Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr2

Orthogroup ID

OG0001686

Physical Location & Seq

Genomic Coordinates Forward (+)

64535884 .. 64538702

Gene Structure 2819 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw2G039380.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 831 bp

ATGTCTTTAAGTTCAGGGCATATTATATTATTGTACTTTCTGTTTTTGTTTTCGGTTGATATTCTCTGTTGGTTCTTCTTGCTTGGTCTACTTGGGTGTATAGCTCAGTTGATTGGGTATGCTGGAATTAATTACAGCTCTCCTACGCTTGGCACGGCTATGTCAACCTTATTCCAGCTTTCACTTTTGTACTTGCAGTTGTATTCAGAATGGAAAAAAATTGATCGGAGAAGCTGCAGTACCCTAGCTAAAACCTTGGGAACAATAGTTTCAATATCAGGGGCTTTCATTGTGACTCTTTACAAGGGACCCCCACAACTGATGACAGCCTCAGTTGATTTATTGTCTCACAATAAACTTTTCTTGCCACAGTCGAATTGGGTCATTGGAGGAATGCTCCTTGGGTTTTATTGTGTGGTGGCTGCAGCATTTCTTATCATACAGCTCATTATAGTCTTTTACTATTGCTTCTTTGTGGCTATTCAATCTGTAGTGGTGTTGTGGTTTGTGGAAAGAGACTCAAGTGCTTGGGCCTTAAACCCTAAGTTAAGGTTGTTTGCGGTTTTATACTCAGGAGTTTTTGGCTCAGCGTTCCAGGTTGGACTTTTTAGTCTTGTTCCGCTTCGCAAGGTAACTACTTGCACTGTGGTTTGTTCAATCTTCCAACAATGTTGGGTCTTCATAGCTATTGCCCTTATTTTGGGGGATGGTCCATACAATTTGATCAAGATTATAGCCATTACTATCAAGGAAATATGCAATAAAAGTAGTAAACAGAGCAATCTTCCTTTGTTTAAAGAAAAGTTGGGTGAGTATTCATATGATGTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0005887 GO:0005938 GO:0006810 GO:0007154 GO:0007165 GO:0008150 GO:0009719 GO:0009725 GO:0009733 GO:0009734 GO:0009755 GO:0009987 GO:0010033 GO:0016020 GO:0016021 GO:0022857 GO:0023052 GO:0031224 GO:0031226 GO:0032870 GO:0042221 GO:0044424 GO:0044425 GO:0044444 GO:0044459 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0051716 GO:0055085 GO:0065007 GO:0070887 GO:0071310 GO:0071365 GO:0071495 GO:0071944 GO:0099568

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EamA

Protein Analysis

276

Amino Acids

30.74

Weight (kDa)

8.91

Isoelectric Point (pI)

41.11

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001686)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g34870 FvH4_4g34870 FvH4_4g34870 FvH4_4g34870 FvH4_4g34870 FvH4_4g34870 FvH4_4g34870 FvH4_4g34870
malus_domestica	MD13G1088500.v1.1 MD13G1088700.v1.1 MD16G1088800.v1.1 MD16G1088900.v1.1
prunus_persica	Prupe.1G257200_v2.0.a1 Prupe.1G257300_v2.0.a1 Prupe.1G257400_v2.0.a1 Prupe.1G257500_v2.0.a1 Prupe.1G257600_v2.0.a1 Prupe.1G257700_v2.0.a1
pyrus_communis	pycom13g07640 pycom13g07650 pycom16g07610
rosa_chinensis	RchiOBHm_Chr4g0411271 RchiOBHm_Chr4g0444271 RchiOBHm_Chr4g0444291 RchiOBHm_Chr4g0444301
rosa_laevigata	RLG00000005843
rosa_multiflora	Rmu_sc0002841.1_g000015
rosa_roxburghii	Rroxscaffold_5G00384840 Rroxscaffold_5G00384850
rosa_rugosa	Rorug03G0072000 Rorug03G0072100 Rorug04G0351100 Rorug04G0351200 Rorug04G0351300 Rorug04G0351300 Rorug04G0351300 Rorug04G0351300 Rorug07G0109600
rosa_samantha	Rh1BG171600 Rh4AG412000 Rh4BG070500 Rh4BG423500 Rh4CG078800 Rh4DG418700 Rh4DG418800
rosa_wichuraiana	Rw2G039380 Rw4G013770 Rw4G035390 Rw5G040980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	609
AccI	GTMKAC	1 cut(s)	88
AciI	CCGC	2 cut(s)	560, 620
AfaI	GTAC	3 cut(s)	35, 191, 241
AfiI	CCNNNNNNNGG	2 cut(s)	149, 700
AgsI	TTSAA	3 cut(s)	273, 485, 657
AjnI	CCWGG	1 cut(s)	594
AluBI	AGCT	7 cut(s)	104, 138, 178, 234, 248, 445, 686
AluI	AGCT	7 cut(s)	104, 138, 178, 234, 248, 445, 686
Alw26I	GTCTC	2 cut(s)	351, 510
AoxI	GGCC	1 cut(s)	531
ApeKI	GCWGC	3 cut(s)	234, 422, 425
AseI	ATTAAT	1 cut(s)	129
AspS9I	GGNCC	3 cut(s)	308, 531, 710
AsuHPI	GGTGA	1 cut(s)	821
AvaII	GGWCC	2 cut(s)	308, 710
BarI	GAAGNNNNNNTAC	2 cut(s)	223, 255
BbsI	GAAGAC	1 cut(s)	670
BbvI	GCAGC	3 cut(s)	221, 409, 437
BccI	CCATC	1 cut(s)	701
BceAI	ACGGC	1 cut(s)	171
BciT130I	CCWGG	1 cut(s)	596
BclI	TGATCA	1 cut(s)	723
BcoDI	GTCTC	2 cut(s)	351, 510
BfaI	CTAG	1 cut(s)	245
BfmI	CTRYAG	3 cut(s)	235, 423, 489
BisI	GCNGC	3 cut(s)	235, 423, 426
BlpI	GCTNAGC	1 cut(s)	586
BlsI	GCNGC	3 cut(s)	236, 424, 427
Bme1390I	CCNGG	1 cut(s)	596
Bme18I	GGWCC	2 cut(s)	308, 710
BmgT120I	GGNCC	3 cut(s)	308, 531, 710
BmiI	GGNNCC	2 cut(s)	309, 310
BmrFI	CCNGG	1 cut(s)	596
BpiI	GAAGAC	1 cut(s)	670
BplI	GAGNNNNNCTC	2 cut(s)	381, 413
Bpu1102I	GCTNAGC	1 cut(s)	586
BpuEI	CTTGAG	1 cut(s)	505
BsaJI	CCNNGG	2 cut(s)	255, 400
Bsc4I	CCNNNNNNNGG	2 cut(s)	149, 700
BseBI	CCWGG	1 cut(s)	596
BseDI	CCNNGG	2 cut(s)	255, 400
BseGI	GGATG	1 cut(s)	712
BseLI	CCNNNNNNNGG	2 cut(s)	149, 700
BseMII	CTCAG	4 cut(s)	119, 345, 585, 600
BseXI	GCAGC	3 cut(s)	221, 409, 437
BshFI	GGCC	1 cut(s)	533
BslFI	GGGAC	1 cut(s)	321
BslI	CCNNNNNNNGG	2 cut(s)	149, 700
BsmAI	GTCTC	2 cut(s)	351, 510
BsmFI	GGGAC	1 cut(s)	321
BsmI	GAATGC	1 cut(s)	399
BsnI	GGCC	1 cut(s)	533
Bsp143I	GATC	2 cut(s)	223, 723
Bsp1720I	GCTNAGC	1 cut(s)	586
BspACI	CCGC	2 cut(s)	560, 620
BspANI	GGCC	1 cut(s)	533
BspCNI	CTCAG	4 cut(s)	118, 344, 584, 599
BspLI	GGNNCC	2 cut(s)	309, 310
BspMAI	CTGCAG	2 cut(s)	239, 427
BssECI	CCNNGG	2 cut(s)	255, 400
BssMI	GATC	2 cut(s)	223, 723
BssT1I	CCWWGG	2 cut(s)	255, 400
Bst2UI	CCWGG	1 cut(s)	596
Bst4CI	ACNGT	2 cut(s)	372, 646
BstDEI	CTNAG	5 cut(s)	105, 331, 543, 571, 586
BstF5I	GGATG	1 cut(s)	712
BstKTI	GATC	2 cut(s)	226, 726
BstMAI	GTCTC	2 cut(s)	351, 510
BstMBI	GATC	2 cut(s)	223, 723
BstNI	CCWGG	1 cut(s)	596
BstSCI	CCNGG	1 cut(s)	594
BstSFI	CTRYAG	3 cut(s)	235, 423, 489
BstV1I	GCAGC	3 cut(s)	221, 409, 437
BstV2I	GAAGAC	1 cut(s)	670
BsuRI	GGCC	1 cut(s)	533
BtsCI	GGATG	1 cut(s)	712
BtsIMutI	CAGTG	1 cut(s)	642
Cfr13I	GGNCC	3 cut(s)	308, 531, 710
Csp6I	GTAC	3 cut(s)	34, 190, 240
CviQI	GTAC	3 cut(s)	34, 190, 240
DdeI	CTNAG	5 cut(s)	105, 331, 543, 571, 586
DpnI	GATC	2 cut(s)	225, 725
DpnII	GATC	2 cut(s)	223, 723
DraI	TTTAAA	1 cut(s)	796
DrdI	GACNNNNNNGTC	1 cut(s)	609
DseDI	GACNNNNNNGTC	1 cut(s)	609
Eco130I	CCWWGG	2 cut(s)	255, 400
Eco47I	GGWCC	2 cut(s)	308, 710
EcoO109I	RGGNCCY	1 cut(s)	308
EcoRII	CCWGG	1 cut(s)	594
EcoT14I	CCWWGG	2 cut(s)	255, 400
ErhI	CCWWGG	2 cut(s)	255, 400
FaqI	GGGAC	1 cut(s)	321
FauNDI	CATATG	1 cut(s)	820
FbaI	TGATCA	1 cut(s)	723
FblI	GTMKAC	1 cut(s)	88
Fnu4HI	GCNGC	3 cut(s)	235, 423, 426
FokI	GGATG	1 cut(s)	719
Fsp4HI	GCNGC	3 cut(s)	235, 423, 426
FspBI	CTAG	1 cut(s)	245
GluI	GCNGC	3 cut(s)	235, 423, 426
HaeIII	GGCC	1 cut(s)	533
HincII	GTYRAC	1 cut(s)	165
HindII	GTYRAC	1 cut(s)	165
HinfI	GANTC	2 cut(s)	295, 518
HphI	GGTGA	1 cut(s)	821
Hpy166II	GTNNAC	3 cut(s)	89, 165, 773
Hpy188I	TCNGA	2 cut(s)	208, 228
Hpy188III	TCNNGA	2 cut(s)	573, 727
Hpy8I	GTNNAC	3 cut(s)	89, 165, 773
HpyCH4III	ACNGT	2 cut(s)	372, 646
HpyCH4V	TGCA	5 cut(s)	196, 237, 425, 642, 759
HpyF3I	CTNAG	5 cut(s)	105, 331, 543, 571, 586
KflI	GGGWCCC	1 cut(s)	308
Ksp22I	TGATCA	1 cut(s)	723
Kzo9I	GATC	2 cut(s)	223, 723
LmnI	GCTCC	1 cut(s)	402
LpnPI	CCDG	6 cut(s)	108, 188, 264, 558, 581, 608
Lsp1109I	GCAGC	3 cut(s)	221, 409, 437
MaeI	CTAG	1 cut(s)	245
MaeIII	GTNAC	2 cut(s)	292, 631
MalI	GATC	2 cut(s)	225, 725
MboI	GATC	2 cut(s)	223, 723
MboII	GAAGA	4 cut(s)	67, 652, 670, 776
MluCI	AATT	5 cut(s)	126, 130, 219, 376, 718
MlyI	GAGTC	2 cut(s)	289, 512
MmeI	TCCRAC	2 cut(s)	580, 688
MnlI	CCTC	2 cut(s)	340, 383
MseI	TTAA	5 cut(s)	8, 129, 536, 548, 795
MslI	CAYNNNNRTG	1 cut(s)	158
MspR9I	CCNGG	1 cut(s)	596
Mva1269I	GAATGC	1 cut(s)	399
MvaI	CCWGG	1 cut(s)	596
NdeI	CATATG	1 cut(s)	820
NdeII	GATC	2 cut(s)	223, 723
NlaIV	GGNNCC	2 cut(s)	309, 310
NmuCI	GTSAC	1 cut(s)	292
PctI	GAATGC	1 cut(s)	399
PkrI	GCNGC	3 cut(s)	236, 424, 427
PleI	GAGTC	2 cut(s)	289, 512
PpsI	GAGTC	2 cut(s)	289, 512
PpuMI	RGGWCCY	1 cut(s)	308
PshBI	ATTAAT	1 cut(s)	129
Psp5II	RGGWCCY	1 cut(s)	308
Psp6I	CCWGG	1 cut(s)	594
PspGI	CCWGG	1 cut(s)	594
PspN4I	GGNNCC	2 cut(s)	309, 310
PspPI	GGNCC	3 cut(s)	308, 531, 710
PspPPI	RGGWCCY	1 cut(s)	308
PstI	CTGCAG	2 cut(s)	239, 427
RsaI	GTAC	3 cut(s)	35, 191, 241
RsaNI	GTAC	3 cut(s)	34, 190, 240
RseI	CAYNNNNRTG	1 cut(s)	158
SaqAI	TTAA	5 cut(s)	8, 129, 536, 548, 795
SatI	GCNGC	3 cut(s)	235, 423, 426
Sau3AI	GATC	2 cut(s)	223, 723
Sau96I	GGNCC	3 cut(s)	308, 531, 710
SchI	GAGTC	2 cut(s)	289, 512
ScrFI	CCNGG	1 cut(s)	596
SfcI	CTRYAG	3 cut(s)	235, 423, 489
SinI	GGWCC	2 cut(s)	308, 710
SmiMI	CAYNNNNRTG	1 cut(s)	158
SmlI	CTYRAG	1 cut(s)	520
SmoI	CTYRAG	1 cut(s)	520
Sse9I	AATT	5 cut(s)	126, 130, 219, 376, 718
SsiI	CCGC	2 cut(s)	560, 620
SspMI	CTAG	1 cut(s)	245
StyD4I	CCNGG	1 cut(s)	594
StyI	CCWWGG	2 cut(s)	255, 400
TaaI	ACNGT	2 cut(s)	372, 646
TaqI	TCGA	1 cut(s)	374
TasI	AATT	5 cut(s)	126, 130, 219, 376, 718
TatI	WGTACW	2 cut(s)	33, 189
Tru1I	TTAA	5 cut(s)	8, 129, 536, 548, 795
Tru9I	TTAA	5 cut(s)	8, 129, 536, 548, 795
TscAI	CASTG	1 cut(s)	649
TseFI	GTSAC	1 cut(s)	292
TseI	GCWGC	3 cut(s)	234, 422, 425
Tsp45I	GTSAC	1 cut(s)	292
TspDTI	ATGAA	3 cut(s)	277, 670, 807
TspRI	CASTG	1 cut(s)	649
VpaK11BI	GGWCC	2 cut(s)	308, 710
VspI	ATTAAT	1 cut(s)	129
XcmI	CCANNNNNNNNNTGG	1 cut(s)	375
XmiI	GTMKAC	1 cut(s)	88
XspI	CTAG	1 cut(s)	245

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.