Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0001686

Physical Location & Seq

Genomic Coordinates Reverse (-)

2291763 .. 2293782

Gene Structure 2020 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000005843

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1023 bp

ATGGCGAAGATTGCAGCACTGCCAATAGTGGGGATGGTCTTAGCTGAGTGTGCCCAAGCTGGGTTAATGATAGTAAGCAAAGCAGCCATGTCTACTGGTATGAACAACCTCATCTTTGTCTGCTACTCCAACGCTCTTGCCGCTTTTGTTCTTCTCCCAACTTCTCTATTCTTTCACAGATCAACAGAGCGGCCTCCGATCACTTCCTCTATCCTCTGTTGGTTCTTCTTGCTTGGTCTACTTGGTTTAGTTATCTCGTTATATTGTAGTATGCTGATGAGCTTTCTCTCATTCCAGATAAGAGTTCTGCAATGCATTTTTGAAATGGAAAAAATTGATGGGAGAAGCCGCAGTACCCTAGCTAAAACCTTGGGAACCATAGTTTCAATATCAGGGGCTTTCATTGTGACTCTTTACAAGGGACCCCCACTTCTGATGACAGCCTCAGTGGATTTATTGTCTCACAATCAACTTTTCTTGCCACAGTCGAATTGGGTCATTGGAGGAATGCTCCTTGGGTTTTATTGTGTGGTGGCTGCAGCATTTCTTATCATACAGGCATCAGTATTAAAAAAATACCCAGCAGAACTCATTATAGTCTTTTACTATTGCTTCTTTGTGGCTATTCAATCTGTAGTGGTGTTGTGGTTTGTGGAAAGAGACTTAAGTGCTTGGGCCTTAAACCCTAAGTTAAGGTTGTTTGCGGTTCTATACTCAGGAGTTTTTGGCTCAGCCTTCCAGGTTGGTGTATCTACATGGTGTCTTAACAGGACAGGGCCAGTTTTTGTATCTATGTTCAAGCCTTTAGGGATTGTAGTTGCAGTTGCCATTGGTGTTATCTTCTTAGGGGATACTTTCTACCTTGGAAGTTTGATAGGAGCAATTGTAATTGTCACTGGATTTTACTCTGTGATATGGGGCAAAGCCAATGAGGAGAAGATGGATGATGATGCAGAGGCAAGGAGTTTGGCATCAAAGAAACAACGGATTCCATTACTGCAAAACATTATTGAAGAAATCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0005887 GO:0005938 GO:0006810 GO:0007154 GO:0007165 GO:0008150 GO:0009719 GO:0009725 GO:0009733 GO:0009734 GO:0009755 GO:0009987 GO:0010033 GO:0016020 GO:0016021 GO:0022857 GO:0023052 GO:0031224 GO:0031226 GO:0032870 GO:0042221 GO:0044424 GO:0044425 GO:0044444 GO:0044459 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0051716 GO:0055085 GO:0065007 GO:0070887 GO:0071310 GO:0071365 GO:0071495 GO:0071944 GO:0099568

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EamA

Protein Analysis

341

Amino Acids

37.27

Weight (kDa)

8.74

Isoelectric Point (pI)

35.8

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EamA	PF00892	169 - 304	4.5e-09	EamA-like transporter family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001686)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g34870 FvH4_4g34870 FvH4_4g34870 FvH4_4g34870 FvH4_4g34870 FvH4_4g34870 FvH4_4g34870 FvH4_4g34870
malus_domestica	MD13G1088500.v1.1 MD13G1088700.v1.1 MD16G1088800.v1.1 MD16G1088900.v1.1
prunus_persica	Prupe.1G257200_v2.0.a1 Prupe.1G257300_v2.0.a1 Prupe.1G257400_v2.0.a1 Prupe.1G257500_v2.0.a1 Prupe.1G257600_v2.0.a1 Prupe.1G257700_v2.0.a1
pyrus_communis	pycom13g07640 pycom13g07650 pycom16g07610
rosa_chinensis	RchiOBHm_Chr4g0411271 RchiOBHm_Chr4g0444271 RchiOBHm_Chr4g0444291 RchiOBHm_Chr4g0444301
rosa_laevigata	RLG00000005843
rosa_multiflora	Rmu_sc0002841.1_g000015
rosa_roxburghii	Rroxscaffold_5G00384840 Rroxscaffold_5G00384850
rosa_rugosa	Rorug03G0072000 Rorug03G0072100 Rorug04G0351100 Rorug04G0351200 Rorug04G0351300 Rorug04G0351300 Rorug04G0351300 Rorug04G0351300 Rorug07G0109600
rosa_samantha	Rh1BG171600 Rh4AG412000 Rh4BG070500 Rh4BG423500 Rh4CG078800 Rh4DG418700 Rh4DG418800
rosa_wichuraiana	Rw2G039380 Rw4G013770 Rw4G035390 Rw5G040980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	190
AccI	GTMKAC	2 cut(s)	92, 238
AciI	CCGC	4 cut(s)	141, 190, 349, 704
AfaI	GTAC	1 cut(s)	355
AfiI	CCNNNNNNNGG	2 cut(s)	29, 60
AflII	CTTAAG	1 cut(s)	664
AgsI	TTSAA	5 cut(s)	323, 387, 629, 799, 1013
AjnI	CCWGG	1 cut(s)	738
AluBI	AGCT	4 cut(s)	44, 59, 282, 362
AluI	AGCT	4 cut(s)	44, 59, 282, 362
Alw26I	GTCTC	2 cut(s)	465, 654
AoxI	GGCC	3 cut(s)	191, 675, 776
ApeKI	GCWGC	4 cut(s)	14, 83, 536, 539
AspS9I	GGNCC	3 cut(s)	422, 675, 776
AvaII	GGWCC	1 cut(s)	422
BaeGI	GKGCMC	1 cut(s)	55
BarI	GAAGNNNNNNTAC	2 cut(s)	337, 369
BbvI	GCAGC	4 cut(s)	26, 95, 523, 551
BccI	CCATC	3 cut(s)	28, 332, 934
BciT130I	CCWGG	1 cut(s)	740
BciVI	GTATCC	1 cut(s)	844
BcoDI	GTCTC	2 cut(s)	465, 654
BfaI	CTAG	2 cut(s)	359, 1021
BfmI	CTRYAG	2 cut(s)	537, 633
BfrI	CTTAAG	1 cut(s)	664
BfuI	GTATCC	1 cut(s)	844
BisI	GCNGC	7 cut(s)	15, 84, 141, 191, 349, 537, 540
BlpI	GCTNAGC	1 cut(s)	730
BlsI	GCNGC	7 cut(s)	16, 85, 142, 192, 350, 538, 541
Bme1390I	CCNGG	1 cut(s)	740
Bme18I	GGWCC	1 cut(s)	422
BmgT120I	GGNCC	3 cut(s)	422, 675, 776
BmiI	GGNNCC	3 cut(s)	376, 423, 424
BmrFI	CCNGG	1 cut(s)	740
BmsI	GCATC	3 cut(s)	569, 940, 980
BplI	GAGNNNNNCTC	2 cut(s)	495, 527
Bpu1102I	GCTNAGC	1 cut(s)	730
BsaJI	CCNNGG	3 cut(s)	369, 514, 862
BsaXI	ACNNNNNCTCC	2 cut(s)	870, 900
Bsc4I	CCNNNNNNNGG	2 cut(s)	29, 60
Bse1I	ACTGG	3 cut(s)	100, 779, 901
Bse3DI	GCAATG	1 cut(s)	317
BseBI	CCWGG	1 cut(s)	740
BseDI	CCNNGG	3 cut(s)	369, 514, 862
BseGI	GGATG	2 cut(s)	39, 949
BseLI	CCNNNNNNNGG	2 cut(s)	29, 60
BseMI	GCAATG	1 cut(s)	317
BseMII	CTCAG	4 cut(s)	36, 459, 729, 744
BseNI	ACTGG	3 cut(s)	100, 779, 901
BseRI	GAGGAG	1 cut(s)	947
BseSI	GKGCMC	1 cut(s)	55
BseXI	GCAGC	4 cut(s)	26, 95, 523, 551
BseYI	CCCAGC	2 cut(s)	59, 580
BshFI	GGCC	3 cut(s)	193, 677, 778
BslFI	GGGAC	1 cut(s)	435
BslI	CCNNNNNNNGG	2 cut(s)	29, 60
BsmAI	GTCTC	2 cut(s)	465, 654
BsmFI	GGGAC	1 cut(s)	435
BsmI	GAATGC	1 cut(s)	513
BsnI	GGCC	3 cut(s)	193, 677, 778
Bsp1286I	GDGCHC	1 cut(s)	55
Bsp143I	GATC	2 cut(s)	179, 198
Bsp1720I	GCTNAGC	1 cut(s)	730
BspACI	CCGC	4 cut(s)	141, 190, 349, 704
BspANI	GGCC	3 cut(s)	193, 677, 778
BspCNI	CTCAG	4 cut(s)	37, 458, 728, 743
BspLI	GGNNCC	3 cut(s)	376, 423, 424
BspMAI	CTGCAG	1 cut(s)	541
BspTI	CTTAAG	1 cut(s)	664
BsrBI	CCGCTC	1 cut(s)	190
BsrDI	GCAATG	1 cut(s)	317
BsrI	ACTGG	3 cut(s)	100, 779, 901
BssECI	CCNNGG	3 cut(s)	369, 514, 862
BssMI	GATC	2 cut(s)	179, 198
BssT1I	CCWWGG	3 cut(s)	369, 514, 862
Bst2UI	CCWGG	1 cut(s)	740
Bst4CI	ACNGT	1 cut(s)	486
BstAFI	CTTAAG	1 cut(s)	664
BstDEI	CTNAG	7 cut(s)	40, 45, 445, 687, 715, 730, 844
BstF5I	GGATG	2 cut(s)	39, 949
BstKTI	GATC	2 cut(s)	182, 201
BstMAI	GTCTC	2 cut(s)	465, 654
BstMBI	GATC	2 cut(s)	179, 198
BstMWI	GCNNNNNNNGC	3 cut(s)	11, 50, 140
BstNI	CCWGG	1 cut(s)	740
BstSCI	CCNGG	1 cut(s)	738
BstSFI	CTRYAG	2 cut(s)	537, 633
BstSLI	GKGCMC	1 cut(s)	55
BstV1I	GCAGC	4 cut(s)	26, 95, 523, 551
BsuI	GTATCC	1 cut(s)	844
BsuRI	GGCC	3 cut(s)	193, 677, 778
BtsCI	GGATG	2 cut(s)	39, 949
BtsI	GCAGTG	1 cut(s)	17
BtsIMutI	CAGTG	3 cut(s)	17, 453, 894
Cfr13I	GGNCC	3 cut(s)	422, 675, 776
Csp6I	GTAC	1 cut(s)	354
CviAII	CATG	2 cut(s)	88, 756
CviQI	GTAC	1 cut(s)	354
DdeI	CTNAG	7 cut(s)	40, 45, 445, 687, 715, 730, 844
DpnI	GATC	2 cut(s)	181, 200
DpnII	GATC	2 cut(s)	179, 198
Eco130I	CCWWGG	3 cut(s)	369, 514, 862
Eco47I	GGWCC	1 cut(s)	422
EcoO109I	RGGNCCY	1 cut(s)	422
EcoRII	CCWGG	1 cut(s)	738
EcoT14I	CCWWGG	3 cut(s)	369, 514, 862
EcoT22I	ATGCAT	1 cut(s)	317
ErhI	CCWWGG	3 cut(s)	369, 514, 862
FaeI	CATG	2 cut(s)	91, 759
FaqI	GGGAC	1 cut(s)	435
FatI	CATG	2 cut(s)	87, 755
FblI	GTMKAC	2 cut(s)	92, 238
Fnu4HI	GCNGC	7 cut(s)	15, 84, 141, 191, 349, 537, 540
FokI	GGATG	2 cut(s)	46, 956
Fsp4HI	GCNGC	7 cut(s)	15, 84, 141, 191, 349, 537, 540
FspBI	CTAG	2 cut(s)	359, 1021
GluI	GCNGC	7 cut(s)	15, 84, 141, 191, 349, 537, 540
GsaI	CCCAGC	2 cut(s)	63, 584
HaeIII	GGCC	3 cut(s)	193, 677, 778
Hin1II	CATG	2 cut(s)	91, 759
HinfI	GANTC	2 cut(s)	409, 988
Hpy166II	GTNNAC	2 cut(s)	93, 239
Hpy188I	TCNGA	2 cut(s)	198, 435
Hpy188III	TCNNGA	2 cut(s)	295, 717
Hpy8I	GTNNAC	2 cut(s)	93, 239
HpyAV	CCTTC	1 cut(s)	745
HpyCH4III	ACNGT	1 cut(s)	486
HpyCH4V	TGCA	7 cut(s)	14, 310, 315, 539, 821, 953, 1000
HpyF10VI	GCNNNNNNNGC	3 cut(s)	11, 50, 140
HpyF3I	CTNAG	7 cut(s)	40, 45, 445, 687, 715, 730, 844
Hsp92II	CATG	2 cut(s)	91, 759
KflI	GGGWCCC	1 cut(s)	422
Kzo9I	GATC	2 cut(s)	179, 198
LmnI	GCTCC	2 cut(s)	516, 878
Lsp1109I	GCAGC	4 cut(s)	26, 95, 523, 551
LweI	GCATC	3 cut(s)	569, 940, 980
MaeI	CTAG	2 cut(s)	359, 1021
MaeIII	GTNAC	2 cut(s)	406, 892
MalI	GATC	2 cut(s)	181, 200
MbiI	CCGCTC	1 cut(s)	190
MboI	GATC	2 cut(s)	179, 198
MboII	GAAGA	5 cut(s)	19, 143, 217, 832, 949
MfeI	CAATTG	1 cut(s)	882
MhlI	GDGCHC	1 cut(s)	55
MluCI	AATT	4 cut(s)	333, 490, 882, 888
MlyI	GAGTC	1 cut(s)	403
MmeI	TCCRAC	1 cut(s)	153
MnlI	CCTC	8 cut(s)	119, 204, 217, 224, 454, 497, 925, 949
Mph1103I	ATGCAT	1 cut(s)	317
MseI	TTAA	6 cut(s)	65, 569, 665, 680, 692, 765
MspCI	CTTAAG	1 cut(s)	664
MspR9I	CCNGG	1 cut(s)	740
MunI	CAATTG	1 cut(s)	882
Mva1269I	GAATGC	1 cut(s)	513
MvaI	CCWGG	1 cut(s)	740
MwoI	GCNNNNNNNGC	3 cut(s)	11, 50, 140
NdeII	GATC	2 cut(s)	179, 198
NlaIII	CATG	2 cut(s)	91, 759
NlaIV	GGNNCC	3 cut(s)	376, 423, 424
NmuCI	GTSAC	2 cut(s)	406, 892
NsiI	ATGCAT	1 cut(s)	317
PctI	GAATGC	1 cut(s)	513
PfeI	GAWTC	1 cut(s)	988
PkrI	GCNGC	7 cut(s)	16, 85, 142, 192, 350, 538, 541
PleI	GAGTC	1 cut(s)	403
PpsI	GAGTC	1 cut(s)	403
PpuMI	RGGWCCY	1 cut(s)	422
Psp5II	RGGWCCY	1 cut(s)	422
Psp6I	CCWGG	1 cut(s)	738
PspFI	CCCAGC	2 cut(s)	59, 580
PspGI	CCWGG	1 cut(s)	738
PspN4I	GGNNCC	3 cut(s)	376, 423, 424
PspPI	GGNCC	3 cut(s)	422, 675, 776
PspPPI	RGGWCCY	1 cut(s)	422
PstI	CTGCAG	1 cut(s)	541
RsaI	GTAC	1 cut(s)	355
RsaNI	GTAC	1 cut(s)	354
SaqAI	TTAA	6 cut(s)	65, 569, 665, 680, 692, 765
SatI	GCNGC	7 cut(s)	15, 84, 141, 191, 349, 537, 540
Sau3AI	GATC	2 cut(s)	179, 198
Sau96I	GGNCC	3 cut(s)	422, 675, 776
SchI	GAGTC	1 cut(s)	403
ScrFI	CCNGG	1 cut(s)	740
SduI	GDGCHC	1 cut(s)	55
SetI	ASST	9 cut(s)	46, 61, 111, 284, 364, 371, 698, 744, 864
SfaNI	GCATC	3 cut(s)	569, 940, 980
SfcI	CTRYAG	2 cut(s)	537, 633
SinI	GGWCC	1 cut(s)	422
SmlI	CTYRAG	1 cut(s)	664
SmoI	CTYRAG	1 cut(s)	664
Sse9I	AATT	4 cut(s)	333, 490, 882, 888
SsiI	CCGC	4 cut(s)	141, 190, 349, 704
SspMI	CTAG	2 cut(s)	359, 1021
StyD4I	CCNGG	1 cut(s)	738
StyI	CCWWGG	3 cut(s)	369, 514, 862
TaaI	ACNGT	1 cut(s)	486
TaqI	TCGA	1 cut(s)	488
TasI	AATT	4 cut(s)	333, 490, 882, 888
TauI	GCSGC	3 cut(s)	143, 193, 351
TfiI	GAWTC	1 cut(s)	988
Tru1I	TTAA	6 cut(s)	65, 569, 665, 680, 692, 765
Tru9I	TTAA	6 cut(s)	65, 569, 665, 680, 692, 765
TscAI	CASTG	3 cut(s)	24, 453, 901
TseFI	GTSAC	2 cut(s)	406, 892
TseI	GCWGC	4 cut(s)	14, 83, 536, 539
Tsp45I	GTSAC	2 cut(s)	406, 892
TspDTI	ATGAA	2 cut(s)	116, 391
TspGWI	ACGGA	1 cut(s)	1000
TspRI	CASTG	3 cut(s)	24, 453, 901
Vha464I	CTTAAG	1 cut(s)	664
VpaK11BI	GGWCC	1 cut(s)	422
XcmI	CCANNNNNNNNNTGG	1 cut(s)	489
XmiI	GTMKAC	2 cut(s)	92, 238
XspI	CTAG	2 cut(s)	359, 1021
Zsp2I	ATGCAT	1 cut(s)	317

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.