Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4D

Orthogroup ID

OG0001686

Physical Location & Seq

Genomic Coordinates Forward (+)

62753344 .. 62756773

Gene Structure 3430 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4DG418800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 549 bp

ATGGAAAAAATTGATGGGAGAAGCTGCAGTACCCTAGCTAAAACCTTGGGAACAATAGTTTCAATATCAGGGGCTTTCATTGTGACTCTTTACAGGGGACCCCCACTTCTGATGACAGCCTCAGTTGATTTATTGTCTCACAATCAACTTTTCTTGCCACAGTCGAATTGGGTCATTGGAGGAATGCTCCTTGGGTTTCATTGTGTGGTGGCTGCAGCATTTCTTATCATACAGGCTTCAGTATTAAAAAAATACCCAGCAGAGCTCATTATAGTCTTTTACTATTGCTTCTTTGTGGCTATTCAATCTGTAGTGGTGTTGTGGTTTGTGGAAAGAGACTTAAGTGCTTGGGCCTTAAACCCTAAGTTAAGGTTGTTTGCGGTTCTATACTCAGGAGTTTTTGGCTCAGCGTTCCAGGTTGGTGTATCTACATGGTGTCTTAACAGGACAGGGCCAGTTTTTGTATCTATGTTCAAGCCTTTAGGGATTGTAGTTGCAGTTGCCATTGGTGTTATCTTCTTGGGGGATACTTTCTACCTTGGAAGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0005887 GO:0005938 GO:0006810 GO:0007154 GO:0007165 GO:0008150 GO:0009719 GO:0009725 GO:0009733 GO:0009734 GO:0009755 GO:0009987 GO:0010033 GO:0016020 GO:0016021 GO:0022857 GO:0023052 GO:0031224 GO:0031226 GO:0032870 GO:0042221 GO:0044424 GO:0044425 GO:0044444 GO:0044459 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0051716 GO:0055085 GO:0065007 GO:0070887 GO:0071310 GO:0071365 GO:0071495 GO:0071944 GO:0099568

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EamA

Protein Analysis

182

Amino Acids

19.91

Weight (kDa)

9.18

Isoelectric Point (pI)

20.68

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EamA	PF00892	61 - 179	1.8e-07	EamA-like transporter family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0001686)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g34870 FvH4_4g34870 FvH4_4g34870 FvH4_4g34870 FvH4_4g34870 FvH4_4g34870 FvH4_4g34870 FvH4_4g34870
malus_domestica	MD13G1088500.v1.1 MD13G1088700.v1.1 MD16G1088800.v1.1 MD16G1088900.v1.1
prunus_persica	Prupe.1G257200_v2.0.a1 Prupe.1G257300_v2.0.a1 Prupe.1G257400_v2.0.a1 Prupe.1G257500_v2.0.a1 Prupe.1G257600_v2.0.a1 Prupe.1G257700_v2.0.a1
pyrus_communis	pycom13g07640 pycom13g07650 pycom16g07610
rosa_chinensis	RchiOBHm_Chr4g0411271 RchiOBHm_Chr4g0444271 RchiOBHm_Chr4g0444291 RchiOBHm_Chr4g0444301
rosa_laevigata	RLG00000005843
rosa_multiflora	Rmu_sc0002841.1_g000015
rosa_roxburghii	Rroxscaffold_5G00384840 Rroxscaffold_5G00384850
rosa_rugosa	Rorug03G0072000 Rorug03G0072100 Rorug04G0351100 Rorug04G0351200 Rorug04G0351300 Rorug04G0351300 Rorug04G0351300 Rorug04G0351300 Rorug07G0109600
rosa_samantha	Rh1BG171600 Rh4AG412000 Rh4BG070500 Rh4BG423500 Rh4CG078800 Rh4DG418700 Rh4DG418800
rosa_wichuraiana	Rw2G039380 Rw4G013770 Rw4G035390 Rw5G040980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	380
AcuI	CTGAAG	1 cut(s)	222
AfaI	GTAC	1 cut(s)	31
AflII	CTTAAG	1 cut(s)	340
AgsI	TTSAA	3 cut(s)	63, 305, 475
AjnI	CCWGG	1 cut(s)	414
AluBI	AGCT	3 cut(s)	24, 38, 265
AluI	AGCT	3 cut(s)	24, 38, 265
Alw21I	GWGCWC	1 cut(s)	267
Alw26I	GTCTC	2 cut(s)	141, 330
AoxI	GGCC	2 cut(s)	351, 452
ApeKI	GCWGC	3 cut(s)	24, 212, 215
AspS9I	GGNCC	3 cut(s)	98, 351, 452
AvaII	GGWCC	1 cut(s)	98
BanII	GRGCYC	1 cut(s)	267
BarI	GAAGNNNNNNTAC	2 cut(s)	13, 45
Bbv12I	GWGCWC	1 cut(s)	267
BbvI	GCAGC	3 cut(s)	11, 199, 227
BccI	CCATC	1 cut(s)	8
BciT130I	CCWGG	1 cut(s)	416
BciVI	GTATCC	1 cut(s)	520
BcoDI	GTCTC	2 cut(s)	141, 330
BfaI	CTAG	1 cut(s)	35
BfmI	CTRYAG	3 cut(s)	25, 213, 309
BfrI	CTTAAG	1 cut(s)	340
BfuI	GTATCC	1 cut(s)	520
BisI	GCNGC	3 cut(s)	25, 213, 216
BlpI	GCTNAGC	1 cut(s)	406
BlsI	GCNGC	3 cut(s)	26, 214, 217
Bme1390I	CCNGG	1 cut(s)	416
Bme18I	GGWCC	1 cut(s)	98
BmgT120I	GGNCC	3 cut(s)	98, 351, 452
BmiI	GGNNCC	2 cut(s)	99, 100
BmrFI	CCNGG	1 cut(s)	416
BplI	GAGNNNNNCTC	2 cut(s)	171, 203
Bpu1102I	GCTNAGC	1 cut(s)	406
BsaJI	CCNNGG	3 cut(s)	45, 190, 538
Bse1I	ACTGG	1 cut(s)	455
BseBI	CCWGG	1 cut(s)	416
BseDI	CCNNGG	3 cut(s)	45, 190, 538
BseMII	CTCAG	3 cut(s)	135, 405, 420
BseNI	ACTGG	1 cut(s)	455
BseXI	GCAGC	3 cut(s)	11, 199, 227
BseYI	CCCAGC	1 cut(s)	256
BshFI	GGCC	2 cut(s)	353, 454
BsiHKAI	GWGCWC	1 cut(s)	267
BslFI	GGGAC	1 cut(s)	111
BsmAI	GTCTC	2 cut(s)	141, 330
BsmFI	GGGAC	1 cut(s)	111
BsmI	GAATGC	1 cut(s)	189
BsnI	GGCC	2 cut(s)	353, 454
Bsp1286I	GDGCHC	1 cut(s)	267
Bsp1720I	GCTNAGC	1 cut(s)	406
BspACI	CCGC	1 cut(s)	380
BspANI	GGCC	2 cut(s)	353, 454
BspCNI	CTCAG	3 cut(s)	134, 404, 419
BspLI	GGNNCC	2 cut(s)	99, 100
BspMAI	CTGCAG	2 cut(s)	29, 217
BspTI	CTTAAG	1 cut(s)	340
BsrI	ACTGG	1 cut(s)	455
BssECI	CCNNGG	3 cut(s)	45, 190, 538
BssT1I	CCWWGG	3 cut(s)	45, 190, 538
Bst2UI	CCWGG	1 cut(s)	416
Bst4CI	ACNGT	1 cut(s)	162
BstAFI	CTTAAG	1 cut(s)	340
BstDEI	CTNAG	4 cut(s)	121, 363, 391, 406
BstMAI	GTCTC	2 cut(s)	141, 330
BstNI	CCWGG	1 cut(s)	416
BstSCI	CCNGG	1 cut(s)	414
BstSFI	CTRYAG	3 cut(s)	25, 213, 309
BstV1I	GCAGC	3 cut(s)	11, 199, 227
BsuI	GTATCC	1 cut(s)	520
BsuRI	GGCC	2 cut(s)	353, 454
Cfr13I	GGNCC	3 cut(s)	98, 351, 452
Csp6I	GTAC	1 cut(s)	30
CviAII	CATG	1 cut(s)	432
CviQI	GTAC	1 cut(s)	30
DdeI	CTNAG	4 cut(s)	121, 363, 391, 406
Ecl136II	GAGCTC	1 cut(s)	265
Eco130I	CCWWGG	3 cut(s)	45, 190, 538
Eco24I	GRGCYC	1 cut(s)	267
Eco47I	GGWCC	1 cut(s)	98
Eco53kI	GAGCTC	1 cut(s)	265
Eco57I	CTGAAG	1 cut(s)	222
EcoICRI	GAGCTC	1 cut(s)	265
EcoO109I	RGGNCCY	1 cut(s)	98
EcoRII	CCWGG	1 cut(s)	414
EcoT14I	CCWWGG	3 cut(s)	45, 190, 538
EcoT38I	GRGCYC	1 cut(s)	267
ErhI	CCWWGG	3 cut(s)	45, 190, 538
FaeI	CATG	1 cut(s)	435
FaiI	YATR	5 cut(s)	230, 272, 388, 433, 470
FaqI	GGGAC	1 cut(s)	111
FatI	CATG	1 cut(s)	431
Fnu4HI	GCNGC	3 cut(s)	25, 213, 216
FriOI	GRGCYC	1 cut(s)	267
Fsp4HI	GCNGC	3 cut(s)	25, 213, 216
FspBI	CTAG	1 cut(s)	35
GluI	GCNGC	3 cut(s)	25, 213, 216
GsaI	CCCAGC	1 cut(s)	260
HaeIII	GGCC	2 cut(s)	353, 454
Hin1II	CATG	1 cut(s)	435
HinfI	GANTC	1 cut(s)	85
Hpy188I	TCNGA	1 cut(s)	111
Hpy188III	TCNNGA	1 cut(s)	393
HpyAV	CCTTC	1 cut(s)	537
HpyCH4III	ACNGT	1 cut(s)	162
HpyCH4V	TGCA	3 cut(s)	27, 215, 497
HpyF3I	CTNAG	4 cut(s)	121, 363, 391, 406
Hsp92II	CATG	1 cut(s)	435
KflI	GGGWCCC	1 cut(s)	98
LmnI	GCTCC	1 cut(s)	192
Lsp1109I	GCAGC	3 cut(s)	11, 199, 227
MaeI	CTAG	1 cut(s)	35
MaeIII	GTNAC	1 cut(s)	82
MboII	GAAGA	1 cut(s)	508
MhlI	GDGCHC	1 cut(s)	267
MluCI	AATT	2 cut(s)	9, 166
MlyI	GAGTC	1 cut(s)	79
MnlI	CCTC	2 cut(s)	130, 173
MseI	TTAA	5 cut(s)	245, 341, 356, 368, 441
MspCI	CTTAAG	1 cut(s)	340
MspR9I	CCNGG	1 cut(s)	416
Mva1269I	GAATGC	1 cut(s)	189
MvaI	CCWGG	1 cut(s)	416
NlaIII	CATG	1 cut(s)	435
NlaIV	GGNNCC	2 cut(s)	99, 100
NmuCI	GTSAC	1 cut(s)	82
PctI	GAATGC	1 cut(s)	189
PkrI	GCNGC	3 cut(s)	26, 214, 217
PleI	GAGTC	1 cut(s)	79
PpsI	GAGTC	1 cut(s)	79
PpuMI	RGGWCCY	1 cut(s)	98
Psp124BI	GAGCTC	1 cut(s)	267
Psp5II	RGGWCCY	1 cut(s)	98
Psp6I	CCWGG	1 cut(s)	414
PspFI	CCCAGC	1 cut(s)	256
PspGI	CCWGG	1 cut(s)	414
PspN4I	GGNNCC	2 cut(s)	99, 100
PspPI	GGNCC	3 cut(s)	98, 351, 452
PspPPI	RGGWCCY	1 cut(s)	98
PstI	CTGCAG	2 cut(s)	29, 217
RsaI	GTAC	1 cut(s)	31
RsaNI	GTAC	1 cut(s)	30
SacI	GAGCTC	1 cut(s)	267
SaqAI	TTAA	5 cut(s)	245, 341, 356, 368, 441
SatI	GCNGC	3 cut(s)	25, 213, 216
Sau96I	GGNCC	3 cut(s)	98, 351, 452
SchI	GAGTC	1 cut(s)	79
ScrFI	CCNGG	1 cut(s)	416
SduI	GDGCHC	1 cut(s)	267
SetI	ASST	8 cut(s)	26, 40, 47, 267, 374, 420, 540, 548
SfcI	CTRYAG	3 cut(s)	25, 213, 309
SinI	GGWCC	1 cut(s)	98
SmlI	CTYRAG	1 cut(s)	340
SmoI	CTYRAG	1 cut(s)	340
Sse9I	AATT	2 cut(s)	9, 166
SsiI	CCGC	1 cut(s)	380
SspMI	CTAG	1 cut(s)	35
SstI	GAGCTC	1 cut(s)	267
StyD4I	CCNGG	1 cut(s)	414
StyI	CCWWGG	3 cut(s)	45, 190, 538
TaaI	ACNGT	1 cut(s)	162
TaqI	TCGA	1 cut(s)	164
TasI	AATT	2 cut(s)	9, 166
Tru1I	TTAA	5 cut(s)	245, 341, 356, 368, 441
Tru9I	TTAA	5 cut(s)	245, 341, 356, 368, 441
TseFI	GTSAC	1 cut(s)	82
TseI	GCWGC	3 cut(s)	24, 212, 215
Tsp45I	GTSAC	1 cut(s)	82
TspDTI	ATGAA	2 cut(s)	67, 188
Vha464I	CTTAAG	1 cut(s)	340
VpaK11BI	GGWCC	1 cut(s)	98
XcmI	CCANNNNNNNNNTGG	1 cut(s)	165
XspI	CTAG	1 cut(s)	35

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.