Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4D

Orthogroup ID

OG0001686

Physical Location & Seq

Genomic Coordinates Forward (+)

62741982 .. 62751061

Gene Structure 9080 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4DG418700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 999 bp

ATGGTCGTGTACGCCAACGCTCTCTGTACCCTCCTCCTTCTCCCTGATGCCTTGTTCATCTTCCACAGATCATTACCAGACCACCCTCCTCCACTTACATTCTCCATACTCTGCAGATTCTTCTTGCTTGCCTTTCTTGCATGTTCAGGGCAGATATTTGGATATATTGGTATAGACTACAGCTCTCCCACGCTTGGTACCGCCATGCTTAACCTCATTCCTGCATTCACTTTCATACTTGCTCTTATTTTCAGGATGGAAAATGTGTACTGGAGAAGGTTAAATAGTCGAGCCAAAGTTTTGGGGACCATCGTTTCAATTACAGGAGCATTTGTGGTCACATTCTACAAAGGTCCACCGATCATATTGCTAAGTGCACCTGATGAATTTCATTTCTCACCACCACAACATTCAAATTGGATTCTTGGAGGCCTTTTTTTGGCAGCTGATTCTTTCACCAGTTCCCTATGGTACATTCTGCAGGGAATTGTTTCAACTGTTATCCGATACATTTTGATGATCAGCTGGTGCGTGTGGAAGGCTGGAGCTTTTTATTGCTCTATGTTCAAGCCTCTTGGGATCATTTTTGGCGTGATCATGGGTGTCATCTTTTTGGGAGATCCATTCTATTTTGGAAGTTTGGTTGGTGCAGTTATAATTGTCACTGGATTTTATGGAGTGATGTGGGGAAAAGCCGAAGAAGAGAAGCTGGTGGAAAATGGTGGCCGGAAAAGTGAATCATTAGGCCAAAATAAGCGTTTACTGCAATTCCGACAAGGTTATTTGCTCCTCTTGCATTTACACCAATCCCCAGATGAGGAGCTTGCTGACTCCGAATCAGTGCGAGGCGTCGATGACGTTGGTCTGGATTTGGAGGTTGAGGGCAATGAAGTCAGCCGAGTGGTGTTGGTGGCGCGGATGCGAGGATTAAGAATTGGGGCGGCGAGGATTACGAATTGGGGCTTTTCGGTGGCGAAGAAGGACTCAACGTCGTTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0005887 GO:0005938 GO:0007154 GO:0007165 GO:0008150 GO:0009719 GO:0009725 GO:0009733 GO:0009734 GO:0009755 GO:0009987 GO:0010033 GO:0016020 GO:0016021 GO:0023052 GO:0031224 GO:0031226 GO:0032870 GO:0042221 GO:0044424 GO:0044425 GO:0044444 GO:0044459 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0070887 GO:0071310 GO:0071365 GO:0071495 GO:0071944 GO:0099568

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EamA

Protein Analysis

332

Amino Acids

36.9

Weight (kDa)

7.66

Isoelectric Point (pI)

37.23

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001686)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g34870 FvH4_4g34870 FvH4_4g34870 FvH4_4g34870 FvH4_4g34870 FvH4_4g34870 FvH4_4g34870 FvH4_4g34870
malus_domestica	MD13G1088500.v1.1 MD13G1088700.v1.1 MD16G1088800.v1.1 MD16G1088900.v1.1
prunus_persica	Prupe.1G257200_v2.0.a1 Prupe.1G257300_v2.0.a1 Prupe.1G257400_v2.0.a1 Prupe.1G257500_v2.0.a1 Prupe.1G257600_v2.0.a1 Prupe.1G257700_v2.0.a1
pyrus_communis	pycom13g07640 pycom13g07650 pycom16g07610
rosa_chinensis	RchiOBHm_Chr4g0411271 RchiOBHm_Chr4g0444271 RchiOBHm_Chr4g0444291 RchiOBHm_Chr4g0444301
rosa_laevigata	RLG00000005843
rosa_multiflora	Rmu_sc0002841.1_g000015
rosa_roxburghii	Rroxscaffold_5G00384840 Rroxscaffold_5G00384850
rosa_rugosa	Rorug03G0072000 Rorug03G0072100 Rorug04G0351100 Rorug04G0351200 Rorug04G0351300 Rorug04G0351300 Rorug04G0351300 Rorug04G0351300 Rorug07G0109600
rosa_samantha	Rh1BG171600 Rh4AG412000 Rh4BG070500 Rh4BG423500 Rh4CG078800 Rh4DG418700 Rh4DG418800
rosa_wichuraiana	Rw2G039380 Rw4G013770 Rw4G035390 Rw5G040980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	656
Acc65I	GGTACC	1 cut(s)	197
AccB1I	GGYRCC	1 cut(s)	197
AccII	CGCG	1 cut(s)	916
AciI	CCGC	3 cut(s)	201, 916, 941
AclWI	GGATC	2 cut(s)	587, 614
AcoI	YGGCCR	1 cut(s)	724
AcsI	RAATTY	1 cut(s)	386
AcyI	GRCGYC	1 cut(s)	849
AfaI	GTAC	5 cut(s)	11, 28, 199, 269, 473
AfiI	CCNNNNNNNGG	3 cut(s)	194, 439, 817
AgsI	TTSAA	4 cut(s)	318, 414, 495, 568
AhdI	GACNNNNNGTC	1 cut(s)	988
AluBI	AGCT	6 cut(s)	183, 446, 525, 548, 709, 823
AluI	AGCT	6 cut(s)	183, 446, 525, 548, 709, 823
Alw21I	GWGCWC	1 cut(s)	379
Alw44I	GTGCAC	1 cut(s)	375
AlwI	GGATC	2 cut(s)	587, 614
AoxI	GGCC	3 cut(s)	430, 724, 745
ApaLI	GTGCAC	1 cut(s)	375
ApeKI	GCWGC	1 cut(s)	443
ApoI	RAATTY	1 cut(s)	386
Asp700I	GAANNNNTTC	1 cut(s)	490
Asp718I	GGTACC	1 cut(s)	197
AspLEI	GCGC	1 cut(s)	916
AspS9I	GGNCC	2 cut(s)	306, 353
AsuHPI	GGTGA	2 cut(s)	390, 448
AvaII	GGWCC	2 cut(s)	306, 353
BaeGI	GKGCMC	1 cut(s)	379
BanI	GGYRCC	1 cut(s)	197
Bbv12I	GWGCWC	1 cut(s)	379
BbvI	GCAGC	1 cut(s)	455
BccI	CCATC	2 cut(s)	250, 317
BcgI	CGANNNNNNTGC	2 cut(s)	349, 383
BclI	TGATCA	2 cut(s)	519, 594
BfmI	CTRYAG	3 cut(s)	112, 178, 479
BisI	GCNGC	2 cut(s)	444, 942
BlsI	GCNGC	2 cut(s)	445, 943
Bme18I	GGWCC	2 cut(s)	306, 353
BmeRI	GACNNNNNGTC	1 cut(s)	988
BmgT120I	GGNCC	2 cut(s)	306, 353
BmiI	GGNNCC	2 cut(s)	199, 307
BmsI	GCATC	2 cut(s)	37, 909
BoxI	GACNNNNGTC	1 cut(s)	861
BpmI	CTGGAG	2 cut(s)	292, 564
BsaHI	GRCGYC	1 cut(s)	849
BsaXI	ACNNNNNCTCC	2 cut(s)	318, 348
Bsc4I	CCNNNNNNNGG	3 cut(s)	194, 439, 817
Bse1I	ACTGG	3 cut(s)	275, 459, 670
Bse3DI	GCAATG	1 cut(s)	892
BseGI	GGATG	2 cut(s)	261, 924
BseLI	CCNNNNNNNGG	3 cut(s)	194, 439, 817
BseMI	GCAATG	1 cut(s)	892
BseNI	ACTGG	3 cut(s)	275, 459, 670
BseRI	GAGGAG	4 cut(s)	23, 78, 779, 833
BseSI	GKGCMC	1 cut(s)	379
BseXI	GCAGC	1 cut(s)	455
BsgI	GTGCAG	1 cut(s)	669
Bsh1236I	CGCG	1 cut(s)	916
BshFI	GGCC	3 cut(s)	432, 726, 747
BshNI	GGYRCC	1 cut(s)	197
BsiHKAI	GWGCWC	1 cut(s)	379
BsiSI	CCGG	1 cut(s)	727
BslFI	GGGAC	1 cut(s)	319
BslI	CCNNNNNNNGG	3 cut(s)	194, 439, 817
BsmFI	GGGAC	1 cut(s)	319
BsmI	GAATGC	1 cut(s)	224
BsnI	GGCC	3 cut(s)	432, 726, 747
Bsp1286I	GDGCHC	1 cut(s)	379
Bsp143I	GATC	6 cut(s)	68, 360, 519, 579, 594, 619
BspACI	CCGC	3 cut(s)	201, 916, 941
BspANI	GGCC	3 cut(s)	432, 726, 747
BspFNI	CGCG	1 cut(s)	916
BspLI	GGNNCC	2 cut(s)	199, 307
BspMAI	CTGCAG	2 cut(s)	116, 483
BspPI	GGATC	2 cut(s)	587, 614
BspT107I	GGYRCC	1 cut(s)	197
BsrDI	GCAATG	1 cut(s)	892
BsrI	ACTGG	3 cut(s)	275, 459, 670
BssMI	GATC	6 cut(s)	68, 360, 519, 579, 594, 619
BssNI	GRCGYC	1 cut(s)	849
Bst4CI	ACNGT	1 cut(s)	499
Bst6I	CTCTTC	1 cut(s)	696
BstACI	GRCGYC	1 cut(s)	849
BstC8I	GCNNGC	2 cut(s)	129, 825
BstDEI	CTNAG	1 cut(s)	371
BstF5I	GGATG	2 cut(s)	261, 924
BstFNI	CGCG	1 cut(s)	916
BstHHI	GCGC	1 cut(s)	916
BstKTI	GATC	6 cut(s)	71, 363, 522, 582, 597, 622
BstMBI	GATC	6 cut(s)	68, 360, 519, 579, 594, 619
BstMWI	GCNNNNNNNGC	3 cut(s)	137, 763, 793
BstNSI	RCATGY	1 cut(s)	144
BstPAI	GACNNNNGTC	1 cut(s)	861
BstSFI	CTRYAG	3 cut(s)	112, 178, 479
BstSLI	GKGCMC	1 cut(s)	379
BstUI	CGCG	1 cut(s)	916
BstV1I	GCAGC	1 cut(s)	455
BstX2I	RGATCY	1 cut(s)	619
BstXI	CCANNNNNNTGG	1 cut(s)	301
BstYI	RGATCY	1 cut(s)	619
BsuRI	GGCC	3 cut(s)	432, 726, 747
BtsCI	GGATG	2 cut(s)	261, 924
BtsIMutI	CAGTG	2 cut(s)	663, 846
Cac8I	GCNNGC	2 cut(s)	129, 825
CfoI	GCGC	1 cut(s)	916
Cfr13I	GGNCC	2 cut(s)	306, 353
CseI	GACGC	1 cut(s)	838
Csp6I	GTAC	5 cut(s)	10, 27, 198, 268, 472
CviAII	CATG	3 cut(s)	141, 205, 598
CviQI	GTAC	5 cut(s)	10, 27, 198, 268, 472
DdeI	CTNAG	1 cut(s)	371
DpnI	GATC	6 cut(s)	70, 362, 521, 581, 596, 621
DpnII	GATC	6 cut(s)	68, 360, 519, 579, 594, 619
DriI	GACNNNNNGTC	1 cut(s)	988
EaeI	YGGCCR	1 cut(s)	724
Eam1104I	CTCTTC	1 cut(s)	696
Eam1105I	GACNNNNNGTC	1 cut(s)	988
EarI	CTCTTC	1 cut(s)	696
Eco147I	AGGCCT	1 cut(s)	432
Eco47I	GGWCC	2 cut(s)	306, 353
FaeI	CATG	3 cut(s)	144, 208, 601
FaqI	GGGAC	1 cut(s)	319
FatI	CATG	3 cut(s)	140, 204, 597
FbaI	TGATCA	2 cut(s)	519, 594
Fnu4HI	GCNGC	2 cut(s)	444, 942
FokI	GGATG	2 cut(s)	268, 931
Fsp4HI	GCNGC	2 cut(s)	444, 942
GlaI	GCGC	1 cut(s)	915
GluI	GCNGC	2 cut(s)	444, 942
GsuI	CTGGAG	2 cut(s)	292, 564
HaeIII	GGCC	3 cut(s)	432, 726, 747
HapII	CCGG	1 cut(s)	727
HgaI	GACGC	1 cut(s)	838
HhaI	GCGC	1 cut(s)	916
Hin1I	GRCGYC	1 cut(s)	849
Hin1II	CATG	3 cut(s)	144, 208, 601
Hin6I	GCGC	1 cut(s)	914
HinP1I	GCGC	1 cut(s)	914
HinfI	GANTC	7 cut(s)	117, 421, 449, 737, 830, 836, 983
HpaII	CCGG	1 cut(s)	727
HphI	GGTGA	2 cut(s)	390, 448
Hpy166II	GTNNAC	5 cut(s)	10, 268, 356, 377, 761
Hpy188I	TCNGA	3 cut(s)	506, 773, 835
Hpy188III	TCNNGA	2 cut(s)	253, 866
Hpy8I	GTNNAC	5 cut(s)	10, 268, 356, 377, 761
Hpy99I	CGWCG	2 cut(s)	854, 994
HpyAV	CCTTC	4 cut(s)	47, 270, 532, 973
HpyCH4III	ACNGT	1 cut(s)	499
HpyCH4IV	ACGT	2 cut(s)	858, 989
HpyCH4V	TGCA	8 cut(s)	114, 140, 224, 377, 481, 650, 766, 796
HpyF10VI	GCNNNNNNNGC	3 cut(s)	137, 763, 793
HpyF3I	CTNAG	1 cut(s)	371
HpySE526I	ACGT	2 cut(s)	858, 989
Hsp92I	GRCGYC	1 cut(s)	849
Hsp92II	CATG	3 cut(s)	144, 208, 601
HspAI	GCGC	1 cut(s)	914
KpnI	GGTACC	1 cut(s)	201
Ksp22I	TGATCA	2 cut(s)	519, 594
Kzo9I	GATC	6 cut(s)	68, 360, 519, 579, 594, 619
LmnI	GCTCC	4 cut(s)	326, 545, 792, 820
Lsp1109I	GCAGC	1 cut(s)	455
LweI	GCATC	2 cut(s)	37, 909
MaeII	ACGT	2 cut(s)	858, 989
MaeIII	GTNAC	2 cut(s)	337, 661
MalI	GATC	6 cut(s)	70, 362, 521, 581, 596, 621
MboI	GATC	6 cut(s)	68, 360, 519, 579, 594, 619
MboII	GAAGA	5 cut(s)	52, 112, 710, 713, 988
MflI	RGATCY	1 cut(s)	619
MhlI	GDGCHC	1 cut(s)	379
MluCI	AATT	8 cut(s)	318, 386, 415, 486, 657, 767, 933, 955
MlyI	GAGTC	2 cut(s)	824, 977
MmeI	TCCRAC	1 cut(s)	796
MroXI	GAANNNNTTC	1 cut(s)	490
MseI	TTAA	3 cut(s)	210, 281, 929
MslI	CAYNNNNRTG	1 cut(s)	515
MspA1I	CMGCKG	2 cut(s)	446, 525
MspI	CCGG	1 cut(s)	727
Mva1269I	GAATGC	1 cut(s)	224
MvnI	CGCG	1 cut(s)	916
MwoI	GCNNNNNNNGC	3 cut(s)	137, 763, 793
NdeII	GATC	6 cut(s)	68, 360, 519, 579, 594, 619
NlaIII	CATG	3 cut(s)	144, 208, 601
NlaIV	GGNNCC	2 cut(s)	199, 307
NmeAIII	GCCGAG	1 cut(s)	923
NmuCI	GTSAC	2 cut(s)	337, 661
NspI	RCATGY	1 cut(s)	144
PceI	AGGCCT	1 cut(s)	432
PctI	GAATGC	1 cut(s)	224
PdmI	GAANNNNTTC	1 cut(s)	490
PfeI	GAWTC	5 cut(s)	117, 421, 449, 737, 836
PkrI	GCNGC	2 cut(s)	445, 943
PleI	GAGTC	2 cut(s)	824, 977
PpsI	GAGTC	2 cut(s)	824, 977
PshAI	GACNNNNGTC	1 cut(s)	861
PsiI	TTATAA	1 cut(s)	656
PspN4I	GGNNCC	2 cut(s)	199, 307
PspPI	GGNCC	2 cut(s)	306, 353
PstI	CTGCAG	2 cut(s)	116, 483
PsuI	RGATCY	1 cut(s)	619
PvuII	CAGCTG	2 cut(s)	446, 525
RsaI	GTAC	5 cut(s)	11, 28, 199, 269, 473
RsaNI	GTAC	5 cut(s)	10, 27, 198, 268, 472
RseI	CAYNNNNRTG	1 cut(s)	515
SaqAI	TTAA	3 cut(s)	210, 281, 929
SatI	GCNGC	2 cut(s)	444, 942
Sau3AI	GATC	6 cut(s)	68, 360, 519, 579, 594, 619
Sau96I	GGNCC	2 cut(s)	306, 353
SchI	GAGTC	2 cut(s)	824, 977
SduI	GDGCHC	1 cut(s)	379
SfaNI	GCATC	2 cut(s)	37, 909
SfcI	CTRYAG	3 cut(s)	112, 178, 479
SinI	GGWCC	2 cut(s)	306, 353
SmiMI	CAYNNNNRTG	1 cut(s)	515
Sse9I	AATT	8 cut(s)	318, 386, 415, 486, 657, 767, 933, 955
SseBI	AGGCCT	1 cut(s)	432
SsiI	CCGC	3 cut(s)	201, 916, 941
StuI	AGGCCT	1 cut(s)	432
TaaI	ACNGT	1 cut(s)	499
TaiI	ACGT	2 cut(s)	861, 992
TaqI	TCGA	2 cut(s)	289, 852
TasI	AATT	8 cut(s)	318, 386, 415, 486, 657, 767, 933, 955
TatI	WGTACW	1 cut(s)	267
TauI	GCSGC	1 cut(s)	944
TfiI	GAWTC	5 cut(s)	117, 421, 449, 737, 836
Tru1I	TTAA	3 cut(s)	210, 281, 929
Tru9I	TTAA	3 cut(s)	210, 281, 929
TscAI	CASTG	2 cut(s)	670, 846
TseFI	GTSAC	2 cut(s)	337, 661
TseI	GCWGC	1 cut(s)	443
Tsp45I	GTSAC	2 cut(s)	337, 661
TspDTI	ATGAA	5 cut(s)	46, 223, 380, 399, 903
TspRI	CASTG	2 cut(s)	670, 846
VneI	GTGCAC	1 cut(s)	375
VpaK11BI	GGWCC	2 cut(s)	306, 353
XapI	RAATTY	1 cut(s)	386
XceI	RCATGY	1 cut(s)	144
XmnI	GAANNNNTTC	1 cut(s)	490

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.