Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0001686

Physical Location & Seq

Genomic Coordinates Forward (+)

26748159 .. 26751001

Gene Structure 2843 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G257300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1062 bp

ATGGAGAGTATACTGCCATTTCTAGGGATGGTGATGGCGATTCTGGCTCAAGCTGCAAATATGATAGTAAACAAAGCAGCCATGTCCAAAGGGAGCAACAAATACATTATGGTTGTGTATGCCAACGGCCTCTCCACTCTCATTCTTCTCCCTCCAGCCCTCTTCTTCCACTACAGATCAGGGCGCCCTCCCCTTACATTCTCCATACTCTGCAGATTCTTCATGCTTGCCCTGTTTGGATGTTCTGCCCAGATATTTGGATATGTTGGTATAGAATACAGCTCTGCCACGCTTGGCACCGCCATGCTTAACCTCATCCCAGCATTTACTTTCACACTTGCCATCATTTTCAGGATGGAAAAGGTGCAGTGGAGAAGCTCAAGCAGTAAAGCCAAAATTTTGGGAACCACAGCATCAATCGCAGGAGCTTTTGTTGTAACATTCTACAAAGGCCAGCCAATCATGCTGCTACCATCATCACATCCACCCAATCTCTTCTCATCAAAATCAAATTGGGTTCTGGGAGGCCTTTTTCTTGCAGCTGATTCCTTCTCCAGTTCCTTATGGTACATTCTGCAGGCATCAACCCTAAAGAAGTACCCAGCAGTTGTGGTCATAGTCTGTTTTCAAAGCTTATTCACTACCATTCAGTCTGCATTATTTACTTTGATTGCAGTTAAAGATGCAAGTGCTTGGGAGTTAAGGTTGGATATGGGGCTGATTGCTGTTTTGTACACTGCAATTGTTTCAATCGTTCTCCGTTACACTTTAACCACCTGGTGTGTGTGGAAGGCTGGAGCTCTTTTTTGTTCTATGTTTAAGCCTCTTGGAATTATTTTTGGTGTGATCATGGGTGCCATCTTTTTGGGAGATCCATTCTATTTTGGGAGTTTGGTTGGTGCACTTATGATTGTTACTGGGTTTTATGCGGTGATGTGGGGAAAGGCCAAAGAAGAGAAGCTGGTGGAAGGTGGTAGTCGTTGGGAATCATTAGGTCAAAATAATGTCCCTCTACTACAAAACAATATACAAGAGAAGCACAACTGCACAAGTATCTTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0005887 GO:0005938 GO:0007154 GO:0007165 GO:0008150 GO:0009719 GO:0009725 GO:0009733 GO:0009734 GO:0009755 GO:0009987 GO:0010033 GO:0016020 GO:0016021 GO:0023052 GO:0031224 GO:0031226 GO:0032870 GO:0042221 GO:0044424 GO:0044425 GO:0044444 GO:0044459 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0070887 GO:0071310 GO:0071365 GO:0071495 GO:0071944 GO:0099568

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EamA

Protein Analysis

354

Amino Acids

38.69

Weight (kDa)

9.46

Isoelectric Point (pI)

43.94

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001686)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g34870 FvH4_4g34870 FvH4_4g34870 FvH4_4g34870 FvH4_4g34870 FvH4_4g34870 FvH4_4g34870 FvH4_4g34870
malus_domestica	MD13G1088500.v1.1 MD13G1088700.v1.1 MD16G1088800.v1.1 MD16G1088900.v1.1
prunus_persica	Prupe.1G257200_v2.0.a1 Prupe.1G257300_v2.0.a1 Prupe.1G257400_v2.0.a1 Prupe.1G257500_v2.0.a1 Prupe.1G257600_v2.0.a1 Prupe.1G257700_v2.0.a1
pyrus_communis	pycom13g07640 pycom13g07650 pycom16g07610
rosa_chinensis	RchiOBHm_Chr4g0411271 RchiOBHm_Chr4g0444271 RchiOBHm_Chr4g0444291 RchiOBHm_Chr4g0444301
rosa_laevigata	RLG00000005843
rosa_multiflora	Rmu_sc0002841.1_g000015
rosa_roxburghii	Rroxscaffold_5G00384840 Rroxscaffold_5G00384850
rosa_rugosa	Rorug03G0072000 Rorug03G0072100 Rorug04G0351100 Rorug04G0351200 Rorug04G0351300 Rorug04G0351300 Rorug04G0351300 Rorug04G0351300 Rorug07G0109600
rosa_samantha	Rh1BG171600 Rh4AG412000 Rh4BG070500 Rh4BG423500 Rh4CG078800 Rh4DG418700 Rh4DG418800
rosa_wichuraiana	Rw2G039380 Rw4G013770 Rw4G035390 Rw5G040980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	3 cut(s)	183, 296, 854
AccI	GTMKAC	1 cut(s)	10
AciI	CCGC	2 cut(s)	300, 929
AclWI	GGATC	1 cut(s)	866
AcsI	RAATTY	1 cut(s)	396
AcyI	GRCGYC	1 cut(s)	184
AdeI	CACNNNGTG	1 cut(s)	780
AfaI	GTAC	3 cut(s)	569, 599, 734
AfiI	CCNNNNNNNGG	1 cut(s)	23
AgsI	TTSAA	2 cut(s)	629, 750
AjnI	CCWGG	1 cut(s)	776
AluBI	AGCT	8 cut(s)	53, 282, 378, 428, 542, 633, 800, 961
AluI	AGCT	8 cut(s)	53, 282, 378, 428, 542, 633, 800, 961
Alw21I	GWGCWC	2 cut(s)	802, 904
Alw44I	GTGCAC	1 cut(s)	900
AlwI	GGATC	1 cut(s)	866
AoxI	GGCC	4 cut(s)	127, 451, 526, 945
ApaLI	GTGCAC	1 cut(s)	900
ApeKI	GCWGC	4 cut(s)	53, 77, 466, 539
ApoI	RAATTY	1 cut(s)	396
AspLEI	GCGC	1 cut(s)	186
AsuHPI	GGTGA	2 cut(s)	43, 943
BaeGI	GKGCMC	1 cut(s)	904
BanI	GGYRCC	3 cut(s)	183, 296, 854
BanII	GRGCYC	1 cut(s)	802
Bbv12I	GWGCWC	2 cut(s)	802, 904
BbvI	GCAGC	4 cut(s)	40, 89, 453, 551
BccI	CCATC	6 cut(s)	22, 28, 349, 350, 481, 866
BceAI	ACGGC	1 cut(s)	142
BciT130I	CCWGG	1 cut(s)	778
BclI	TGATCA	1 cut(s)	846
BfaI	CTAG	1 cut(s)	23
BfmI	CTRYAG	3 cut(s)	172, 211, 575
BfoI	RGCGCY	1 cut(s)	187
BisI	GCNGC	4 cut(s)	54, 78, 467, 540
BlsI	GCNGC	4 cut(s)	55, 79, 468, 541
Bme1390I	CCNGG	1 cut(s)	778
BmiI	GGNNCC	4 cut(s)	185, 298, 406, 856
BmrFI	CCNGG	1 cut(s)	778
BmrI	ACTGGG	1 cut(s)	927
BmsI	GCATC	3 cut(s)	422, 590, 673
BmuI	ACTGGG	1 cut(s)	927
BpmI	CTGGAG	3 cut(s)	138, 538, 816
BpuEI	CTTGAG	2 cut(s)	33, 364
BsaHI	GRCGYC	1 cut(s)	184
BsaXI	ACNNNNNCTCC	6 cut(s)	116, 146, 417, 447, 689, 719
Bsc4I	CCNNNNNNNGG	1 cut(s)	23
Bse1I	ACTGG	2 cut(s)	555, 922
BseBI	CCWGG	1 cut(s)	778
BseGI	GGATG	5 cut(s)	33, 245, 315, 360, 481
BseLI	CCNNNNNNNGG	1 cut(s)	23
BseNI	ACTGG	2 cut(s)	555, 922
BseSI	GKGCMC	1 cut(s)	904
BseXI	GCAGC	4 cut(s)	40, 89, 453, 551
BseYI	CCCAGC	2 cut(s)	319, 601
BsgI	GTGCAG	2 cut(s)	386, 1030
BshFI	GGCC	4 cut(s)	129, 453, 528, 947
BshNI	GGYRCC	3 cut(s)	183, 296, 854
BsiHKAI	GWGCWC	2 cut(s)	802, 904
BslFI	GGGAC	1 cut(s)	992
BslI	CCNNNNNNNGG	1 cut(s)	23
BsmFI	GGGAC	1 cut(s)	992
BsnI	GGCC	4 cut(s)	129, 453, 528, 947
Bsp1286I	GDGCHC	2 cut(s)	802, 904
Bsp1407I	TGTACA	1 cut(s)	732
Bsp143I	GATC	3 cut(s)	176, 846, 871
BspACI	CCGC	2 cut(s)	300, 929
BspANI	GGCC	4 cut(s)	129, 453, 528, 947
BspLI	GGNNCC	4 cut(s)	185, 298, 406, 856
BspMAI	CTGCAG	2 cut(s)	215, 579
BspPI	GGATC	1 cut(s)	866
BspT107I	GGYRCC	3 cut(s)	183, 296, 854
BsrGI	TGTACA	1 cut(s)	732
BsrI	ACTGG	2 cut(s)	555, 922
BssMI	GATC	3 cut(s)	176, 846, 871
BssNAI	GTATAC	1 cut(s)	11
BssNI	GRCGYC	1 cut(s)	184
Bst1107I	GTATAC	1 cut(s)	11
Bst2UI	CCWGG	1 cut(s)	778
Bst6I	CTCTTC	3 cut(s)	167, 500, 948
BstACI	GRCGYC	1 cut(s)	184
BstAUI	TGTACA	1 cut(s)	732
BstC8I	GCNNGC	3 cut(s)	228, 455, 579
BstF5I	GGATG	5 cut(s)	33, 245, 315, 360, 481
BstH2I	RGCGCY	1 cut(s)	187
BstHHI	GCGC	1 cut(s)	186
BstKTI	GATC	3 cut(s)	179, 849, 874
BstMBI	GATC	3 cut(s)	176, 846, 871
BstMWI	GCNNNNNNNGC	4 cut(s)	44, 53, 419, 463
BstNI	CCWGG	1 cut(s)	778
BstSCI	CCNGG	1 cut(s)	776
BstSFI	CTRYAG	3 cut(s)	172, 211, 575
BstSLI	GKGCMC	1 cut(s)	904
BstV1I	GCAGC	4 cut(s)	40, 89, 453, 551
BstX2I	RGATCY	1 cut(s)	871
BstXI	CCANNNNNNTGG	3 cut(s)	257, 400, 865
BstYI	RGATCY	1 cut(s)	871
BstZ17I	GTATAC	1 cut(s)	11
BsuRI	GGCC	4 cut(s)	129, 453, 528, 947
BtsCI	GGATG	5 cut(s)	33, 245, 315, 360, 481
BtsI	GCAGTG	2 cut(s)	374, 735
BtsIMutI	CAGTG	2 cut(s)	374, 735
Cac8I	GCNNGC	3 cut(s)	228, 455, 579
CfoI	GCGC	1 cut(s)	186
CsiI	ACCWGGT	1 cut(s)	776
Csp6I	GTAC	3 cut(s)	568, 598, 733
CviAII	CATG	5 cut(s)	82, 223, 304, 463, 850
CviQI	GTAC	3 cut(s)	568, 598, 733
DinI	GGCGCC	1 cut(s)	185
DpnI	GATC	3 cut(s)	178, 848, 873
DpnII	GATC	3 cut(s)	176, 846, 871
DraIII	CACNNNGTG	1 cut(s)	780
Eam1104I	CTCTTC	3 cut(s)	167, 500, 948
EarI	CTCTTC	3 cut(s)	167, 500, 948
Ecl136II	GAGCTC	1 cut(s)	800
Eco147I	AGGCCT	1 cut(s)	528
Eco24I	GRGCYC	1 cut(s)	802
Eco53kI	GAGCTC	1 cut(s)	800
EcoICRI	GAGCTC	1 cut(s)	800
EcoRII	CCWGG	1 cut(s)	776
EcoT38I	GRGCYC	1 cut(s)	802
EgeI	GGCGCC	1 cut(s)	185
EheI	GGCGCC	1 cut(s)	185
FaeI	CATG	5 cut(s)	85, 226, 307, 466, 853
FaqI	GGGAC	1 cut(s)	992
FatI	CATG	5 cut(s)	81, 222, 303, 462, 849
FbaI	TGATCA	1 cut(s)	846
FblI	GTMKAC	1 cut(s)	10
Fnu4HI	GCNGC	4 cut(s)	54, 78, 467, 540
FokI	GGATG	5 cut(s)	40, 252, 302, 367, 468
FriOI	GRGCYC	1 cut(s)	802
Fsp4HI	GCNGC	4 cut(s)	54, 78, 467, 540
FspBI	CTAG	1 cut(s)	23
GlaI	GCGC	1 cut(s)	185
GluI	GCNGC	4 cut(s)	54, 78, 467, 540
GsaI	CCCAGC	2 cut(s)	323, 605
GsuI	CTGGAG	3 cut(s)	138, 538, 816
HaeII	RGCGCY	1 cut(s)	187
HaeIII	GGCC	4 cut(s)	129, 453, 528, 947
HhaI	GCGC	1 cut(s)	186
Hin1I	GRCGYC	1 cut(s)	184
Hin1II	CATG	5 cut(s)	85, 226, 307, 466, 853
Hin6I	GCGC	1 cut(s)	184
HinP1I	GCGC	1 cut(s)	184
HindIII	AAGCTT	1 cut(s)	631
HinfI	GANTC	4 cut(s)	40, 216, 545, 986
HphI	GGTGA	2 cut(s)	43, 943
Hpy166II	GTNNAC	4 cut(s)	11, 70, 735, 902
Hpy188III	TCNNGA	1 cut(s)	352
Hpy8I	GTNNAC	4 cut(s)	11, 70, 735, 902
HpyAV	CCTTC	3 cut(s)	559, 784, 962
HpyF10VI	GCNNNNNNNGC	4 cut(s)	44, 53, 419, 463
Hsp92I	GRCGYC	1 cut(s)	184
Hsp92II	CATG	5 cut(s)	85, 226, 307, 466, 853
HspAI	GCGC	1 cut(s)	184
KasI	GGCGCC	1 cut(s)	183
Ksp22I	TGATCA	1 cut(s)	846
Kzo9I	GATC	3 cut(s)	176, 846, 871
LmnI	GCTCC	3 cut(s)	93, 425, 797
Lsp1109I	GCAGC	4 cut(s)	40, 89, 453, 551
LweI	GCATC	3 cut(s)	422, 590, 673
MabI	ACCWGGT	1 cut(s)	776
MaeI	CTAG	1 cut(s)	23
MaeIII	GTNAC	3 cut(s)	436, 761, 913
MalI	GATC	3 cut(s)	178, 848, 873
MboI	GATC	3 cut(s)	176, 846, 871
MboII	GAAGA	6 cut(s)	137, 154, 157, 211, 487, 965
MfeI	CAATTG	1 cut(s)	741
MflI	RGATCY	1 cut(s)	871
MhlI	GDGCHC	2 cut(s)	802, 904
MluCI	AATT	4 cut(s)	396, 511, 741, 831
Mly113I	GGCGCC	1 cut(s)	184
MmeI	TCCRAC	1 cut(s)	687
MnlI	CCTC	8 cut(s)	140, 162, 170, 198, 323, 518, 834, 1020
MseI	TTAA	5 cut(s)	309, 678, 701, 770, 819
MslI	CAYNNNNRTG	1 cut(s)	302
MspA1I	CMGCKG	1 cut(s)	542
MspR9I	CCNGG	1 cut(s)	778
MunI	CAATTG	1 cut(s)	741
MvaI	CCWGG	1 cut(s)	778
MwoI	GCNNNNNNNGC	4 cut(s)	44, 53, 419, 463
NarI	GGCGCC	1 cut(s)	184
NdeII	GATC	3 cut(s)	176, 846, 871
NlaIII	CATG	5 cut(s)	85, 226, 307, 466, 853
NlaIV	GGNNCC	4 cut(s)	185, 298, 406, 856
PceI	AGGCCT	1 cut(s)	528
PfeI	GAWTC	4 cut(s)	40, 216, 545, 986
PkrI	GCNGC	4 cut(s)	55, 79, 468, 541
PluTI	GGCGCC	1 cut(s)	187
Psp124BI	GAGCTC	1 cut(s)	802
Psp6I	CCWGG	1 cut(s)	776
PspFI	CCCAGC	2 cut(s)	319, 601
PspGI	CCWGG	1 cut(s)	776
PspN4I	GGNNCC	4 cut(s)	185, 298, 406, 856
PstI	CTGCAG	2 cut(s)	215, 579
PsuI	RGATCY	1 cut(s)	871
PvuII	CAGCTG	1 cut(s)	542
RsaI	GTAC	3 cut(s)	569, 599, 734
RsaNI	GTAC	3 cut(s)	568, 598, 733
RseI	CAYNNNNRTG	1 cut(s)	302
SacI	GAGCTC	1 cut(s)	802
SaqAI	TTAA	5 cut(s)	309, 678, 701, 770, 819
SatI	GCNGC	4 cut(s)	54, 78, 467, 540
Sau3AI	GATC	3 cut(s)	176, 846, 871
ScrFI	CCNGG	1 cut(s)	778
SduI	GDGCHC	2 cut(s)	802, 904
SexAI	ACCWGGT	1 cut(s)	776
SfaNI	GCATC	3 cut(s)	422, 590, 673
SfcI	CTRYAG	3 cut(s)	172, 211, 575
SfoI	GGCGCC	1 cut(s)	185
SmiMI	CAYNNNNRTG	1 cut(s)	302
SmlI	CTYRAG	2 cut(s)	48, 379
SmoI	CTYRAG	2 cut(s)	48, 379
Sse9I	AATT	4 cut(s)	396, 511, 741, 831
SseBI	AGGCCT	1 cut(s)	528
SsiI	CCGC	2 cut(s)	300, 929
SspDI	GGCGCC	1 cut(s)	183
SspMI	CTAG	1 cut(s)	23
SstI	GAGCTC	1 cut(s)	802
StuI	AGGCCT	1 cut(s)	528
StyD4I	CCNGG	1 cut(s)	776
TasI	AATT	4 cut(s)	396, 511, 741, 831
TatI	WGTACW	1 cut(s)	732
TfiI	GAWTC	4 cut(s)	40, 216, 545, 986
Tru1I	TTAA	5 cut(s)	309, 678, 701, 770, 819
Tru9I	TTAA	5 cut(s)	309, 678, 701, 770, 819
TscAI	CASTG	2 cut(s)	374, 742
TseI	GCWGC	4 cut(s)	53, 77, 466, 539
TspDTI	ATGAA	1 cut(s)	211
TspGWI	ACGGA	1 cut(s)	749
TspRI	CASTG	2 cut(s)	374, 742
VneI	GTGCAC	1 cut(s)	900
XapI	RAATTY	1 cut(s)	396
XmiI	GTMKAC	1 cut(s)	10
XspI	CTAG	1 cut(s)	23

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.