035390 Rw5G040980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	630
AccI	GTMKAC	1 cut(s)	114
AciI	CCGC	2 cut(s)	581, 641
AfaI	GTAC	3 cut(s)	243, 292, 492
AfiI	CCNNNNNNNGG	1 cut(s)	201
AgsI	TTSAA	2 cut(s)	168, 324
AjnI	CCWGG	1 cut(s)	615
AluBI	AGCT	6 cut(s)	183, 230, 285, 299, 717, 742
AluI	AGCT	6 cut(s)	183, 230, 285, 299, 717, 742
Alw21I	GWGCWC	1 cut(s)	48
Alw26I	GTCTC	1 cut(s)	402
AoxI	GGCC	2 cut(s)	67, 552
ApeKI	GCWGC	4 cut(s)	5, 285, 473, 476
AspS9I	GGNCC	2 cut(s)	359, 552
AsuC2I	CCSGG	1 cut(s)	748
AsuHPI	GGTGA	1 cut(s)	508
AvaII	GGWCC	1 cut(s)	359
BarI	GAAGNNNNNNTAC	2 cut(s)	274, 306
Bbv12I	GWGCWC	1 cut(s)	48
BbvI	GCAGC	4 cut(s)	17, 272, 460, 488
BceAI	ACGGC	1 cut(s)	223
BciT130I	CCWGG	1 cut(s)	617
BclI	TGATCA	1 cut(s)	708
BcnI	CCSGG	1 cut(s)	748
BcoDI	GTCTC	1 cut(s)	402
BfaI	CTAG	1 cut(s)	296
BfmI	CTRYAG	2 cut(s)	286, 474
BisI	GCNGC	4 cut(s)	6, 286, 474, 477
BlpI	GCTNAGC	1 cut(s)	607
BlsI	GCNGC	4 cut(s)	7, 287, 475, 478
Bme1390I	CCNGG	2 cut(s)	617, 748
Bme18I	GGWCC	1 cut(s)	359
BmgT120I	GGNCC	2 cut(s)	359, 552
BmiI	GGNNCC	2 cut(s)	360, 361
BmrFI	CCNGG	2 cut(s)	617, 748
BplI	GAGNNNNNCTC	2 cut(s)	432, 464
Bpu1102I	GCTNAGC	1 cut(s)	607
BpuEI	CTTGAG	1 cut(s)	526
BpuMI	CCSGG	1 cut(s)	748
BsaJI	CCNNGG	2 cut(s)	306, 451
Bsc4I	CCNNNNNNNGG	1 cut(s)	201
Bse118I	RCCGGY	1 cut(s)	65
BseBI	CCWGG	1 cut(s)	617
BseDI	CCNNGG	2 cut(s)	306, 451
BseLI	CCNNNNNNNGG	1 cut(s)	201
BseMII	CTCAG	3 cut(s)	396, 606, 621
BseXI	GCAGC	4 cut(s)	17, 272, 460, 488
BshFI	GGCC	2 cut(s)	69, 554
BsiHKAI	GWGCWC	1 cut(s)	48
BsiSI	CCGG	2 cut(s)	66, 747
BslFI	GGGAC	2 cut(s)	372, 703
BslI	CCNNNNNNNGG	1 cut(s)	201
BsmAI	GTCTC	1 cut(s)	402
BsmFI	GGGAC	2 cut(s)	372, 703
BsmI	GAATGC	2 cut(s)	450, 611
BsnI	GGCC	2 cut(s)	69, 554
Bsp1286I	GDGCHC	1 cut(s)	48
Bsp143I	GATC	4 cut(s)	55, 74, 274, 708
Bsp1720I	GCTNAGC	1 cut(s)	607
BspACI	CCGC	2 cut(s)	581, 641
BspANI	GGCC	2 cut(s)	69, 554
BspCNI	CTCAG	3 cut(s)	395, 605, 620
BspLI	GGNNCC	2 cut(s)	360, 361
BspMAI	CTGCAG	2 cut(s)	290, 478
BsrFI	RCCGGY	1 cut(s)	65
BssAI	RCCGGY	1 cut(s)	65
BssECI	CCNNGG	2 cut(s)	306, 451
BssMI	GATC	4 cut(s)	55, 74, 274, 708
BssT1I	CCWWGG	2 cut(s)	306, 451
Bst2UI	CCWGG	1 cut(s)	617
Bst4CI	ACNGT	2 cut(s)	423, 531
BstDEI	CTNAG	4 cut(s)	382, 564, 592, 607
BstKTI	GATC	4 cut(s)	58, 77, 277, 711
BstMAI	GTCTC	1 cut(s)	402
BstMBI	GATC	4 cut(s)	55, 74, 274, 708
BstNI	CCWGG	1 cut(s)	617
BstSCI	CCNGG	2 cut(s)	615, 746
BstSFI	CTRYAG	2 cut(s)	286, 474
BstV1I	GCAGC	4 cut(s)	17, 272, 460, 488
BsuRI	GGCC	2 cut(s)	69, 554
Cfr10I	RCCGGY	1 cut(s)	65
Cfr13I	GGNCC	2 cut(s)	359, 552
Csp6I	GTAC	3 cut(s)	242, 291, 491
CviAII	CATG	1 cut(s)	155
CviQI	GTAC	3 cut(s)	242, 291, 491
DdeI	CTNAG	4 cut(s)	382, 564, 592, 607
DpnI	GATC	4 cut(s)	57, 76, 276, 710
DpnII	GATC	4 cut(s)	55, 74, 274, 708
DrdI	GACNNNNNNGTC	1 cut(s)	630
DseDI	GACNNNNNNGTC	1 cut(s)	630
Eco130I	CCWWGG	2 cut(s)	306, 451
Eco47I	GGWCC	1 cut(s)	359
EcoO109I	RGGNCCY	1 cut(s)	359
EcoRII	CCWGG	1 cut(s)	615
EcoT14I	CCWWGG	2 cut(s)	306, 451
ErhI	CCWWGG	2 cut(s)	306, 451
FaeI	CATG	1 cut(s)	158
FaiI	YATR	7 cut(s)	156, 213, 254, 589, 656, 662, 679
FaqI	GGGAC	2 cut(s)	372, 703
FatI	CATG	1 cut(s)	154
FbaI	TGATCA	1 cut(s)	708
FblI	GTMKAC	1 cut(s)	114
Fnu4HI	GCNGC	4 cut(s)	6, 286, 474, 477
Fsp4HI	GCNGC	4 cut(s)	6, 286, 474, 477
FspBI	CTAG	1 cut(s)	296
GluI	GCNGC	4 cut(s)	6, 286, 474, 477
HaeIII	GGCC	2 cut(s)	69, 554
HapII	CCGG	2 cut(s)	66, 747
Hin1II	CATG	1 cut(s)	158
HincII	GTYRAC	1 cut(s)	217
HindII	GTYRAC	1 cut(s)	217
HinfI	GANTC	3 cut(s)	25, 346, 539
HpaII	CCGG	2 cut(s)	66, 747
HphI	GGTGA	1 cut(s)	508
Hpy166II	GTNNAC	2 cut(s)	115, 217
Hpy188I	TCNGA	3 cut(s)	74, 260, 279
Hpy188III	TCNNGA	2 cut(s)	523, 594
Hpy8I	GTNNAC	2 cut(s)	115, 217
HpyCH4III	ACNGT	2 cut(s)	423, 531
HpyCH4V	TGCA	4 cut(s)	248, 288, 476, 737
HpyF3I	CTNAG	4 cut(s)	382, 564, 592, 607
Hsp92II	CATG	1 cut(s)	158
KflI	GGGWCCC	1 cut(s)	359
Ksp22I	TGATCA	1 cut(s)	708
Kzo9I	GATC	4 cut(s)	55, 74, 274, 708
LmnI	GCTCC	1 cut(s)	453
LpnPI	CCDG	7 cut(s)	79, 240, 315, 479, 579, 602, 629
Lsp1109I	GCAGC	4 cut(s)	17, 272, 460, 488
MaeI	CTAG	1 cut(s)	296
MaeIII	GTNAC	2 cut(s)	13, 343
MalI	GATC	4 cut(s)	57, 76, 276, 710
MboI	GATC	4 cut(s)	55, 74, 274, 708
MboII	GAAGA	1 cut(s)	93
MhlI	GDGCHC	1 cut(s)	48
MluCI	AATT	2 cut(s)	270, 427
MlyI	GAGTC	2 cut(s)	340, 533
MmeI	TCCRAC	2 cut(s)	139, 601
MnlI	CCTC	4 cut(s)	80, 391, 434, 530
MseI	TTAA	2 cut(s)	557, 569
MslI	CAYNNNNRTG	2 cut(s)	210, 701
MspI	CCGG	2 cut(s)	66, 747
MspR9I	CCNGG	2 cut(s)	617, 748
Mva1269I	GAATGC	2 cut(s)	450, 611
MvaI	CCWGG	1 cut(s)	617
NciI	CCSGG	1 cut(s)	748
NdeII	GATC	4 cut(s)	55, 74, 274, 708
NlaIII	CATG	1 cut(s)	158
NlaIV	GGNNCC	2 cut(s)	360, 361
NmuCI	GTSAC	2 cut(s)	13, 343
PcsI	WCGNNNNNNNCGW	1 cut(s)	530
PctI	GAATGC	2 cut(s)	450, 611
PfeI	GAWTC	1 cut(s)	25
PkrI	GCNGC	4 cut(s)	7, 287, 475, 478
PleI	GAGTC	2 cut(s)	340, 533
PpsI	GAGTC	2 cut(s)	340, 533
PpuMI	RGGWCCY	1 cut(s)	359
Psp5II	RGGWCCY	1 cut(s)	359
Psp6I	CCWGG	1 cut(s)	615
PspGI	CCWGG	1 cut(s)	615
PspN4I	GGNNCC	2 cut(s)	360, 361
PspPI	GGNCC	2 cut(s)	359, 552
PspPPI	RGGWCCY	1 cut(s)	359
PstI	CTGCAG	2 cut(s)	290, 478
RsaI	GTAC	3 cut(s)	243, 292, 492
RsaNI	GTAC	3 cut(s)	242, 291, 491
RseI	CAYNNNNRTG	2 cut(s)	210, 701
SaqAI	TTAA	2 cut(s)	557, 569
SatI	GCNGC	4 cut(s)	6, 286, 474, 477
Sau3AI	GATC	4 cut(s)	55, 74, 274, 708
Sau96I	GGNCC	2 cut(s)	359, 552
SchI	GAGTC	2 cut(s)	340, 533
ScrFI	CCNGG	2 cut(s)	617, 748
SduI	GDGCHC	1 cut(s)	48
SfcI	CTRYAG	2 cut(s)	286, 474
SinI	GGWCC	1 cut(s)	359
SmiMI	CAYNNNNRTG	2 cut(s)	210, 701
SmlI	CTYRAG	1 cut(s)	541
SmoI	CTYRAG	1 cut(s)	541
Sse9I	AATT	2 cut(s)	270, 427
SsiI	CCGC	2 cut(s)	581, 641
SspMI	CTAG	1 cut(s)	296
StyD4I	CCNGG	2 cut(s)	615, 746
StyI	CCWWGG	2 cut(s)	306, 451
TaaI	ACNGT	2 cut(s)	423, 531
TaqI	TCGA	2 cut(s)	425, 533
TasI	AATT	2 cut(s)	270, 427
TatI	WGTACW	1 cut(s)	241
TfiI	GAWTC	1 cut(s)	25
Tru1I	TTAA	2 cut(s)	557, 569
Tru9I	TTAA	2 cut(s)	557, 569
TseFI	GTSAC	2 cut(s)	13, 343
TseI	GCWGC	4 cut(s)	5, 285, 473, 476
Tsp45I	GTSAC	2 cut(s)	13, 343
TspDTI	ATGAA	2 cut(s)	161, 328
VpaK11BI	GGWCC	1 cut(s)	359
XcmI	CCANNNNNNNNNTGG	1 cut(s)	426
XmiI	GTMKAC	1 cut(s)	114
XspI	CTAG	1 cut(s)	296

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.