Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0001686

Physical Location & Seq

Genomic Coordinates Reverse (-)

5722332 .. 5726076

Gene Structure 3745 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0072000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1281 bp

ATGAGTCAGACTGAAGTAGCGAGGATGAAATCTCCTCTTGTTCCACTTGCAACATTGATTGGGCGTGAGATTAGGGGCGAGAAGGTTGAGGAACCCTATTTGAAGTATGGGCAGGCTGCTTTGGCAAAGAAAGGAGAGGATTATTTTCTGATAAAACCAGATTGCCAAAGAATTCATGCTAATCCTTCAACCTCATTTTCTGTTTTTGCGATATTTGATGGGCATAATGGTAACTCAGCAGCTATTTATGCAAAGGAGACTTTATTGGATAATGTTTTGAGTGCAATTCCTCAAGGTAGCAGTAGGGACGAATGGCTTCAAGCCCTGCCTCGGGCACTGGTTGCCGGTTTTGTGAAAACTGATATAGAATTTCAGCAGAAAGGGGAAACATCTGGTACAACTGTTACATTCGTTGTAATTGATGGTTGGACTGTGACTGTTGCATCTGTTGGGGATTCTAGATGCATATTAGACACCCAGGGAGGTGTGGTTTCACTATTGACTGTTGATCACAGGCTGGAAGAAAATGAAGAGGAAAGGGAGCGTGTGACAGCTAGTGGGGGTGAAGTAGGAAGGCTTAATGTCTTTGGGGGCAGTGAGGTCGGTCCCCTACGCTGCTGGCCTGGTGGGTTATGCCTTTCTAGGTCAATTGGTGACACAGACGTGGGTGAATTTATTGTCCCAGTACCACATGTCAAGCAAGTAAAGCTTTCAAATGCCGGGGGAAGACTTATAATAGCTTCTGATGGCATCTGGGATGCTCTGTCTTCTGATATGGCTGCCAAGTCTTGCCGAGGATTGCCTGCAGAGCTTGCTGCAAAGTTGGTCGTTAAGGAGGCTCTGAGGTCAAGGGGTCTGAAAGATGATACAACCTGCGTAGTTGTTGACATAATCCCATCAGACCGTCCTGTCTTGCCTCCAACTCCGAGGAAGAAACAAAGCATGCTCACTTCACTTATTTTTGGGAAGAAAAGTCAGAATGGGAGCAAAACAAATAAGCTTTCAGCGGTGGGAGTTGTGGAGGAACTGTTTGAAGAAGGTTCAGCAATGCTCGCTGAAAGGTTGGGTAAGGATATTCCTTTGGATGCAAATTCTGGTATTTTCCGGTGTGCAGTCTGCCAAGTTGATCAGCCCCAATCAGAAGGTTTATCAGTAAATTCTGGACCTTTTTTCTCACCATCATCAAAGCCATGGGAAGGCCCCTTCCTCTGCACAACCTGTCGGAAAAAGAAAGACGCCATGGAAGGAAAAAGAATGAGCACACCCACAGTGGCTTTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003002 GO:0003006 GO:0007275 GO:0007389 GO:0008150 GO:0009653 GO:0009791 GO:0009908 GO:0010093 GO:0010097 GO:0022414 GO:0032501 GO:0032502 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048444 GO:0048448 GO:0048449 GO:0048455 GO:0048466 GO:0048608 GO:0048646 GO:0048731 GO:0048827 GO:0048856 GO:0061458 GO:0090567 GO:0090696 GO:0090697 GO:0090698 GO:0090701 GO:0099402 GO:1905392 GO:1905393

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

K-box SRF-TF

Protein Analysis

426

Amino Acids

45.81

Weight (kDa)

6.2

Isoelectric Point (pI)

38.24

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PP2C	PF00481	61 - 280	2.5e-34	Protein phosphatase 2C

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001686)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g34870 FvH4_4g34870 FvH4_4g34870 FvH4_4g34870 FvH4_4g34870 FvH4_4g34870 FvH4_4g34870 FvH4_4g34870
malus_domestica	MD13G1088500.v1.1 MD13G1088700.v1.1 MD16G1088800.v1.1 MD16G1088900.v1.1
prunus_persica	Prupe.1G257200_v2.0.a1 Prupe.1G257300_v2.0.a1 Prupe.1G257400_v2.0.a1 Prupe.1G257500_v2.0.a1 Prupe.1G257600_v2.0.a1 Prupe.1G257700_v2.0.a1
pyrus_communis	pycom13g07640 pycom13g07650 pycom16g07610
rosa_chinensis	RchiOBHm_Chr4g0411271 RchiOBHm_Chr4g0444271 RchiOBHm_Chr4g0444291 RchiOBHm_Chr4g0444301
rosa_laevigata	RLG00000005843
rosa_multiflora	Rmu_sc0002841.1_g000015
rosa_roxburghii	Rroxscaffold_5G00384840 Rroxscaffold_5G00384850
rosa_rugosa	Rorug03G0072000 Rorug03G0072100 Rorug04G0351100 Rorug04G0351200 Rorug04G0351300 Rorug04G0351300 Rorug04G0351300 Rorug04G0351300 Rorug07G0109600
rosa_samantha	Rh1BG171600 Rh4AG412000 Rh4BG070500 Rh4BG423500 Rh4CG078800 Rh4DG418700 Rh4DG418800
rosa_wichuraiana	Rw2G039380 Rw4G013770 Rw4G035390 Rw5G040980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	734
AasI	GACNNNNNNGTC	1 cut(s)	908
Acc36I	ACCTGC	1 cut(s)	881
AciI	CCGC	1 cut(s)	1007
AcsI	RAATTY	5 cut(s)	171, 368, 671, 1090, 1156
AcuI	CTGAAG	1 cut(s)	33
AcyI	GRCGYC	1 cut(s)	1236
AfaI	GTAC	2 cut(s)	397, 687
AfiI	CCNNNNNNNGG	3 cut(s)	330, 331, 1196
AflIII	ACRYGT	1 cut(s)	691
AgsI	TTSAA	5 cut(s)	103, 189, 320, 714, 1034
AjiI	CACGTC	1 cut(s)	664
AjnI	CCWGG	2 cut(s)	477, 622
AleI	CACNNNNGTG	1 cut(s)	662
AluBI	AGCT	6 cut(s)	242, 554, 709, 740, 811, 1000
AluI	AGCT	6 cut(s)	242, 554, 709, 740, 811, 1000
Alw21I	GWGCWC	1 cut(s)	1262
Alw26I	GTCTC	1 cut(s)	251
Ama87I	CYCGRG	1 cut(s)	330
AoxI	GGCC	2 cut(s)	620, 1198
ApeKI	GCWGC	5 cut(s)	116, 239, 615, 779, 815
ApoI	RAATTY	5 cut(s)	171, 368, 671, 1090, 1156
Asp700I	GAANNNNTTC	1 cut(s)	315
AspS9I	GGNCC	3 cut(s)	605, 1163, 1199
AsuC2I	CCSGG	1 cut(s)	721
AsuHPI	GGTGA	4 cut(s)	575, 665, 680, 1167
AvaI	CYCGRG	1 cut(s)	330
AvaII	GGWCC	2 cut(s)	605, 1163
BaeGI	GKGCMC	1 cut(s)	337
BaeI	ACNNNNGTAYC	2 cut(s)	387, 420
BbsI	GAAGAC	2 cut(s)	733, 759
Bbv12I	GWGCWC	1 cut(s)	1262
BbvI	GCAGC	5 cut(s)	103, 251, 602, 766, 802
BccI	CCATC	5 cut(s)	212, 416, 740, 904, 1186
BcgI	CGANNNNNNTGC	2 cut(s)	583, 617
BciT130I	CCWGG	2 cut(s)	479, 624
BclI	TGATCA	2 cut(s)	508, 1126
BcnI	CCSGG	1 cut(s)	721
BcoDI	GTCTC	1 cut(s)	251
BfaI	CTAG	3 cut(s)	459, 555, 642
BfmI	CTRYAG	1 cut(s)	804
BfuAI	ACCTGC	1 cut(s)	881
BisI	GCNGC	5 cut(s)	117, 240, 616, 780, 816
BlsI	GCNGC	5 cut(s)	118, 241, 617, 781, 817
Bme1390I	CCNGG	3 cut(s)	479, 624, 721
Bme18I	GGWCC	2 cut(s)	605, 1163
BmeT110I	CYCGRG	1 cut(s)	330
BmgBI	CACGTC	1 cut(s)	664
BmgT120I	GGNCC	3 cut(s)	605, 1163, 1199
BmiI	GGNNCC	3 cut(s)	93, 607, 1201
BmrFI	CCNGG	3 cut(s)	479, 624, 721
BmrI	ACTGGG	1 cut(s)	677
BmsI	GCATC	5 cut(s)	452, 452, 748, 759, 1075
BmuI	ACTGGG	1 cut(s)	677
BpiI	GAAGAC	2 cut(s)	733, 759
BpuEI	CTTGAG	1 cut(s)	276
BpuMI	CCSGG	1 cut(s)	721
BsaHI	GRCGYC	1 cut(s)	1236
BsaJI	CCNNGG	8 cut(s)	329, 477, 478, 720, 793, 926, 1190, 1239
BsaWI	WCCGGW	1 cut(s)	1104
BsaXI	ACNNNNNCTCC	4 cut(s)	474, 504, 1013, 1043
Bsc4I	CCNNNNNNNGG	3 cut(s)	330, 331, 1196
Bse118I	RCCGGY	1 cut(s)	344
Bse1I	ACTGG	2 cut(s)	342, 683
Bse3DI	GCAATG	1 cut(s)	1053
BseBI	CCWGG	2 cut(s)	479, 624
BseDI	CCNNGG	8 cut(s)	329, 477, 478, 720, 793, 926, 1190, 1239
BseGI	GGATG	3 cut(s)	30, 763, 1090
BseLI	CCNNNNNNNGG	3 cut(s)	330, 331, 1196
BseMI	GCAATG	1 cut(s)	1053
BseMII	CTCAG	2 cut(s)	249, 833
BseNI	ACTGG	2 cut(s)	342, 683
BseRI	GAGGAG	1 cut(s)	24
BseSI	GKGCMC	1 cut(s)	337
BseXI	GCAGC	5 cut(s)	103, 251, 602, 766, 802
BsgI	GTGCAG	2 cut(s)	1131, 1195
BshFI	GGCC	2 cut(s)	622, 1200
BsiHKAI	GWGCWC	1 cut(s)	1262
BsiHKCI	CYCGRG	1 cut(s)	330
BsiSI	CCGG	3 cut(s)	345, 720, 1105
BslFI	GGGAC	3 cut(s)	320, 591, 665
BslI	CCNNNNNNNGG	3 cut(s)	330, 331, 1196
BsmAI	GTCTC	1 cut(s)	251
BsmFI	GGGAC	3 cut(s)	320, 591, 665
BsnI	GGCC	2 cut(s)	622, 1200
BsoBI	CYCGRG	1 cut(s)	330
Bsp1286I	GDGCHC	2 cut(s)	337, 1262
Bsp143I	GATC	2 cut(s)	508, 1126
Bsp19I	CCATGG	2 cut(s)	1190, 1239
BspACI	CCGC	1 cut(s)	1007
BspANI	GGCC	2 cut(s)	622, 1200
BspCNI	CTCAG	2 cut(s)	248, 834
BspLI	GGNNCC	3 cut(s)	93, 607, 1201
BspMAI	CTGCAG	1 cut(s)	808
BspMI	ACCTGC	1 cut(s)	881
BsrDI	GCAATG	1 cut(s)	1053
BsrFI	RCCGGY	1 cut(s)	344
BsrI	ACTGG	2 cut(s)	342, 683
BssAI	RCCGGY	1 cut(s)	344
BssECI	CCNNGG	8 cut(s)	329, 477, 478, 720, 793, 926, 1190, 1239
BssMI	GATC	2 cut(s)	508, 1126
BssNI	GRCGYC	1 cut(s)	1236
BssT1I	CCWWGG	2 cut(s)	1190, 1239
Bst2UI	CCWGG	2 cut(s)	479, 624
Bst4CI	ACNGT	7 cut(s)	403, 433, 439, 505, 905, 1029, 1270
Bst6I	CTCTTC	1 cut(s)	525
BstACI	GRCGYC	1 cut(s)	1236
BstAPI	GCANNNNNTGC	2 cut(s)	341, 812
BstC8I	GCNNGC	6 cut(s)	114, 620, 804, 813, 944, 1053
BstDEI	CTNAG	2 cut(s)	235, 842
BstDSI	CCRYGG	2 cut(s)	1190, 1239
BstF5I	GGATG	3 cut(s)	30, 763, 1090
BstKTI	GATC	2 cut(s)	511, 1129
BstMAI	GTCTC	1 cut(s)	251
BstMBI	GATC	2 cut(s)	508, 1126
BstMWI	GCNNNNNNNGC	7 cut(s)	122, 248, 341, 706, 808, 812, 1052
BstNI	CCWGG	2 cut(s)	479, 624
BstNSI	RCATGY	2 cut(s)	695, 946
BstSCI	CCNGG	3 cut(s)	477, 622, 719
BstSFI	CTRYAG	1 cut(s)	804
BstSLI	GKGCMC	1 cut(s)	337
BstV1I	GCAGC	5 cut(s)	103, 251, 602, 766, 802
BstV2I	GAAGAC	2 cut(s)	733, 759
BsuRI	GGCC	2 cut(s)	622, 1200
BtgI	CCRYGG	2 cut(s)	1190, 1239
BtrI	CACGTC	1 cut(s)	664
BtsCI	GGATG	3 cut(s)	30, 763, 1090
BtsI	GCAGTG	1 cut(s)	601
BtsIMutI	CAGTG	3 cut(s)	335, 601, 1275
BveI	ACCTGC	1 cut(s)	881
Cac8I	GCNNGC	6 cut(s)	114, 620, 804, 813, 944, 1053
Cfr10I	RCCGGY	1 cut(s)	344
Cfr13I	GGNCC	3 cut(s)	605, 1163, 1199
CseI	GACGC	1 cut(s)	1244
Csp6I	GTAC	2 cut(s)	396, 686
CviAII	CATG	5 cut(s)	176, 692, 943, 1191, 1240
CviQI	GTAC	2 cut(s)	396, 686
DdeI	CTNAG	2 cut(s)	235, 842
DpnI	GATC	2 cut(s)	510, 1128
DpnII	GATC	2 cut(s)	508, 1126
DrdI	GACNNNNNNGTC	1 cut(s)	908
DseDI	GACNNNNNNGTC	1 cut(s)	908
Eam1104I	CTCTTC	1 cut(s)	525
EarI	CTCTTC	1 cut(s)	525
Eco130I	CCWWGG	2 cut(s)	1190, 1239
Eco47I	GGWCC	2 cut(s)	605, 1163
Eco57I	CTGAAG	1 cut(s)	33
Eco88I	CYCGRG	1 cut(s)	330
EcoO109I	RGGNCCY	1 cut(s)	1199
EcoRI	GAATTC	1 cut(s)	171
EcoRII	CCWGG	2 cut(s)	477, 622
EcoT14I	CCWWGG	2 cut(s)	1190, 1239
EcoT22I	ATGCAT	1 cut(s)	467
ErhI	CCWWGG	2 cut(s)	1190, 1239
FaeI	CATG	5 cut(s)	179, 695, 946, 1194, 1243
FalI	AAGNNNNNCTT	2 cut(s)	693, 725
FaqI	GGGAC	3 cut(s)	320, 591, 665
FatI	CATG	5 cut(s)	175, 691, 942, 1190, 1239
FbaI	TGATCA	2 cut(s)	508, 1126
Fnu4HI	GCNGC	5 cut(s)	117, 240, 616, 780, 816
FokI	GGATG	3 cut(s)	37, 770, 1097
Fsp4HI	GCNGC	5 cut(s)	117, 240, 616, 780, 816
FspBI	CTAG	3 cut(s)	459, 555, 642
GluI	GCNGC	5 cut(s)	117, 240, 616, 780, 816
HaeIII	GGCC	2 cut(s)	622, 1200
HapII	CCGG	3 cut(s)	345, 720, 1105
HgaI	GACGC	1 cut(s)	1244
Hin1I	GRCGYC	1 cut(s)	1236
Hin1II	CATG	5 cut(s)	179, 695, 946, 1194, 1243
HincII	GTYRAC	1 cut(s)	886
HindII	GTYRAC	1 cut(s)	886
HindIII	AAGCTT	2 cut(s)	707, 998
HinfI	GANTC	2 cut(s)	4, 455
HpaII	CCGG	3 cut(s)	345, 720, 1105
HphI	GGTGA	4 cut(s)	575, 665, 680, 1167
Hpy166II	GTNNAC	1 cut(s)	886
Hpy188III	TCNNGA	2 cut(s)	459, 1161
Hpy8I	GTNNAC	1 cut(s)	886
HpyAV	CCTTC	8 cut(s)	76, 195, 567, 1031, 1136, 1190, 1213, 1238
HpyCH4III	ACNGT	7 cut(s)	403, 433, 439, 505, 905, 1029, 1270
HpyCH4IV	ACGT	1 cut(s)	663
HpyF10VI	GCNNNNNNNGC	7 cut(s)	122, 248, 341, 706, 808, 812, 1052
HpyF3I	CTNAG	2 cut(s)	235, 842
HpySE526I	ACGT	1 cut(s)	663
Hsp92I	GRCGYC	1 cut(s)	1236
Hsp92II	CATG	5 cut(s)	179, 695, 946, 1194, 1243
Ksp22I	TGATCA	2 cut(s)	508, 1126
Kzo9I	GATC	2 cut(s)	508, 1126
LmnI	GCTCC	2 cut(s)	541, 984
Lsp1109I	GCAGC	5 cut(s)	103, 251, 602, 766, 802
LweI	GCATC	5 cut(s)	452, 452, 748, 759, 1075
MaeI	CTAG	3 cut(s)	459, 555, 642
MaeII	ACGT	1 cut(s)	663
MaeIII	GTNAC	5 cut(s)	230, 403, 433, 547, 653
MalI	GATC	2 cut(s)	510, 1128
MboI	GATC	2 cut(s)	508, 1126
MboII	GAAGA	7 cut(s)	533, 542, 738, 759, 943, 979, 1046
MfeI	CAATTG	1 cut(s)	648
MhlI	GDGCHC	2 cut(s)	337, 1262
MluCI	AATT	8 cut(s)	171, 285, 368, 417, 648, 671, 1090, 1156
MlyI	GAGTC	1 cut(s)	13
MmeI	TCCRAC	3 cut(s)	407, 944, 1202
Mph1103I	ATGCAT	1 cut(s)	467
MroXI	GAANNNNTTC	1 cut(s)	315
MseI	TTAA	2 cut(s)	579, 831
MslI	CAYNNNNRTG	1 cut(s)	662
MspA1I	CMGCKG	1 cut(s)	1007
MspI	CCGG	3 cut(s)	345, 720, 1105
MspR9I	CCNGG	3 cut(s)	479, 624, 721
MunI	CAATTG	1 cut(s)	648
MvaI	CCWGG	2 cut(s)	479, 624
MwoI	GCNNNNNNNGC	7 cut(s)	122, 248, 341, 706, 808, 812, 1052
NciI	CCSGG	1 cut(s)	721
NcoI	CCATGG	2 cut(s)	1190, 1239
NdeII	GATC	2 cut(s)	508, 1126
NlaIII	CATG	5 cut(s)	179, 695, 946, 1194, 1243
NlaIV	GGNNCC	3 cut(s)	93, 607, 1201
NmeAIII	GCCGAG	1 cut(s)	818
NmuCI	GTSAC	3 cut(s)	433, 547, 653
NsiI	ATGCAT	1 cut(s)	467
NspI	RCATGY	2 cut(s)	695, 946
OliI	CACNNNNGTG	1 cut(s)	662
PaeI	GCATGC	1 cut(s)	946
PasI	CCCWGGG	1 cut(s)	478
PciI	ACATGT	1 cut(s)	691
PdmI	GAANNNNTTC	1 cut(s)	315
PfeI	GAWTC	1 cut(s)	455
PkrI	GCNGC	5 cut(s)	118, 241, 617, 781, 817
PleI	GAGTC	1 cut(s)	12
PpsI	GAGTC	1 cut(s)	12
PscI	ACATGT	1 cut(s)	691
PsiI	TTATAA	1 cut(s)	734
Psp6I	CCWGG	2 cut(s)	477, 622
PspGI	CCWGG	2 cut(s)	477, 622
PspN4I	GGNNCC	3 cut(s)	93, 607, 1201
PspPI	GGNCC	3 cut(s)	605, 1163, 1199
PstI	CTGCAG	1 cut(s)	808
RsaI	GTAC	2 cut(s)	397, 687
RsaNI	GTAC	2 cut(s)	396, 686
RseI	CAYNNNNRTG	1 cut(s)	662
SaqAI	TTAA	2 cut(s)	579, 831
SatI	GCNGC	5 cut(s)	117, 240, 616, 780, 816
Sau3AI	GATC	2 cut(s)	508, 1126
Sau96I	GGNCC	3 cut(s)	605, 1163, 1199
SchI	GAGTC	1 cut(s)	13
ScrFI	CCNGG	3 cut(s)	479, 624, 721
SduI	GDGCHC	2 cut(s)	337, 1262
SfaNI	GCATC	5 cut(s)	452, 452, 748, 759, 1075
SfcI	CTRYAG	1 cut(s)	804
SinI	GGWCC	2 cut(s)	605, 1163
SmiMI	CAYNNNNRTG	1 cut(s)	662
SmlI	CTYRAG	1 cut(s)	291
SmoI	CTYRAG	1 cut(s)	291
SphI	GCATGC	1 cut(s)	946
Sse9I	AATT	8 cut(s)	171, 285, 368, 417, 648, 671, 1090, 1156
SsiI	CCGC	1 cut(s)	1007
SspMI	CTAG	3 cut(s)	459, 555, 642
StyD4I	CCNGG	3 cut(s)	477, 622, 719
StyI	CCWWGG	2 cut(s)	1190, 1239
TaaI	ACNGT	7 cut(s)	403, 433, 439, 505, 905, 1029, 1270
TaiI	ACGT	1 cut(s)	666
TaqII	GACCGA	1 cut(s)	593
TasI	AATT	8 cut(s)	171, 285, 368, 417, 648, 671, 1090, 1156
TfiI	GAWTC	1 cut(s)	455
Tru1I	TTAA	2 cut(s)	579, 831
Tru9I	TTAA	2 cut(s)	579, 831
TscAI	CASTG	3 cut(s)	342, 601, 1275
TseFI	GTSAC	3 cut(s)	433, 547, 653
TseI	GCWGC	5 cut(s)	116, 239, 615, 779, 815
Tsp45I	GTSAC	3 cut(s)	433, 547, 653
TspDTI	ATGAA	3 cut(s)	41, 164, 543
TspRI	CASTG	3 cut(s)	342, 601, 1275
VpaK11BI	GGWCC	2 cut(s)	605, 1163
XapI	RAATTY	5 cut(s)	171, 368, 671, 1090, 1156
XbaI	TCTAGA	1 cut(s)	458
XceI	RCATGY	2 cut(s)	695, 946
XmnI	GAANNNNTTC	1 cut(s)	315
XspI	CTAG	3 cut(s)	459, 555, 642
Zsp2I	ATGCAT	1 cut(s)	467

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.