Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0001686

Physical Location & Seq

Genomic Coordinates Forward (+)

8526592 .. 8527005

Gene Structure 414 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0109600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 414 bp

ATGTCAATGCAAGATGTGAAAATAAACGGTTACAACATTAGAACCAATACACAAGTCATAGTGAATGCCTGGCAGATCGGGAGAGATCCCAAGTCGTACGATTACAAACCAGAGGAGTTCGAGCCAGAAAGGTTCGTGACTGTTAACAGTGGTATAAGTTATAAAGGGAATAACTTGGAATTGATTCCGTTTGGTGCTGACAGAAGATTGTGTCCTGAGATTCAGTTTGCTTTGGCTGTGGATGAGATTGTTCTAGCAAATTTATTGCACAAGTTTGATTGGACATTGCCTAATGGAGTAAGAAGCAAGGATTTAGACATGAAAGAATCAGCTGGTCTAACAATTCATAAGAAATTAATACCCGTTGCCATATCATATTTATCAGCTTATTCACTTCGGATTCGTGTATATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0005887 GO:0005938 GO:0006810 GO:0007154 GO:0007165 GO:0008150 GO:0009719 GO:0009725 GO:0009733 GO:0009734 GO:0009755 GO:0009987 GO:0010033 GO:0016020 GO:0016021 GO:0022857 GO:0023052 GO:0031224 GO:0031226 GO:0032870 GO:0042221 GO:0044424 GO:0044425 GO:0044444 GO:0044459 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0051716 GO:0055085 GO:0065007 GO:0070887 GO:0071310 GO:0071365 GO:0071495 GO:0071944 GO:0099568

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EamA

Protein Analysis

137

Amino Acids

15.69

Weight (kDa)

7.82

Isoelectric Point (pI)

33.56

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
p450	PF00067	3 - 118	2.1e-23	Cytochrome P450

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0001686)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g34870 FvH4_4g34870 FvH4_4g34870 FvH4_4g34870 FvH4_4g34870 FvH4_4g34870 FvH4_4g34870 FvH4_4g34870
malus_domestica	MD13G1088500.v1.1 MD13G1088700.v1.1 MD16G1088800.v1.1 MD16G1088900.v1.1
prunus_persica	Prupe.1G257200_v2.0.a1 Prupe.1G257300_v2.0.a1 Prupe.1G257400_v2.0.a1 Prupe.1G257500_v2.0.a1 Prupe.1G257600_v2.0.a1 Prupe.1G257700_v2.0.a1
pyrus_communis	pycom13g07640 pycom13g07650 pycom16g07610
rosa_chinensis	RchiOBHm_Chr4g0411271 RchiOBHm_Chr4g0444271 RchiOBHm_Chr4g0444291 RchiOBHm_Chr4g0444301
rosa_laevigata	RLG00000005843
rosa_multiflora	Rmu_sc0002841.1_g000015
rosa_roxburghii	Rroxscaffold_5G00384840 Rroxscaffold_5G00384850
rosa_rugosa	Rorug03G0072000 Rorug03G0072100 Rorug04G0351100 Rorug04G0351200 Rorug04G0351300 Rorug04G0351300 Rorug04G0351300 Rorug04G0351300 Rorug07G0109600
rosa_samantha	Rh1BG171600 Rh4AG412000 Rh4BG070500 Rh4BG423500 Rh4CG078800 Rh4DG418700 Rh4DG418800
rosa_wichuraiana	Rw2G039380 Rw4G013770 Rw4G035390 Rw5G040980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	162
AclWI	GGATC	1 cut(s)	80
AcsI	RAATTY	1 cut(s)	259
AfaI	GTAC	1 cut(s)	98
AjnI	CCWGG	1 cut(s)	68
AluBI	AGCT	2 cut(s)	332, 386
AluI	AGCT	2 cut(s)	332, 386
AlwI	GGATC	1 cut(s)	80
ApoI	RAATTY	1 cut(s)	259
AseI	ATTAAT	1 cut(s)	356
Asp700I	GAANNNNTTC	1 cut(s)	183
BciT130I	CCWGG	1 cut(s)	70
BfaI	CTAG	1 cut(s)	254
Bme1390I	CCNGG	1 cut(s)	70
BmrFI	CCNGG	1 cut(s)	70
Bse3DI	GCAATG	1 cut(s)	284
BseBI	CCWGG	1 cut(s)	70
BseGI	GGATG	1 cut(s)	247
BseMI	GCAATG	1 cut(s)	284
BseMII	CTCAG	1 cut(s)	207
BseRI	GAGGAG	1 cut(s)	128
BsiWI	CGTACG	1 cut(s)	96
BsmI	GAATGC	1 cut(s)	70
Bsp143I	GATC	2 cut(s)	75, 85
BspCNI	CTCAG	1 cut(s)	208
BspPI	GGATC	1 cut(s)	80
BsrDI	GCAATG	1 cut(s)	284
BssMI	GATC	2 cut(s)	75, 85
Bst2UI	CCWGG	1 cut(s)	70
Bst4CI	ACNGT	3 cut(s)	29, 142, 149
BstDEI	CTNAG	1 cut(s)	216
BstF5I	GGATG	1 cut(s)	247
BstKTI	GATC	2 cut(s)	78, 88
BstMBI	GATC	2 cut(s)	75, 85
BstNI	CCWGG	1 cut(s)	70
BstSCI	CCNGG	1 cut(s)	68
BstX2I	RGATCY	1 cut(s)	85
BstYI	RGATCY	1 cut(s)	85
BtsCI	GGATG	1 cut(s)	247
BtsIMutI	CAGTG	1 cut(s)	154
Csp6I	GTAC	1 cut(s)	97
CviAII	CATG	1 cut(s)	319
CviJI	RGCY	4 cut(s)	124, 236, 332, 386
CviKI_1	RGCY	4 cut(s)	124, 236, 332, 386
CviQI	GTAC	1 cut(s)	97
DdeI	CTNAG	1 cut(s)	216
DpnI	GATC	2 cut(s)	77, 87
DpnII	GATC	2 cut(s)	75, 85
EcoRII	CCWGG	1 cut(s)	68
FaeI	CATG	1 cut(s)	322
FaiI	YATR	8 cut(s)	59, 155, 162, 320, 348, 371, 376, 409
FatI	CATG	1 cut(s)	318
FokI	GGATG	1 cut(s)	254
FspBI	CTAG	1 cut(s)	254
Hin1II	CATG	1 cut(s)	322
HincII	GTYRAC	1 cut(s)	145
HindII	GTYRAC	1 cut(s)	145
HinfI	GANTC	4 cut(s)	184, 220, 326, 400
HpaI	GTTAAC	1 cut(s)	145
Hpy166II	GTNNAC	1 cut(s)	145
Hpy188I	TCNGA	1 cut(s)	399
Hpy188III	TCNNGA	3 cut(s)	79, 136, 215
Hpy8I	GTNNAC	1 cut(s)	145
HpyCH4III	ACNGT	3 cut(s)	29, 142, 149
HpyCH4V	TGCA	2 cut(s)	10, 268
HpyF3I	CTNAG	1 cut(s)	216
Hsp92II	CATG	1 cut(s)	322
KspAI	GTTAAC	1 cut(s)	145
Kzo9I	GATC	2 cut(s)	75, 85
LpnPI	CCDG	6 cut(s)	55, 82, 123, 138, 228, 318
MaeI	CTAG	1 cut(s)	254
MaeIII	GTNAC	2 cut(s)	29, 136
MalI	GATC	2 cut(s)	77, 87
MboI	GATC	2 cut(s)	75, 85
MboII	GAAGA	1 cut(s)	216
MflI	RGATCY	1 cut(s)	85
MluCI	AATT	4 cut(s)	179, 259, 342, 353
MnlI	CCTC	1 cut(s)	106
MroXI	GAANNNNTTC	1 cut(s)	183
MseI	TTAA	3 cut(s)	144, 356, 412
MspA1I	CMGCKG	1 cut(s)	332
MspR9I	CCNGG	1 cut(s)	70
Mva1269I	GAATGC	1 cut(s)	70
MvaI	CCWGG	1 cut(s)	70
NdeII	GATC	2 cut(s)	75, 85
NlaIII	CATG	1 cut(s)	322
NmuCI	GTSAC	1 cut(s)	136
PctI	GAATGC	1 cut(s)	70
PdmI	GAANNNNTTC	1 cut(s)	183
PfeI	GAWTC	4 cut(s)	184, 220, 326, 400
Pfl23II	CGTACG	1 cut(s)	96
PshBI	ATTAAT	1 cut(s)	356
PsiI	TTATAA	1 cut(s)	162
Psp6I	CCWGG	1 cut(s)	68
PspGI	CCWGG	1 cut(s)	68
PspLI	CGTACG	1 cut(s)	96
PsuI	RGATCY	1 cut(s)	85
PvuII	CAGCTG	1 cut(s)	332
RsaI	GTAC	1 cut(s)	98
RsaNI	GTAC	1 cut(s)	97
SaqAI	TTAA	3 cut(s)	144, 356, 412
Sau3AI	GATC	2 cut(s)	75, 85
ScrFI	CCNGG	1 cut(s)	70
SetI	ASST	3 cut(s)	134, 334, 388
Sse9I	AATT	4 cut(s)	179, 259, 342, 353
SspMI	CTAG	1 cut(s)	254
StyD4I	CCNGG	1 cut(s)	68
TaaI	ACNGT	3 cut(s)	29, 142, 149
TaqI	TCGA	1 cut(s)	120
TasI	AATT	4 cut(s)	179, 259, 342, 353
TfiI	GAWTC	4 cut(s)	184, 220, 326, 400
Tru1I	TTAA	3 cut(s)	144, 356, 412
Tru9I	TTAA	3 cut(s)	144, 356, 412
TscAI	CASTG	1 cut(s)	154
TseFI	GTSAC	1 cut(s)	136
Tsp45I	GTSAC	1 cut(s)	136
TspDTI	ATGAA	2 cut(s)	335, 335
TspGWI	ACGGA	1 cut(s)	177
TspRI	CASTG	1 cut(s)	154
VspI	ATTAAT	1 cut(s)	356
XapI	RAATTY	1 cut(s)	259
XmnI	GAANNNNTTC	1 cut(s)	183
XspI	CTAG	1 cut(s)	254

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.