Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001686

Physical Location & Seq

Genomic Coordinates Forward (+)

65083650 .. 65089302

Gene Structure 5653 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ41197

Sequence Viewer

CDS Protein Promoter (2k)

Length: 363 bp

ATGTCTGCGGTGTTTACTTTAATTGCTATCAAAGATGCAAATGCTTGGGCGCTAAGACAGGACATGGGGCTCATTGCTATTTTATACACCGGAATTGTAGCAACAGTTCTTCGTTACAGTTTAGTGACATGGTGGGTGTGGAAGGCTGGAGCTGTTTATTGCTCTATGTTCAAACCGCTTGCGATAATTTTTGGTGTCATCATGTGTTTCATCTTTTGGGAGATTCAGTCTACCTCGGGAGTTATAATTGTTACTGGGTTTTACGCTATGATGTGGGGAAAGGCCAGAGAATTAGAGAAGCTAGATGATGAAGATCCCTCTAGTGTTGATCATAACAAGCTCCCTCTACTACAAAACAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0005887 GO:0005938 GO:0007154 GO:0007165 GO:0008150 GO:0009719 GO:0009725 GO:0009733 GO:0009734 GO:0009755 GO:0009987 GO:0010033 GO:0016020 GO:0016021 GO:0023052 GO:0031224 GO:0031226 GO:0032870 GO:0042221 GO:0044424 GO:0044425 GO:0044444 GO:0044459 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0070887 GO:0071310 GO:0071365 GO:0071495 GO:0071944 GO:0099568

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EamA

Protein Analysis

120

Amino Acids

13.57

Weight (kDa)

6.54

Isoelectric Point (pI)

28.71

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001686)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g34870 FvH4_4g34870 FvH4_4g34870 FvH4_4g34870 FvH4_4g34870 FvH4_4g34870 FvH4_4g34870 FvH4_4g34870
malus_domestica	MD13G1088500.v1.1 MD13G1088700.v1.1 MD16G1088800.v1.1 MD16G1088900.v1.1
prunus_persica	Prupe.1G257200_v2.0.a1 Prupe.1G257300_v2.0.a1 Prupe.1G257400_v2.0.a1 Prupe.1G257500_v2.0.a1 Prupe.1G257600_v2.0.a1 Prupe.1G257700_v2.0.a1
pyrus_communis	pycom13g07640 pycom13g07650 pycom16g07610
rosa_chinensis	RchiOBHm_Chr4g0411271 RchiOBHm_Chr4g0444271 RchiOBHm_Chr4g0444291 RchiOBHm_Chr4g0444301
rosa_laevigata	RLG00000005843
rosa_multiflora	Rmu_sc0002841.1_g000015
rosa_roxburghii	Rroxscaffold_5G00384840 Rroxscaffold_5G00384850
rosa_rugosa	Rorug03G0072000 Rorug03G0072100 Rorug04G0351100 Rorug04G0351200 Rorug04G0351300 Rorug04G0351300 Rorug04G0351300 Rorug04G0351300 Rorug07G0109600
rosa_samantha	Rh1BG171600 Rh4AG412000 Rh4BG070500 Rh4BG423500 Rh4CG078800 Rh4DG418700 Rh4DG418800
rosa_wichuraiana	Rw2G039380 Rw4G013770 Rw4G035390 Rw5G040980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	245
AccI	GTMKAC	1 cut(s)	230
AciI	CCGC	2 cut(s)	8, 176
AclWI	GGATC	1 cut(s)	308
AgsI	TTSAA	1 cut(s)	172
AluBI	AGCT	3 cut(s)	152, 301, 340
AluI	AGCT	3 cut(s)	152, 301, 340
AlwI	GGATC	1 cut(s)	308
Ama87I	CYCGRG	1 cut(s)	235
AoxI	GGCC	1 cut(s)	282
AspLEI	GCGC	1 cut(s)	52
AvaI	CYCGRG	1 cut(s)	235
BanII	GRGCYC	1 cut(s)	72
BclI	TGATCA	1 cut(s)	328
BfaI	CTAG	2 cut(s)	302, 321
BfoI	RGCGCY	1 cut(s)	53
BmeT110I	CYCGRG	1 cut(s)	235
BmrI	ACTGGG	1 cut(s)	264
BmsI	GCATC	1 cut(s)	25
BmuI	ACTGGG	1 cut(s)	264
BpmI	CTGGAG	1 cut(s)	168
BsaBI	GATNNNNATC	1 cut(s)	312
BsaJI	CCNNGG	1 cut(s)	234
BsaWI	WCCGGW	1 cut(s)	89
BsaXI	ACNNNNNCTCC	2 cut(s)	212, 242
Bse1I	ACTGG	1 cut(s)	259
Bse3DI	GCAATG	1 cut(s)	72
Bse8I	GATNNNNATC	1 cut(s)	312
BseDI	CCNNGG	1 cut(s)	234
BseJI	GATNNNNATC	1 cut(s)	312
BseMI	GCAATG	1 cut(s)	72
BseNI	ACTGG	1 cut(s)	259
BshFI	GGCC	1 cut(s)	284
BsiHKCI	CYCGRG	1 cut(s)	235
BsiSI	CCGG	1 cut(s)	90
BsnI	GGCC	1 cut(s)	284
BsoBI	CYCGRG	1 cut(s)	235
Bsp1286I	GDGCHC	1 cut(s)	72
Bsp143I	GATC	2 cut(s)	313, 328
BspACI	CCGC	2 cut(s)	8, 176
BspANI	GGCC	1 cut(s)	284
BspPI	GGATC	1 cut(s)	308
BsrDI	GCAATG	1 cut(s)	72
BsrI	ACTGG	1 cut(s)	259
BssECI	CCNNGG	1 cut(s)	234
BssMI	GATC	2 cut(s)	313, 328
Bst4CI	ACNGT	2 cut(s)	106, 119
BstC8I	GCNNGC	1 cut(s)	180
BstDEI	CTNAG	1 cut(s)	53
BstH2I	RGCGCY	1 cut(s)	53
BstHHI	GCGC	1 cut(s)	52
BstKTI	GATC	2 cut(s)	316, 331
BstMBI	GATC	2 cut(s)	313, 328
BstX2I	RGATCY	1 cut(s)	313
BstYI	RGATCY	1 cut(s)	313
BsuRI	GGCC	1 cut(s)	284
Cac8I	GCNNGC	1 cut(s)	180
CfoI	GCGC	1 cut(s)	52
CviAII	CATG	3 cut(s)	64, 129, 202
CviJI	RGCY	6 cut(s)	70, 146, 152, 284, 301, 340
CviKI_1	RGCY	6 cut(s)	70, 146, 152, 284, 301, 340
DdeI	CTNAG	1 cut(s)	53
DpnI	GATC	2 cut(s)	315, 330
DpnII	GATC	2 cut(s)	313, 328
Eco24I	GRGCYC	1 cut(s)	72
Eco88I	CYCGRG	1 cut(s)	235
EcoT38I	GRGCYC	1 cut(s)	72
FaeI	CATG	3 cut(s)	67, 132, 205
FaiI	YATR	8 cut(s)	65, 85, 130, 167, 203, 245, 269, 333
FatI	CATG	3 cut(s)	63, 128, 201
FbaI	TGATCA	1 cut(s)	328
FblI	GTMKAC	1 cut(s)	230
FriOI	GRGCYC	1 cut(s)	72
FspBI	CTAG	2 cut(s)	302, 321
GlaI	GCGC	1 cut(s)	51
GsuI	CTGGAG	1 cut(s)	168
HaeII	RGCGCY	1 cut(s)	53
HaeIII	GGCC	1 cut(s)	284
HapII	CCGG	1 cut(s)	90
HhaI	GCGC	1 cut(s)	52
Hin1II	CATG	3 cut(s)	67, 132, 205
Hin6I	GCGC	1 cut(s)	50
HinP1I	GCGC	1 cut(s)	50
HinfI	GANTC	1 cut(s)	223
HpaII	CCGG	1 cut(s)	90
Hpy166II	GTNNAC	2 cut(s)	15, 231
Hpy188III	TCNNGA	1 cut(s)	237
Hpy8I	GTNNAC	2 cut(s)	15, 231
HpyAV	CCTTC	1 cut(s)	136
HpyCH4III	ACNGT	2 cut(s)	106, 119
HpyCH4V	TGCA	1 cut(s)	38
HpyF3I	CTNAG	1 cut(s)	53
Hsp92II	CATG	3 cut(s)	67, 132, 205
HspAI	GCGC	1 cut(s)	50
Ksp22I	TGATCA	1 cut(s)	328
Kzo9I	GATC	2 cut(s)	313, 328
LmnI	GCTCC	2 cut(s)	149, 345
LpnPI	CCDG	5 cut(s)	44, 103, 132, 240, 298
LweI	GCATC	1 cut(s)	25
MaeI	CTAG	2 cut(s)	302, 321
MaeIII	GTNAC	3 cut(s)	113, 124, 250
MalI	GATC	2 cut(s)	315, 330
MboI	GATC	2 cut(s)	313, 328
MboII	GAAGA	2 cut(s)	101, 323
MflI	RGATCY	1 cut(s)	313
MhlI	GDGCHC	1 cut(s)	72
MluCI	AATT	5 cut(s)	21, 93, 186, 246, 290
MnlI	CCTC	3 cut(s)	244, 328, 354
MseI	TTAA	1 cut(s)	20
MspI	CCGG	1 cut(s)	90
NdeII	GATC	2 cut(s)	313, 328
NlaIII	CATG	3 cut(s)	67, 132, 205
NmuCI	GTSAC	1 cut(s)	124
PfeI	GAWTC	1 cut(s)	223
PsiI	TTATAA	1 cut(s)	245
PsrI	GAACNNNNNNTAC	2 cut(s)	90, 122
PsuI	RGATCY	1 cut(s)	313
SaqAI	TTAA	1 cut(s)	20
Sau3AI	GATC	2 cut(s)	313, 328
SduI	GDGCHC	1 cut(s)	72
SetI	ASST	4 cut(s)	154, 236, 303, 342
SfaNI	GCATC	1 cut(s)	25
Sse9I	AATT	5 cut(s)	21, 93, 186, 246, 290
SsiI	CCGC	2 cut(s)	8, 176
SspMI	CTAG	2 cut(s)	302, 321
TaaI	ACNGT	2 cut(s)	106, 119
TasI	AATT	5 cut(s)	21, 93, 186, 246, 290
TfiI	GAWTC	1 cut(s)	223
Tru1I	TTAA	1 cut(s)	20
Tru9I	TTAA	1 cut(s)	20
TseFI	GTSAC	1 cut(s)	124
Tsp45I	GTSAC	1 cut(s)	124
TspDTI	ATGAA	2 cut(s)	199, 324
XmiI	GTMKAC	1 cut(s)	230
XspI	CTAG	2 cut(s)	302, 321

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.