Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002841.1

Orthogroup ID

OG0001686

Physical Location & Seq

Genomic Coordinates Reverse (-)

79279 .. 82306

Gene Structure 3028 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002841.1_g000015.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1383 bp

atggtgttggattggggtgcttggcttgctgctaatacccattgctccaagagatgctatggtgataaccaatggtgtattgtcttcttctttacatgttggtatatttggaagtggaggaataaaggggtgtttgaggaaaacttccaatggccactgcttcccttgaagattatcacttacgctgttactaaatggtctttagcccaagccaaaccacctaattcaaatgtgagctacgttcgaaccaagtccacttgttgtctcaaataccgaaactctgcagctctggaatttcaaaggatccgaagacagaaacagattatggcgaagattgcagcactaccaatagtggggatggtcttagctgagtgttcccaagctgggttaatgatagtaagcaaagcagccatgtctactgggatgaacaacctcatctttgtctgctactccaacgctcttgccgcttttgttcttctcccaacttctctattctttcacagatcaacagaccggcctccgatcactttctctattctctgttggttcttcttgcttggtctacttgggtgtatagctcagttgattgggtatgctgggattaattacagctctcctactcttggcacggctatgctcaaccttattccagctttcacttttgtacttgcagttatattcagaatggaaaaaattgatgggagaagctgcagtaccctagctaaaaccttgggaacaatagtttcaatatcaggggctttcattgtgactctttacaagggacccccacttctgatgacagcctcagttgatttattgtctcacaatcaacttttcttgccacagtcgaattgggtcattggaggaatgctccttgggtttcattgtgtggtggctgcagcatttcttatcatacaggcttcagtattaaaaaaatacccagcagagctcattatagtcttttactattgcttctttgtggctattcaatctgtagtggtgttgtggtttgtggaaagagacttaagtgcttgggccttgaaccctaagttaaggttgtttgcggttctatactcaggagtttttggctcagcgttccaggttggtgtatctacatggtgtcttaacaggacagggccagtttttgtatctatgttcaagcctttagggattgtagttgcagttgccattggtgttatcttcttgggggatacattctaccttggaagtttgataggagcaattgtaattgtcactggattttactctgtgatatggggcaaagccaatgaggagaagatggatgatgatgcaggggcaaggagtttggcatcaaagaaacaacggattccattactgcaaaacattattgaagaaatctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0005887 GO:0005938 GO:0006810 GO:0007154 GO:0007165 GO:0008150 GO:0009719 GO:0009725 GO:0009733 GO:0009734 GO:0009755 GO:0009987 GO:0010033 GO:0016020 GO:0016021 GO:0022857 GO:0023052 GO:0031224 GO:0031226 GO:0032870 GO:0042221 GO:0044424 GO:0044425 GO:0044444 GO:0044459 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0051716 GO:0055085 GO:0065007 GO:0070887 GO:0071310 GO:0071365 GO:0071495 GO:0071944 GO:0099568

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EamA

Protein Analysis

460

Amino Acids

51.11

Weight (kDa)

9.33

Isoelectric Point (pI)

31.95

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001686)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g34870 FvH4_4g34870 FvH4_4g34870 FvH4_4g34870 FvH4_4g34870 FvH4_4g34870 FvH4_4g34870 FvH4_4g34870
malus_domestica	MD13G1088500.v1.1 MD13G1088700.v1.1 MD16G1088800.v1.1 MD16G1088900.v1.1
prunus_persica	Prupe.1G257200_v2.0.a1 Prupe.1G257300_v2.0.a1 Prupe.1G257400_v2.0.a1 Prupe.1G257500_v2.0.a1 Prupe.1G257600_v2.0.a1 Prupe.1G257700_v2.0.a1
pyrus_communis	pycom13g07640 pycom13g07650 pycom16g07610
rosa_chinensis	RchiOBHm_Chr4g0411271 RchiOBHm_Chr4g0444271 RchiOBHm_Chr4g0444291 RchiOBHm_Chr4g0444301
rosa_laevigata	RLG00000005843
rosa_multiflora	Rmu_sc0002841.1_g000015
rosa_roxburghii	Rroxscaffold_5G00384840 Rroxscaffold_5G00384850
rosa_rugosa	Rorug03G0072000 Rorug03G0072100 Rorug04G0351100 Rorug04G0351200 Rorug04G0351300 Rorug04G0351300 Rorug04G0351300 Rorug04G0351300 Rorug07G0109600
rosa_samantha	Rh1BG171600 Rh4AG412000 Rh4BG070500 Rh4BG423500 Rh4CG078800 Rh4DG418700 Rh4DG418800
rosa_wichuraiana	Rw2G039380 Rw4G013770 Rw4G035390 Rw5G040980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	416, 562
AciI	CCGC	2 cut(s)	465, 1064
AclWI	GGATC	2 cut(s)	298, 311
AcoI	YGGCCR	1 cut(s)	152
AcsI	RAATTY	1 cut(s)	293
AcuI	CTGAAG	1 cut(s)	906
AfaI	GTAC	2 cut(s)	666, 715
AfiI	CCNNNNNNNGG	3 cut(s)	353, 384, 623
AflII	CTTAAG	1 cut(s)	1024
AflIII	ACRYGT	1 cut(s)	95
AgsI	TTSAA	8 cut(s)	169, 228, 299, 747, 989, 1042, 1159, 1373
AjnI	CCWGG	1 cut(s)	1098
Alw21I	GWGCWC	1 cut(s)	951
Alw26I	GTCTC	3 cut(s)	269, 825, 1014
AlwI	GGATC	2 cut(s)	298, 311
AoxI	GGCC	4 cut(s)	152, 515, 1035, 1136
ApeKI	GCWGC	7 cut(s)	29, 284, 338, 407, 708, 896, 899
ApoI	RAATTY	1 cut(s)	293
AseI	ATTAAT	1 cut(s)	603
AspS9I	GGNCC	3 cut(s)	782, 1035, 1136
AsuHPI	GGTGA	1 cut(s)	74
AsuII	TTCGAA	1 cut(s)	244
AvaII	GGWCC	1 cut(s)	782
BalI	TGGCCA	1 cut(s)	154
BamHI	GGATCC	1 cut(s)	303
BanII	GRGCYC	1 cut(s)	951
BarI	GAAGNNNNNNTAC	2 cut(s)	697, 729
BbsI	GAAGAC	2 cut(s)	76, 316
Bbv12I	GWGCWC	1 cut(s)	951
BbvI	GCAGC	7 cut(s)	16, 296, 350, 419, 695, 883, 911
BccI	CCATC	3 cut(s)	352, 692, 1294
BceAI	ACGGC	1 cut(s)	645
BciT130I	CCWGG	1 cut(s)	1100
BciVI	GTATCC	1 cut(s)	1204
BcoDI	GTCTC	3 cut(s)	269, 825, 1014
BfaI	CTAG	2 cut(s)	719, 1381
BfmI	CTRYAG	4 cut(s)	282, 709, 897, 993
BfrI	CTTAAG	1 cut(s)	1024
BfuI	GTATCC	1 cut(s)	1204
BisI	GCNGC	8 cut(s)	30, 285, 339, 408, 465, 709, 897, 900
BlpI	GCTNAGC	1 cut(s)	1090
BlsI	GCNGC	8 cut(s)	31, 286, 340, 409, 466, 710, 898, 901
Bme1390I	CCNGG	1 cut(s)	1100
Bme18I	GGWCC	1 cut(s)	782
BmgT120I	GGNCC	3 cut(s)	782, 1035, 1136
BmiI	GGNNCC	3 cut(s)	305, 783, 784
BmrFI	CCNGG	1 cut(s)	1100
BmrI	ACTGGG	1 cut(s)	429
BmsI	GCATC	3 cut(s)	44, 1300, 1340
BmuI	ACTGGG	1 cut(s)	429
BpiI	GAAGAC	2 cut(s)	76, 316
BplI	GAGNNNNNCTC	2 cut(s)	855, 887
Bpu1102I	GCTNAGC	1 cut(s)	1090
Bpu14I	TTCGAA	1 cut(s)	244
BsaJI	CCNNGG	3 cut(s)	729, 874, 1222
BsaXI	ACNNNNNCTCC	2 cut(s)	1230, 1260
Bsc4I	CCNNNNNNNGG	3 cut(s)	353, 384, 623
Bse118I	RCCGGY	1 cut(s)	513
Bse1I	ACTGG	3 cut(s)	424, 1139, 1261
Bse3DI	GCAATG	1 cut(s)	40
BseBI	CCWGG	1 cut(s)	1100
BseDI	CCNNGG	3 cut(s)	729, 874, 1222
BseGI	GGATG	3 cut(s)	363, 429, 1309
BseLI	CCNNNNNNNGG	3 cut(s)	353, 384, 623
BseMI	GCAATG	1 cut(s)	40
BseMII	CTCAG	5 cut(s)	360, 593, 819, 1089, 1104
BseNI	ACTGG	3 cut(s)	424, 1139, 1261
BseRI	GAGGAG	1 cut(s)	1307
BseXI	GCAGC	7 cut(s)	16, 296, 350, 419, 695, 883, 911
BseYI	CCCAGC	3 cut(s)	383, 596, 940
BshFI	GGCC	4 cut(s)	154, 517, 1037, 1138
BsiHKAI	GWGCWC	1 cut(s)	951
BsiSI	CCGG	1 cut(s)	514
BslFI	GGGAC	1 cut(s)	795
BslI	CCNNNNNNNGG	3 cut(s)	353, 384, 623
BsmAI	GTCTC	3 cut(s)	269, 825, 1014
BsmFI	GGGAC	1 cut(s)	795
BsmI	GAATGC	1 cut(s)	873
BsnI	GGCC	4 cut(s)	154, 517, 1037, 1138
Bsp119I	TTCGAA	1 cut(s)	244
Bsp1286I	GDGCHC	1 cut(s)	951
Bsp143I	GATC	3 cut(s)	303, 503, 522
Bsp1720I	GCTNAGC	1 cut(s)	1090
BspACI	CCGC	2 cut(s)	465, 1064
BspANI	GGCC	4 cut(s)	154, 517, 1037, 1138
BspCNI	CTCAG	5 cut(s)	361, 592, 818, 1088, 1103
BspLI	GGNNCC	3 cut(s)	305, 783, 784
BspMAI	CTGCAG	3 cut(s)	286, 713, 901
BspPI	GGATC	2 cut(s)	298, 311
BspT104I	TTCGAA	1 cut(s)	244
BspTI	CTTAAG	1 cut(s)	1024
BsrDI	GCAATG	1 cut(s)	40
BsrFI	RCCGGY	1 cut(s)	513
BsrI	ACTGG	3 cut(s)	424, 1139, 1261
BssAI	RCCGGY	1 cut(s)	513
BssECI	CCNNGG	3 cut(s)	729, 874, 1222
BssMI	GATC	3 cut(s)	303, 503, 522
BssT1I	CCWWGG	3 cut(s)	729, 874, 1222
Bst2UI	CCWGG	1 cut(s)	1100
Bst4CI	ACNGT	1 cut(s)	846
BstAFI	CTTAAG	1 cut(s)	1024
BstBI	TTCGAA	1 cut(s)	244
BstC8I	GCNNGC	1 cut(s)	27
BstDEI	CTNAG	7 cut(s)	364, 369, 579, 805, 1047, 1075, 1090
BstF5I	GGATG	3 cut(s)	363, 429, 1309
BstKTI	GATC	3 cut(s)	306, 506, 525
BstMAI	GTCTC	3 cut(s)	269, 825, 1014
BstMBI	GATC	3 cut(s)	303, 503, 522
BstMWI	GCNNNNNNNGC	3 cut(s)	26, 335, 464
BstNI	CCWGG	1 cut(s)	1100
BstNSI	RCATGY	1 cut(s)	99
BstSCI	CCNGG	1 cut(s)	1098
BstSFI	CTRYAG	4 cut(s)	282, 709, 897, 993
BstV1I	GCAGC	7 cut(s)	16, 296, 350, 419, 695, 883, 911
BstV2I	GAAGAC	2 cut(s)	76, 316
BstX2I	RGATCY	1 cut(s)	303
BstYI	RGATCY	1 cut(s)	303
BsuI	GTATCC	1 cut(s)	1204
BsuRI	GGCC	4 cut(s)	154, 517, 1037, 1138
BtsCI	GGATG	3 cut(s)	363, 429, 1309
BtsI	GCAGTG	1 cut(s)	155
BtsIMutI	CAGTG	2 cut(s)	155, 1254
Cac8I	GCNNGC	1 cut(s)	27
Cfr10I	RCCGGY	1 cut(s)	513
Cfr13I	GGNCC	3 cut(s)	782, 1035, 1136
Csp6I	GTAC	2 cut(s)	665, 714
CviAII	CATG	3 cut(s)	96, 412, 1116
CviQI	GTAC	2 cut(s)	665, 714
DdeI	CTNAG	7 cut(s)	364, 369, 579, 805, 1047, 1075, 1090
DpnI	GATC	3 cut(s)	305, 505, 524
DpnII	GATC	3 cut(s)	303, 503, 522
EaeI	YGGCCR	1 cut(s)	152
Ecl136II	GAGCTC	1 cut(s)	949
Eco130I	CCWWGG	3 cut(s)	729, 874, 1222
Eco24I	GRGCYC	1 cut(s)	951
Eco47I	GGWCC	1 cut(s)	782
Eco53kI	GAGCTC	1 cut(s)	949
Eco57I	CTGAAG	1 cut(s)	906
EcoICRI	GAGCTC	1 cut(s)	949
EcoO109I	RGGNCCY	1 cut(s)	782
EcoRII	CCWGG	1 cut(s)	1098
EcoT14I	CCWWGG	3 cut(s)	729, 874, 1222
EcoT38I	GRGCYC	1 cut(s)	951
ErhI	CCWWGG	3 cut(s)	729, 874, 1222
FaeI	CATG	3 cut(s)	99, 415, 1119
FaqI	GGGAC	1 cut(s)	795
FatI	CATG	3 cut(s)	95, 411, 1115
FblI	GTMKAC	2 cut(s)	416, 562
Fnu4HI	GCNGC	8 cut(s)	30, 285, 339, 408, 465, 709, 897, 900
FokI	GGATG	3 cut(s)	370, 436, 1316
FriOI	GRGCYC	1 cut(s)	951
Fsp4HI	GCNGC	8 cut(s)	30, 285, 339, 408, 465, 709, 897, 900
FspBI	CTAG	2 cut(s)	719, 1381
GluI	GCNGC	8 cut(s)	30, 285, 339, 408, 465, 709, 897, 900
GsaI	CCCAGC	3 cut(s)	387, 600, 944
HaeIII	GGCC	4 cut(s)	154, 517, 1037, 1138
HapII	CCGG	1 cut(s)	514
Hin1II	CATG	3 cut(s)	99, 415, 1119
HinfI	GANTC	2 cut(s)	769, 1348
HpaII	CCGG	1 cut(s)	514
HphI	GGTGA	1 cut(s)	74
Hpy166II	GTNNAC	3 cut(s)	255, 417, 563
Hpy188I	TCNGA	4 cut(s)	308, 522, 683, 795
Hpy188III	TCNNGA	2 cut(s)	290, 1077
Hpy8I	GTNNAC	3 cut(s)	255, 417, 563
HpyCH4III	ACNGT	1 cut(s)	846
HpyCH4IV	ACGT	1 cut(s)	240
HpyCH4V	TGCA	8 cut(s)	284, 338, 671, 711, 899, 1181, 1313, 1360
HpyF10VI	GCNNNNNNNGC	3 cut(s)	26, 335, 464
HpyF3I	CTNAG	7 cut(s)	364, 369, 579, 805, 1047, 1075, 1090
HpySE526I	ACGT	1 cut(s)	240
Hsp92II	CATG	3 cut(s)	99, 415, 1119
KflI	GGGWCCC	1 cut(s)	782
Kzo9I	GATC	3 cut(s)	303, 503, 522
LmnI	GCTCC	3 cut(s)	50, 876, 1238
Lsp1109I	GCAGC	7 cut(s)	16, 296, 350, 419, 695, 883, 911
LweI	GCATC	3 cut(s)	44, 1300, 1340
MaeI	CTAG	2 cut(s)	719, 1381
MaeII	ACGT	1 cut(s)	240
MaeIII	GTNAC	3 cut(s)	187, 766, 1252
MalI	GATC	3 cut(s)	305, 505, 524
MboI	GATC	3 cut(s)	303, 503, 522
MboII	GAAGA	9 cut(s)	76, 79, 181, 321, 343, 467, 541, 1192, 1309
MfeI	CAATTG	1 cut(s)	1242
MflI	RGATCY	1 cut(s)	303
MhlI	GDGCHC	1 cut(s)	951
MlsI	TGGCCA	1 cut(s)	154
MluCI	AATT	7 cut(s)	223, 293, 604, 693, 850, 1242, 1248
MluNI	TGGCCA	1 cut(s)	154
MlyI	GAGTC	1 cut(s)	763
MmeI	TCCRAC	1 cut(s)	477
MnlI	CCTC	7 cut(s)	111, 130, 443, 528, 814, 857, 1285
Mox20I	TGGCCA	1 cut(s)	154
MscI	TGGCCA	1 cut(s)	154
MseI	TTAA	6 cut(s)	389, 603, 929, 1025, 1052, 1125
MslI	CAYNNNNRTG	1 cut(s)	632
Msp20I	TGGCCA	1 cut(s)	154
MspCI	CTTAAG	1 cut(s)	1024
MspI	CCGG	1 cut(s)	514
MspR9I	CCNGG	1 cut(s)	1100
MunI	CAATTG	1 cut(s)	1242
Mva1269I	GAATGC	1 cut(s)	873
MvaI	CCWGG	1 cut(s)	1100
MwoI	GCNNNNNNNGC	3 cut(s)	26, 335, 464
NdeII	GATC	3 cut(s)	303, 503, 522
NlaIII	CATG	3 cut(s)	99, 415, 1119
NlaIV	GGNNCC	3 cut(s)	305, 783, 784
NmuCI	GTSAC	2 cut(s)	766, 1252
NspI	RCATGY	1 cut(s)	99
NspV	TTCGAA	1 cut(s)	244
PciI	ACATGT	1 cut(s)	95
PctI	GAATGC	1 cut(s)	873
PfeI	GAWTC	1 cut(s)	1348
PkrI	GCNGC	8 cut(s)	31, 286, 340, 409, 466, 710, 898, 901
PleI	GAGTC	1 cut(s)	763
PpsI	GAGTC	1 cut(s)	763
PpuMI	RGGWCCY	1 cut(s)	782
PscI	ACATGT	1 cut(s)	95
PshBI	ATTAAT	1 cut(s)	603
Psp124BI	GAGCTC	1 cut(s)	951
Psp5II	RGGWCCY	1 cut(s)	782
Psp6I	CCWGG	1 cut(s)	1098
PspFI	CCCAGC	3 cut(s)	383, 596, 940
PspGI	CCWGG	1 cut(s)	1098
PspN4I	GGNNCC	3 cut(s)	305, 783, 784
PspPI	GGNCC	3 cut(s)	782, 1035, 1136
PspPPI	RGGWCCY	1 cut(s)	782
PstI	CTGCAG	3 cut(s)	286, 713, 901
PsuI	RGATCY	1 cut(s)	303
RsaI	GTAC	2 cut(s)	666, 715
RsaNI	GTAC	2 cut(s)	665, 714
RseI	CAYNNNNRTG	1 cut(s)	632
SacI	GAGCTC	1 cut(s)	951
SaqAI	TTAA	6 cut(s)	389, 603, 929, 1025, 1052, 1125
SatI	GCNGC	8 cut(s)	30, 285, 339, 408, 465, 709, 897, 900
Sau3AI	GATC	3 cut(s)	303, 503, 522
Sau96I	GGNCC	3 cut(s)	782, 1035, 1136
SchI	GAGTC	1 cut(s)	763
ScrFI	CCNGG	1 cut(s)	1100
SduI	GDGCHC	1 cut(s)	951
SfaNI	GCATC	3 cut(s)	44, 1300, 1340
SfcI	CTRYAG	4 cut(s)	282, 709, 897, 993
SfuI	TTCGAA	1 cut(s)	244
SinI	GGWCC	1 cut(s)	782
SmiMI	CAYNNNNRTG	1 cut(s)	632
SmlI	CTYRAG	1 cut(s)	1024
SmoI	CTYRAG	1 cut(s)	1024
Sse9I	AATT	7 cut(s)	223, 293, 604, 693, 850, 1242, 1248
SsiI	CCGC	2 cut(s)	465, 1064
SspMI	CTAG	2 cut(s)	719, 1381
SstI	GAGCTC	1 cut(s)	951
StyD4I	CCNGG	1 cut(s)	1098
StyI	CCWWGG	3 cut(s)	729, 874, 1222
TaaI	ACNGT	1 cut(s)	846
TaiI	ACGT	1 cut(s)	243
TaqI	TCGA	2 cut(s)	244, 848
TasI	AATT	7 cut(s)	223, 293, 604, 693, 850, 1242, 1248
TatI	WGTACW	1 cut(s)	664
TauI	GCSGC	1 cut(s)	467
TfiI	GAWTC	1 cut(s)	1348
Tru1I	TTAA	6 cut(s)	389, 603, 929, 1025, 1052, 1125
Tru9I	TTAA	6 cut(s)	389, 603, 929, 1025, 1052, 1125
TscAI	CASTG	2 cut(s)	162, 1261
TseFI	GTSAC	2 cut(s)	766, 1252
TseI	GCWGC	7 cut(s)	29, 284, 338, 407, 708, 896, 899
Tsp45I	GTSAC	2 cut(s)	766, 1252
TspDTI	ATGAA	3 cut(s)	440, 751, 872
TspGWI	ACGGA	1 cut(s)	1360
TspRI	CASTG	2 cut(s)	162, 1261
Vha464I	CTTAAG	1 cut(s)	1024
VpaK11BI	GGWCC	1 cut(s)	782
VspI	ATTAAT	1 cut(s)	603
XapI	RAATTY	1 cut(s)	293
XceI	RCATGY	1 cut(s)	99
XcmI	CCANNNNNNNNNTGG	1 cut(s)	849
XmiI	GTMKAC	2 cut(s)	416, 562
XspI	CTAG	2 cut(s)	719, 1381

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.