Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr4

Orthogroup ID

OG0001686

Physical Location & Seq

Genomic Coordinates Reverse (-)

32249628 .. 32250117

Gene Structure 490 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw4G013770.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 405 bp

ATGGAAAAAATTGATCGGAGAAGCTGCAGTACCCTAGCTAAAACCTTGGGAACAATAGTTTCAATATCAGGGGCTTTCATTGTGACTCTTTACAAGGGACACCCACAACTGATGACAGCCTCAGTTGATTTATTGTCTCACAATAAACTTTTCTTGCCACAGTCGAATTGGGTCATTGGAGGAATGCTCCTTGGGTTTTATTGTGTGGTGGCTGCAGCATTTCTTATCGTACAGGCATCAGTATTAAAAAAATACCCAGTAGAGCTCATTATAGTCTTTTACTATTGCTTCTTTGTGGCTATTCAATCTGTAGTGGTGTTGTGGTTTGTGGAAAGAGACTCAAGTGCTTGGGCCTTAAACCCTAAGTTAAGTTTGTTTGCGGTTTTATACTCAGTAAGTAGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0005887 GO:0005938 GO:0006810 GO:0007154 GO:0007165 GO:0008150 GO:0009719 GO:0009725 GO:0009733 GO:0009734 GO:0009755 GO:0009987 GO:0010033 GO:0016020 GO:0016021 GO:0022857 GO:0023052 GO:0031224 GO:0031226 GO:0032870 GO:0042221 GO:0044424 GO:0044425 GO:0044444 GO:0044459 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0051716 GO:0055085 GO:0065007 GO:0070887 GO:0071310 GO:0071365 GO:0071495 GO:0071944 GO:0099568

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EamA

Protein Analysis

134

Amino Acids

14.94

Weight (kDa)

9.27

Isoelectric Point (pI)

36.44

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001686)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g34870 FvH4_4g34870 FvH4_4g34870 FvH4_4g34870 FvH4_4g34870 FvH4_4g34870 FvH4_4g34870 FvH4_4g34870
malus_domestica	MD13G1088500.v1.1 MD13G1088700.v1.1 MD16G1088800.v1.1 MD16G1088900.v1.1
prunus_persica	Prupe.1G257200_v2.0.a1 Prupe.1G257300_v2.0.a1 Prupe.1G257400_v2.0.a1 Prupe.1G257500_v2.0.a1 Prupe.1G257600_v2.0.a1 Prupe.1G257700_v2.0.a1
pyrus_communis	pycom13g07640 pycom13g07650 pycom16g07610
rosa_chinensis	RchiOBHm_Chr4g0411271 RchiOBHm_Chr4g0444271 RchiOBHm_Chr4g0444291 RchiOBHm_Chr4g0444301
rosa_laevigata	RLG00000005843
rosa_multiflora	Rmu_sc0002841.1_g000015
rosa_roxburghii	Rroxscaffold_5G00384840 Rroxscaffold_5G00384850
rosa_rugosa	Rorug03G0072000 Rorug03G0072100 Rorug04G0351100 Rorug04G0351200 Rorug04G0351300 Rorug04G0351300 Rorug04G0351300 Rorug04G0351300 Rorug07G0109600
rosa_samantha	Rh1BG171600 Rh4AG412000 Rh4BG070500 Rh4BG423500 Rh4CG078800 Rh4DG418700 Rh4DG418800
rosa_wichuraiana	Rw2G039380 Rw4G013770 Rw4G035390 Rw5G040980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	380
AfaI	GTAC	2 cut(s)	31, 231
AgsI	TTSAA	2 cut(s)	63, 305
AluBI	AGCT	3 cut(s)	24, 38, 265
AluI	AGCT	3 cut(s)	24, 38, 265
Alw21I	GWGCWC	1 cut(s)	267
Alw26I	GTCTC	2 cut(s)	141, 330
AoxI	GGCC	1 cut(s)	351
ApeKI	GCWGC	3 cut(s)	24, 212, 215
AspS9I	GGNCC	1 cut(s)	351
BanII	GRGCYC	1 cut(s)	267
BarI	GAAGNNNNNNTAC	2 cut(s)	13, 45
Bbv12I	GWGCWC	1 cut(s)	267
BbvI	GCAGC	3 cut(s)	11, 199, 227
BcoDI	GTCTC	2 cut(s)	141, 330
BfaI	CTAG	1 cut(s)	35
BfmI	CTRYAG	3 cut(s)	25, 213, 309
BisI	GCNGC	3 cut(s)	25, 213, 216
BlsI	GCNGC	3 cut(s)	26, 214, 217
BmgT120I	GGNCC	1 cut(s)	351
BmrI	ACTGGG	1 cut(s)	251
BmsI	GCATC	1 cut(s)	245
BmuI	ACTGGG	1 cut(s)	251
BplI	GAGNNNNNCTC	2 cut(s)	171, 203
BpuEI	CTTGAG	1 cut(s)	325
BsaJI	CCNNGG	2 cut(s)	45, 190
Bse1I	ACTGG	1 cut(s)	257
BseDI	CCNNGG	2 cut(s)	45, 190
BseMII	CTCAG	2 cut(s)	135, 405
BseNI	ACTGG	1 cut(s)	257
BseXI	GCAGC	3 cut(s)	11, 199, 227
BshFI	GGCC	1 cut(s)	353
BsiHKAI	GWGCWC	1 cut(s)	267
BslFI	GGGAC	1 cut(s)	111
BsmAI	GTCTC	2 cut(s)	141, 330
BsmFI	GGGAC	1 cut(s)	111
BsmI	GAATGC	1 cut(s)	189
BsnI	GGCC	1 cut(s)	353
Bsp1286I	GDGCHC	1 cut(s)	267
Bsp143I	GATC	1 cut(s)	13
BspACI	CCGC	1 cut(s)	380
BspANI	GGCC	1 cut(s)	353
BspCNI	CTCAG	2 cut(s)	134, 404
BspMAI	CTGCAG	2 cut(s)	29, 217
BsrI	ACTGG	1 cut(s)	257
BssECI	CCNNGG	2 cut(s)	45, 190
BssMI	GATC	1 cut(s)	13
BssT1I	CCWWGG	2 cut(s)	45, 190
Bst4CI	ACNGT	1 cut(s)	162
BstDEI	CTNAG	3 cut(s)	121, 363, 391
BstKTI	GATC	1 cut(s)	16
BstMAI	GTCTC	2 cut(s)	141, 330
BstMBI	GATC	1 cut(s)	13
BstSFI	CTRYAG	3 cut(s)	25, 213, 309
BstV1I	GCAGC	3 cut(s)	11, 199, 227
BsuRI	GGCC	1 cut(s)	353
Cfr13I	GGNCC	1 cut(s)	351
Csp6I	GTAC	2 cut(s)	30, 230
CviJI	RGCY	8 cut(s)	24, 38, 74, 119, 212, 265, 299, 353
CviKI_1	RGCY	8 cut(s)	24, 38, 74, 119, 212, 265, 299, 353
CviQI	GTAC	2 cut(s)	30, 230
DdeI	CTNAG	3 cut(s)	121, 363, 391
DpnI	GATC	1 cut(s)	15
DpnII	GATC	1 cut(s)	13
Ecl136II	GAGCTC	1 cut(s)	265
Eco130I	CCWWGG	2 cut(s)	45, 190
Eco24I	GRGCYC	1 cut(s)	267
Eco53kI	GAGCTC	1 cut(s)	265
EcoICRI	GAGCTC	1 cut(s)	265
EcoT14I	CCWWGG	2 cut(s)	45, 190
EcoT38I	GRGCYC	1 cut(s)	267
ErhI	CCWWGG	2 cut(s)	45, 190
FaiI	YATR	2 cut(s)	272, 388
FaqI	GGGAC	1 cut(s)	111
Fnu4HI	GCNGC	3 cut(s)	25, 213, 216
FriOI	GRGCYC	1 cut(s)	267
Fsp4HI	GCNGC	3 cut(s)	25, 213, 216
FspBI	CTAG	1 cut(s)	35
GluI	GCNGC	3 cut(s)	25, 213, 216
HaeIII	GGCC	1 cut(s)	353
HinfI	GANTC	2 cut(s)	85, 338
Hpy188I	TCNGA	1 cut(s)	18
HpyCH4III	ACNGT	1 cut(s)	162
HpyCH4V	TGCA	2 cut(s)	27, 215
HpyF3I	CTNAG	3 cut(s)	121, 363, 391
Kzo9I	GATC	1 cut(s)	13
LmnI	GCTCC	1 cut(s)	192
LpnPI	CCDG	3 cut(s)	54, 218, 270
Lsp1109I	GCAGC	3 cut(s)	11, 199, 227
LweI	GCATC	1 cut(s)	245
MaeI	CTAG	1 cut(s)	35
MaeIII	GTNAC	1 cut(s)	82
MalI	GATC	1 cut(s)	15
MboI	GATC	1 cut(s)	13
MhlI	GDGCHC	1 cut(s)	267
MluCI	AATT	2 cut(s)	9, 166
MlyI	GAGTC	2 cut(s)	79, 332
MnlI	CCTC	2 cut(s)	130, 173
MseI	TTAA	3 cut(s)	245, 356, 368
Mva1269I	GAATGC	1 cut(s)	189
NdeII	GATC	1 cut(s)	13
NmuCI	GTSAC	1 cut(s)	82
PctI	GAATGC	1 cut(s)	189
PkrI	GCNGC	3 cut(s)	26, 214, 217
PleI	GAGTC	2 cut(s)	79, 332
PpsI	GAGTC	2 cut(s)	79, 332
Psp124BI	GAGCTC	1 cut(s)	267
PspPI	GGNCC	1 cut(s)	351
PstI	CTGCAG	2 cut(s)	29, 217
RsaI	GTAC	2 cut(s)	31, 231
RsaNI	GTAC	2 cut(s)	30, 230
SacI	GAGCTC	1 cut(s)	267
SaqAI	TTAA	3 cut(s)	245, 356, 368
SatI	GCNGC	3 cut(s)	25, 213, 216
Sau3AI	GATC	1 cut(s)	13
Sau96I	GGNCC	1 cut(s)	351
SchI	GAGTC	2 cut(s)	79, 332
SduI	GDGCHC	1 cut(s)	267
SetI	ASST	4 cut(s)	26, 40, 47, 267
SfaNI	GCATC	1 cut(s)	245
SfcI	CTRYAG	3 cut(s)	25, 213, 309
SmlI	CTYRAG	1 cut(s)	340
SmoI	CTYRAG	1 cut(s)	340
Sse9I	AATT	2 cut(s)	9, 166
SsiI	CCGC	1 cut(s)	380
SspMI	CTAG	1 cut(s)	35
SstI	GAGCTC	1 cut(s)	267
StyI	CCWWGG	2 cut(s)	45, 190
TaaI	ACNGT	1 cut(s)	162
TaqI	TCGA	1 cut(s)	164
TasI	AATT	2 cut(s)	9, 166
Tru1I	TTAA	3 cut(s)	245, 356, 368
Tru9I	TTAA	3 cut(s)	245, 356, 368
TseFI	GTSAC	1 cut(s)	82
TseI	GCWGC	3 cut(s)	24, 212, 215
Tsp45I	GTSAC	1 cut(s)	82
TspDTI	ATGAA	1 cut(s)	67
XcmI	CCANNNNNNNNNTGG	1 cut(s)	165
XspI	CTAG	1 cut(s)	35

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.