Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0001686

Physical Location & Seq

Genomic Coordinates Forward (+)

64060297 .. 64070828

Gene Structure 10532 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00384840.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 411 bp

ATGGAAAATGTGTACTGGAAGAGGTCAAGTAGCCAAGCCAAAGTTCTGGGAACCATTGTATCAATCACAGGAGCCTTTGTTGTTACACTCTACAAAGGTCCATCAATCTTACTAGTTCCAAGTTCAGCCACTCAATTCCTCTTCTCACCTCAACATTCAAACTGGCTTGTGGGAGGACTTTTTCTTGTAGCTGACGCTTTTTTTACTTCTCTATGGTACATTCTCCAGGCATCGATCCTTCAGAAGTACCCGGCAGTTGTGTTCGTAGTCTTTTTCCAATGCTTCTTCGCAACCATTCAGTCTGCGGTGTTTACTTTGGTCGCAGTTAAAGGTGCAAATGCTTGGGAGTTGAGACCAGATATGGGGCTGATTGCTATCTTATACACTGTAATAGCGCTTCGTTCTTCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0005887 GO:0005938 GO:0007154 GO:0007165 GO:0008150 GO:0009719 GO:0009725 GO:0009733 GO:0009734 GO:0009755 GO:0009987 GO:0010033 GO:0016020 GO:0016021 GO:0023052 GO:0031224 GO:0031226 GO:0032870 GO:0042221 GO:0044424 GO:0044425 GO:0044444 GO:0044459 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0070887 GO:0071310 GO:0071365 GO:0071495 GO:0071944 GO:0099568

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EamA

Protein Analysis

136

Amino Acids

15.01

Weight (kDa)

9.46

Isoelectric Point (pI)

46.58

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001686)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g34870 FvH4_4g34870 FvH4_4g34870 FvH4_4g34870 FvH4_4g34870 FvH4_4g34870 FvH4_4g34870 FvH4_4g34870
malus_domestica	MD13G1088500.v1.1 MD13G1088700.v1.1 MD16G1088800.v1.1 MD16G1088900.v1.1
prunus_persica	Prupe.1G257200_v2.0.a1 Prupe.1G257300_v2.0.a1 Prupe.1G257400_v2.0.a1 Prupe.1G257500_v2.0.a1 Prupe.1G257600_v2.0.a1 Prupe.1G257700_v2.0.a1
pyrus_communis	pycom13g07640 pycom13g07650 pycom16g07610
rosa_chinensis	RchiOBHm_Chr4g0411271 RchiOBHm_Chr4g0444271 RchiOBHm_Chr4g0444291 RchiOBHm_Chr4g0444301
rosa_laevigata	RLG00000005843
rosa_multiflora	Rmu_sc0002841.1_g000015
rosa_roxburghii	Rroxscaffold_5G00384840 Rroxscaffold_5G00384850
rosa_rugosa	Rorug03G0072000 Rorug03G0072100 Rorug04G0351100 Rorug04G0351200 Rorug04G0351300 Rorug04G0351300 Rorug04G0351300 Rorug04G0351300 Rorug07G0109600
rosa_samantha	Rh1BG171600 Rh4AG412000 Rh4BG070500 Rh4BG423500 Rh4CG078800 Rh4DG418700 Rh4DG418800
rosa_wichuraiana	Rw2G039380 Rw4G013770 Rw4G035390 Rw5G040980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	305
AclWI	GGATC	1 cut(s)	229
AcuI	CTGAAG	1 cut(s)	224
AfaI	GTAC	3 cut(s)	14, 218, 248
AfeI	AGCGCT	1 cut(s)	396
AfiI	CCNNNNNNNGG	1 cut(s)	362
AgsI	TTSAA	1 cut(s)	159
AhlI	ACTAGT	1 cut(s)	112
AjnI	CCWGG	1 cut(s)	225
AjuI	GAANNNNNNNTTGG	2 cut(s)	27, 59
AluBI	AGCT	1 cut(s)	191
AluI	AGCT	1 cut(s)	191
Alw26I	GTCTC	1 cut(s)	346
AlwI	GGATC	1 cut(s)	229
Aor51HI	AGCGCT	1 cut(s)	396
AspLEI	GCGC	1 cut(s)	397
AspS9I	GGNCC	1 cut(s)	98
AsuC2I	CCSGG	1 cut(s)	251
AsuHPI	GGTGA	1 cut(s)	138
AvaII	GGWCC	1 cut(s)	98
BaeI	ACNNNNGTAYC	2 cut(s)	42, 75
BarI	GAAGNNNNNNTAC	1 cut(s)	381
BccI	CCATC	1 cut(s)	109
BciT130I	CCWGG	1 cut(s)	227
BcnI	CCSGG	1 cut(s)	251
BcoDI	GTCTC	1 cut(s)	346
BcuI	ACTAGT	1 cut(s)	112
BfaI	CTAG	1 cut(s)	113
BfoI	RGCGCY	1 cut(s)	398
Bme1390I	CCNGG	2 cut(s)	227, 251
Bme18I	GGWCC	1 cut(s)	98
BmgT120I	GGNCC	1 cut(s)	98
BmiI	GGNNCC	2 cut(s)	52, 73
BmrFI	CCNGG	2 cut(s)	227, 251
BmsI	GCATC	1 cut(s)	239
BpmI	CTGGAG	1 cut(s)	209
BpuMI	CCSGG	1 cut(s)	251
Bsa29I	ATCGAT	1 cut(s)	233
BsaBI	GATNNNNATC	1 cut(s)	374
BsaI	GGTCTC	1 cut(s)	346
BsaXI	ACNNNNNCTCC	2 cut(s)	63, 93
Bsc4I	CCNNNNNNNGG	1 cut(s)	362
Bse1I	ACTGG	2 cut(s)	20, 167
Bse8I	GATNNNNATC	1 cut(s)	374
BseBI	CCWGG	1 cut(s)	227
BseCI	ATCGAT	1 cut(s)	233
BseJI	GATNNNNATC	1 cut(s)	374
BseLI	CCNNNNNNNGG	1 cut(s)	362
BseNI	ACTGG	2 cut(s)	20, 167
BshVI	ATCGAT	1 cut(s)	233
BsiSI	CCGG	1 cut(s)	251
BslI	CCNNNNNNNGG	1 cut(s)	362
BsmAI	GTCTC	1 cut(s)	346
Bso31I	GGTCTC	1 cut(s)	346
Bsp143I	GATC	1 cut(s)	234
BspACI	CCGC	1 cut(s)	305
BspDI	ATCGAT	1 cut(s)	233
BspLI	GGNNCC	2 cut(s)	52, 73
BspPI	GGATC	1 cut(s)	229
BspTNI	GGTCTC	1 cut(s)	346
BsrI	ACTGG	2 cut(s)	20, 167
BssMI	GATC	1 cut(s)	234
Bst2UI	CCWGG	1 cut(s)	227
Bst4CI	ACNGT	1 cut(s)	388
Bst6I	CTCTTC	2 cut(s)	14, 146
BstH2I	RGCGCY	1 cut(s)	398
BstHHI	GCGC	1 cut(s)	397
BstKTI	GATC	1 cut(s)	237
BstMAI	GTCTC	1 cut(s)	346
BstMBI	GATC	1 cut(s)	234
BstNI	CCWGG	1 cut(s)	227
BstSCI	CCNGG	2 cut(s)	225, 249
BstXI	CCANNNNNNTGG	1 cut(s)	46
Bsu15I	ATCGAT	1 cut(s)	233
BsuTUI	ATCGAT	1 cut(s)	233
BtsIMutI	CAGTG	1 cut(s)	384
CfoI	GCGC	1 cut(s)	397
Cfr13I	GGNCC	1 cut(s)	98
ClaI	ATCGAT	1 cut(s)	233
CseI	GACGC	1 cut(s)	203
Csp6I	GTAC	3 cut(s)	13, 217, 247
CviJI	RGCY	7 cut(s)	33, 38, 74, 128, 166, 191, 367
CviKI_1	RGCY	7 cut(s)	33, 38, 74, 128, 166, 191, 367
CviQI	GTAC	3 cut(s)	13, 217, 247
DpnI	GATC	1 cut(s)	236
DpnII	GATC	1 cut(s)	234
Eam1104I	CTCTTC	2 cut(s)	14, 146
EarI	CTCTTC	2 cut(s)	14, 146
Eco31I	GGTCTC	1 cut(s)	346
Eco47I	GGWCC	1 cut(s)	98
Eco47III	AGCGCT	1 cut(s)	396
Eco57I	CTGAAG	1 cut(s)	224
EcoRII	CCWGG	1 cut(s)	225
FaiI	YATR	3 cut(s)	214, 362, 382
FspBI	CTAG	1 cut(s)	113
GlaI	GCGC	1 cut(s)	396
GsuI	CTGGAG	1 cut(s)	209
HaeII	RGCGCY	1 cut(s)	398
HapII	CCGG	1 cut(s)	251
HgaI	GACGC	1 cut(s)	203
HhaI	GCGC	1 cut(s)	397
Hin6I	GCGC	1 cut(s)	395
HinP1I	GCGC	1 cut(s)	395
HpaII	CCGG	1 cut(s)	251
HphI	GGTGA	1 cut(s)	138
Hpy166II	GTNNAC	2 cut(s)	13, 312
Hpy188I	TCNGA	1 cut(s)	243
Hpy8I	GTNNAC	2 cut(s)	13, 312
HpyAV	CCTTC	1 cut(s)	248
HpyCH4III	ACNGT	1 cut(s)	388
HpyCH4V	TGCA	1 cut(s)	335
HspAI	GCGC	1 cut(s)	395
Kzo9I	GATC	1 cut(s)	234
LmnI	GCTCC	1 cut(s)	71
LpnPI	CCDG	7 cut(s)	32, 54, 148, 212, 239, 264, 369
LweI	GCATC	1 cut(s)	239
MaeI	CTAG	1 cut(s)	113
MaeIII	GTNAC	1 cut(s)	82
MalI	GATC	1 cut(s)	236
MboI	GATC	1 cut(s)	234
MboII	GAAGA	4 cut(s)	31, 133, 277, 396
MluCI	AATT	1 cut(s)	134
MnlI	CCTC	4 cut(s)	15, 149, 159, 167
MseI	TTAA	2 cut(s)	327, 409
MspI	CCGG	1 cut(s)	251
MspR9I	CCNGG	2 cut(s)	227, 251
MvaI	CCWGG	1 cut(s)	227
NciI	CCSGG	1 cut(s)	251
NdeII	GATC	1 cut(s)	234
NlaIV	GGNNCC	2 cut(s)	52, 73
Psp6I	CCWGG	1 cut(s)	225
PspGI	CCWGG	1 cut(s)	225
PspN4I	GGNNCC	2 cut(s)	52, 73
PspPI	GGNCC	1 cut(s)	98
RsaI	GTAC	3 cut(s)	14, 218, 248
RsaNI	GTAC	3 cut(s)	13, 217, 247
SaqAI	TTAA	2 cut(s)	327, 409
Sau3AI	GATC	1 cut(s)	234
Sau96I	GGNCC	1 cut(s)	98
ScrFI	CCNGG	2 cut(s)	227, 251
SetI	ASST	5 cut(s)	26, 100, 151, 193, 334
SfaNI	GCATC	1 cut(s)	239
SinI	GGWCC	1 cut(s)	98
SpeI	ACTAGT	1 cut(s)	112
Sse9I	AATT	1 cut(s)	134
SsiI	CCGC	1 cut(s)	305
SspMI	CTAG	1 cut(s)	113
StyD4I	CCNGG	2 cut(s)	225, 249
TaaI	ACNGT	1 cut(s)	388
TaqI	TCGA	1 cut(s)	233
TasI	AATT	1 cut(s)	134
TatI	WGTACW	1 cut(s)	12
Tru1I	TTAA	2 cut(s)	327, 409
Tru9I	TTAA	2 cut(s)	327, 409
TscAI	CASTG	1 cut(s)	391
TspRI	CASTG	1 cut(s)	391
VpaK11BI	GGWCC	1 cut(s)	98
XspI	CTAG	1 cut(s)	113

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.