Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0001686

Physical Location & Seq

Genomic Coordinates Forward (+)

26771575 .. 26773766

Gene Structure 2192 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G257700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1056 bp

ATGGGGAAGGTTGCAGCACTACCAATAGTTGGGATGGTGTTGGCTGAGAGTGCACAAGCTGGGCTAATTATAGTGAGCAAATTAGCAATGTCTAATGGCATGAGCAACCTCATCTTTCTCTGCTACTCAAACGCTCTTGCAGCCCTTATCCTCCTCCCAATTTCCTTAGCCTTCCACAGATCCGAGCGTCCTCCTCTCACTTTCTCTACCCTCTGTTGGTTCTTCTTGCTTGGTCTAATTGGATTCATGGCGCAGTTTTTTGGGTATGCTGGGATTAATTTGAGCTCTCCTACTCTGAGCACGGCTATGCTCAACCTCATTCCAGCTTTTACCTTTATACTGGCAGTCATCTTTAGAATGGAAAGAATTGATGGGAGAAGCTCCAGTAGCCTTGCTAAAACTTTGGGAACAATAGTTTCAATTTCAGGGGCTTTCATTGTTACTCTTTACAAGGGTCCCCCACTTCTGATGACATCCTCAACTGATATATTGTCTCATAACCAACTTTTCTTGGAACAGTCAAACTGGGTCCTTGGAGGAATGTGCATTGCTCTTAATTGTGTGTTGGCCTCATCTTGGCTTATAGTACAGGCATCAGTTCTAAAGAAATATCCCGCAGAGCTGATTATGGTATTTTATTATTGCTTCTTTGTGGCTATTCAATCTGTAGTAGTCTCTTTGACTGTAGAAAGAGACCTAAGTGCGTGGGAATTGAAGCCTAAAATCCGGTTGATCGCTGTTCTATACTCGGGAGTCTTTGGCTCAGCATTCCAGGTTGGTGTATCTACTTGGTGCCTTCACAGGACGGGGCCTGTTTTTGTAGCTATTTTCAAGCCTTTGGGGATTGTCATTACAGTTTTCGTTGGTGCCACCTTCTTAGGAGATACTTTCTACCTTGGAAGTTTGATAGGAGCAATTGTTATTGTCATGGGATTTTATTCTGTGATGTGGGGAAAAGCAAAAGAAGAGAAGATGGATGATGATGCAGGGGCAAGGAGTGTGGCATCAAGTAGACAACGGGTCCCTCTATTGCAGAGCCATATTGAAGAAATATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0005887 GO:0005938 GO:0006810 GO:0007154 GO:0007165 GO:0008150 GO:0009719 GO:0009725 GO:0009733 GO:0009734 GO:0009755 GO:0009987 GO:0010033 GO:0016020 GO:0016021 GO:0022857 GO:0023052 GO:0031224 GO:0031226 GO:0032870 GO:0042221 GO:0044424 GO:0044425 GO:0044444 GO:0044459 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0051716 GO:0055085 GO:0065007 GO:0070887 GO:0071310 GO:0071365 GO:0071495 GO:0071944 GO:0099568

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EamA

Protein Analysis

352

Amino Acids

38.12

Weight (kDa)

8.87

Isoelectric Point (pI)

38.6

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001686)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g34870 FvH4_4g34870 FvH4_4g34870 FvH4_4g34870 FvH4_4g34870 FvH4_4g34870 FvH4_4g34870 FvH4_4g34870
malus_domestica	MD13G1088500.v1.1 MD13G1088700.v1.1 MD16G1088800.v1.1 MD16G1088900.v1.1
prunus_persica	Prupe.1G257200_v2.0.a1 Prupe.1G257300_v2.0.a1 Prupe.1G257400_v2.0.a1 Prupe.1G257500_v2.0.a1 Prupe.1G257600_v2.0.a1 Prupe.1G257700_v2.0.a1
pyrus_communis	pycom13g07640 pycom13g07650 pycom16g07610
rosa_chinensis	RchiOBHm_Chr4g0411271 RchiOBHm_Chr4g0444271 RchiOBHm_Chr4g0444291 RchiOBHm_Chr4g0444301
rosa_laevigata	RLG00000005843
rosa_multiflora	Rmu_sc0002841.1_g000015
rosa_roxburghii	Rroxscaffold_5G00384840 Rroxscaffold_5G00384850
rosa_rugosa	Rorug03G0072000 Rorug03G0072100 Rorug04G0351100 Rorug04G0351200 Rorug04G0351300 Rorug04G0351300 Rorug04G0351300 Rorug04G0351300 Rorug07G0109600
rosa_samantha	Rh1BG171600 Rh4AG412000 Rh4BG070500 Rh4BG423500 Rh4CG078800 Rh4DG418700 Rh4DG418800
rosa_wichuraiana	Rw2G039380 Rw4G013770 Rw4G035390 Rw5G040980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	792, 866
AccB7I	CCANNNNNTGG	1 cut(s)	29
AccI	GTMKAC	1 cut(s)	1012
AciI	CCGC	1 cut(s)	615
AclWI	GGATC	1 cut(s)	174
AfaI	GTAC	1 cut(s)	588
AfiI	CCNNNNNNNGG	3 cut(s)	29, 216, 576
AgsI	TTSAA	5 cut(s)	420, 662, 715, 832, 1046
AhdI	GACNNNNNGTC	1 cut(s)	1019
AjnI	CCWGG	1 cut(s)	771
AluBI	AGCT	6 cut(s)	59, 285, 326, 381, 622, 824
AluI	AGCT	6 cut(s)	59, 285, 326, 381, 622, 824
Alw21I	GWGCWC	3 cut(s)	55, 287, 302
Alw26I	GTCTC	3 cut(s)	498, 679, 687
Alw44I	GTGCAC	1 cut(s)	51
AlwI	GGATC	1 cut(s)	174
Ama87I	CYCGRG	1 cut(s)	748
AoxI	GGCC	2 cut(s)	567, 809
ApaLI	GTGCAC	1 cut(s)	51
ApeKI	GCWGC	2 cut(s)	14, 140
AseI	ATTAAT	1 cut(s)	276
AspLEI	GCGC	1 cut(s)	253
AspS9I	GGNCC	4 cut(s)	455, 529, 809, 1021
AvaI	CYCGRG	1 cut(s)	748
AvaII	GGWCC	3 cut(s)	455, 529, 1021
BaeGI	GKGCMC	1 cut(s)	55
BanI	GGYRCC	2 cut(s)	792, 866
BanII	GRGCYC	1 cut(s)	287
Bbv12I	GWGCWC	3 cut(s)	55, 287, 302
BbvI	GCAGC	2 cut(s)	26, 152
BccI	CCATC	3 cut(s)	28, 365, 967
BceAI	ACGGC	1 cut(s)	318
BciT130I	CCWGG	1 cut(s)	773
BcoDI	GTCTC	3 cut(s)	498, 679, 687
BfmI	CTRYAG	2 cut(s)	666, 684
BisI	GCNGC	2 cut(s)	15, 141
BlpI	GCTNAGC	1 cut(s)	763
BlsI	GCNGC	2 cut(s)	16, 142
Bme1390I	CCNGG	1 cut(s)	773
Bme18I	GGWCC	3 cut(s)	455, 529, 1021
BmeRI	GACNNNNNGTC	1 cut(s)	1019
BmeT110I	CYCGRG	1 cut(s)	748
BmgT120I	GGNCC	4 cut(s)	455, 529, 809, 1021
BmiI	GGNNCC	8 cut(s)	456, 457, 530, 794, 810, 868, 1022, 1023
BmrFI	CCNGG	1 cut(s)	773
BmrI	ACTGGG	1 cut(s)	535
BmsI	GCATC	3 cut(s)	602, 973, 1013
BmuI	ACTGGG	1 cut(s)	535
BpmI	CTGGAG	1 cut(s)	367
Bpu10I	CCTNAGC	1 cut(s)	166
Bpu1102I	GCTNAGC	1 cut(s)	763
BsaI	GGTCTC	1 cut(s)	687
BsaJI	CCNNGG	2 cut(s)	532, 895
BsaWI	WCCGGW	1 cut(s)	726
BsaXI	ACNNNNNCTCC	2 cut(s)	903, 933
Bsc4I	CCNNNNNNNGG	3 cut(s)	29, 216, 576
Bse1I	ACTGG	3 cut(s)	345, 384, 530
Bse3DI	GCAATG	2 cut(s)	93, 546
BseBI	CCWGG	1 cut(s)	773
BseDI	CCNNGG	2 cut(s)	532, 895
BseGI	GGATG	3 cut(s)	39, 473, 982
BseLI	CCNNNNNNNGG	3 cut(s)	29, 216, 576
BseMI	GCAATG	2 cut(s)	93, 546
BseMII	CTCAG	3 cut(s)	36, 287, 777
BseNI	ACTGG	3 cut(s)	345, 384, 530
BseRI	GAGGAG	2 cut(s)	143, 183
BseSI	GKGCMC	1 cut(s)	55
BseXI	GCAGC	2 cut(s)	26, 152
BseYI	CCCAGC	2 cut(s)	59, 269
BshFI	GGCC	2 cut(s)	569, 811
BshNI	GGYRCC	2 cut(s)	792, 866
BsiHKAI	GWGCWC	3 cut(s)	55, 287, 302
BsiHKCI	CYCGRG	1 cut(s)	748
BsiSI	CCGG	1 cut(s)	727
BslFI	GGGAC	2 cut(s)	441, 1007
BslI	CCNNNNNNNGG	3 cut(s)	29, 216, 576
BsmAI	GTCTC	3 cut(s)	498, 679, 687
BsmFI	GGGAC	2 cut(s)	441, 1007
BsmI	GAATGC	1 cut(s)	767
BsnI	GGCC	2 cut(s)	569, 811
Bso31I	GGTCTC	1 cut(s)	687
BsoBI	CYCGRG	1 cut(s)	748
Bsp1286I	GDGCHC	3 cut(s)	55, 287, 302
Bsp143I	GATC	2 cut(s)	179, 732
Bsp1720I	GCTNAGC	1 cut(s)	763
BspACI	CCGC	1 cut(s)	615
BspANI	GGCC	2 cut(s)	569, 811
BspCNI	CTCAG	3 cut(s)	37, 288, 776
BspLI	GGNNCC	8 cut(s)	456, 457, 530, 794, 810, 868, 1022, 1023
BspPI	GGATC	1 cut(s)	174
BspT107I	GGYRCC	2 cut(s)	792, 866
BspTNI	GGTCTC	1 cut(s)	687
BsrDI	GCAATG	2 cut(s)	93, 546
BsrI	ACTGG	3 cut(s)	345, 384, 530
BssECI	CCNNGG	2 cut(s)	532, 895
BssMI	GATC	2 cut(s)	179, 732
BssT1I	CCWWGG	2 cut(s)	532, 895
Bst2UI	CCWGG	1 cut(s)	773
Bst4CI	ACNGT	3 cut(s)	519, 685, 856
Bst6I	CTCTTC	1 cut(s)	960
BstDEI	CTNAG	6 cut(s)	45, 166, 296, 698, 763, 877
BstF5I	GGATG	3 cut(s)	39, 473, 982
BstHHI	GCGC	1 cut(s)	253
BstKTI	GATC	2 cut(s)	182, 735
BstMAI	GTCTC	3 cut(s)	498, 679, 687
BstMBI	GATC	2 cut(s)	179, 732
BstMWI	GCNNNNNNNGC	3 cut(s)	50, 140, 387
BstNI	CCWGG	1 cut(s)	773
BstSCI	CCNGG	1 cut(s)	771
BstSFI	CTRYAG	2 cut(s)	666, 684
BstSLI	GKGCMC	1 cut(s)	55
BstV1I	GCAGC	2 cut(s)	26, 152
BstX2I	RGATCY	1 cut(s)	179
BstYI	RGATCY	1 cut(s)	179
BsuRI	GGCC	2 cut(s)	569, 811
BtsCI	GGATG	3 cut(s)	39, 473, 982
CfoI	GCGC	1 cut(s)	253
Cfr13I	GGNCC	4 cut(s)	455, 529, 809, 1021
CseI	GACGC	1 cut(s)	176
Csp6I	GTAC	1 cut(s)	587
CspCI	CAANNNNNGTGG	2 cut(s)	981, 1016
CviAII	CATG	3 cut(s)	100, 247, 928
CviQI	GTAC	1 cut(s)	587
DdeI	CTNAG	6 cut(s)	45, 166, 296, 698, 763, 877
DpnI	GATC	2 cut(s)	181, 734
DpnII	GATC	2 cut(s)	179, 732
DriI	GACNNNNNGTC	1 cut(s)	1019
Eam1104I	CTCTTC	1 cut(s)	960
Eam1105I	GACNNNNNGTC	1 cut(s)	1019
EarI	CTCTTC	1 cut(s)	960
Ecl136II	GAGCTC	1 cut(s)	285
Eco130I	CCWWGG	2 cut(s)	532, 895
Eco24I	GRGCYC	1 cut(s)	287
Eco31I	GGTCTC	1 cut(s)	687
Eco47I	GGWCC	3 cut(s)	455, 529, 1021
Eco53kI	GAGCTC	1 cut(s)	285
Eco88I	CYCGRG	1 cut(s)	748
EcoICRI	GAGCTC	1 cut(s)	285
EcoO109I	RGGNCCY	4 cut(s)	455, 529, 809, 1021
EcoRII	CCWGG	1 cut(s)	771
EcoT14I	CCWWGG	2 cut(s)	532, 895
EcoT38I	GRGCYC	1 cut(s)	287
ErhI	CCWWGG	2 cut(s)	532, 895
FaeI	CATG	3 cut(s)	103, 250, 931
FaqI	GGGAC	2 cut(s)	441, 1007
FatI	CATG	3 cut(s)	99, 246, 927
FauI	CCCGC	1 cut(s)	622
FblI	GTMKAC	1 cut(s)	1012
Fnu4HI	GCNGC	2 cut(s)	15, 141
FokI	GGATG	3 cut(s)	46, 460, 989
FriOI	GRGCYC	1 cut(s)	287
Fsp4HI	GCNGC	2 cut(s)	15, 141
GlaI	GCGC	1 cut(s)	252
GluI	GCNGC	2 cut(s)	15, 141
GsaI	CCCAGC	2 cut(s)	63, 273
GsuI	CTGGAG	1 cut(s)	367
HaeIII	GGCC	2 cut(s)	569, 811
HapII	CCGG	1 cut(s)	727
HgaI	GACGC	1 cut(s)	176
HhaI	GCGC	1 cut(s)	253
Hin1II	CATG	3 cut(s)	103, 250, 931
Hin6I	GCGC	1 cut(s)	251
HinP1I	GCGC	1 cut(s)	251
HinfI	GANTC	2 cut(s)	243, 753
HpaII	CCGG	1 cut(s)	727
Hpy166II	GTNNAC	2 cut(s)	53, 1013
Hpy188I	TCNGA	3 cut(s)	184, 297, 468
Hpy188III	TCNNGA	1 cut(s)	750
Hpy8I	GTNNAC	2 cut(s)	53, 1013
HpyAV	CCTTC	3 cut(s)	181, 806, 883
HpyCH4III	ACNGT	3 cut(s)	519, 685, 856
HpyCH4V	TGCA	6 cut(s)	14, 53, 140, 546, 986, 1033
HpyF10VI	GCNNNNNNNGC	3 cut(s)	50, 140, 387
HpyF3I	CTNAG	6 cut(s)	45, 166, 296, 698, 763, 877
Hsp92II	CATG	3 cut(s)	103, 250, 931
HspAI	GCGC	1 cut(s)	251
KflI	GGGWCCC	2 cut(s)	455, 1021
Kzo9I	GATC	2 cut(s)	179, 732
LmnI	GCTCC	2 cut(s)	386, 911
Lsp1109I	GCAGC	2 cut(s)	26, 152
LweI	GCATC	3 cut(s)	602, 973, 1013
MaeIII	GTNAC	1 cut(s)	439
MalI	GATC	2 cut(s)	181, 734
MboI	GATC	2 cut(s)	179, 732
MboII	GAAGA	3 cut(s)	214, 977, 982
MfeI	CAATTG	1 cut(s)	915
MflI	RGATCY	1 cut(s)	179
MhlI	GDGCHC	3 cut(s)	55, 287, 302
MlyI	GAGTC	1 cut(s)	762
MseI	TTAA	2 cut(s)	276, 555
MslI	CAYNNNNRTG	1 cut(s)	305
MspI	CCGG	1 cut(s)	727
MspR9I	CCNGG	1 cut(s)	773
MunI	CAATTG	1 cut(s)	915
Mva1269I	GAATGC	1 cut(s)	767
MvaI	CCWGG	1 cut(s)	773
MwoI	GCNNNNNNNGC	3 cut(s)	50, 140, 387
NdeII	GATC	2 cut(s)	179, 732
NlaIII	CATG	3 cut(s)	103, 250, 931
NlaIV	GGNNCC	8 cut(s)	456, 457, 530, 794, 810, 868, 1022, 1023
PctI	GAATGC	1 cut(s)	767
PfeI	GAWTC	1 cut(s)	243
PflMI	CCANNNNNTGG	1 cut(s)	29
PkrI	GCNGC	2 cut(s)	16, 142
PleI	GAGTC	1 cut(s)	761
PpsI	GAGTC	1 cut(s)	761
PpuMI	RGGWCCY	3 cut(s)	455, 529, 1021
PshBI	ATTAAT	1 cut(s)	276
Psp124BI	GAGCTC	1 cut(s)	287
Psp5II	RGGWCCY	3 cut(s)	455, 529, 1021
Psp6I	CCWGG	1 cut(s)	771
PspFI	CCCAGC	2 cut(s)	59, 269
PspGI	CCWGG	1 cut(s)	771
PspN4I	GGNNCC	8 cut(s)	456, 457, 530, 794, 810, 868, 1022, 1023
PspPI	GGNCC	4 cut(s)	455, 529, 809, 1021
PspPPI	RGGWCCY	3 cut(s)	455, 529, 1021
PsuI	RGATCY	1 cut(s)	179
RsaI	GTAC	1 cut(s)	588
RsaNI	GTAC	1 cut(s)	587
RseI	CAYNNNNRTG	1 cut(s)	305
SacI	GAGCTC	1 cut(s)	287
SaqAI	TTAA	2 cut(s)	276, 555
SatI	GCNGC	2 cut(s)	15, 141
Sau3AI	GATC	2 cut(s)	179, 732
Sau96I	GGNCC	4 cut(s)	455, 529, 809, 1021
SchI	GAGTC	1 cut(s)	762
ScrFI	CCNGG	1 cut(s)	773
SduI	GDGCHC	3 cut(s)	55, 287, 302
SfaNI	GCATC	3 cut(s)	602, 973, 1013
SfcI	CTRYAG	2 cut(s)	666, 684
SinI	GGWCC	3 cut(s)	455, 529, 1021
SmiMI	CAYNNNNRTG	1 cut(s)	305
SsiI	CCGC	1 cut(s)	615
SstI	GAGCTC	1 cut(s)	287
StyD4I	CCNGG	1 cut(s)	771
StyI	CCWWGG	2 cut(s)	532, 895
TaaI	ACNGT	3 cut(s)	519, 685, 856
TatI	WGTACW	1 cut(s)	586
TfiI	GAWTC	1 cut(s)	243
Tru1I	TTAA	2 cut(s)	276, 555
Tru9I	TTAA	2 cut(s)	276, 555
TseI	GCWGC	2 cut(s)	14, 140
TspDTI	ATGAA	2 cut(s)	235, 424
Van91I	CCANNNNNTGG	1 cut(s)	29
VneI	GTGCAC	1 cut(s)	51
VpaK11BI	GGWCC	3 cut(s)	455, 529, 1021
VspI	ATTAAT	1 cut(s)	276
XmiI	GTMKAC	1 cut(s)	1012

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.