Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0001686

Physical Location & Seq

Genomic Coordinates Forward (+)

26751120 .. 26754649

Gene Structure 3530 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G257400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1053 bp

ATGGGGAAAGTTGCAGCACTACCTATAGTAGGGATGATGATGACTGAGTGTGCTGGAGCAGGGGTCATAATACTAAGTAAAGCAGCCATGTCTACTGGCATGAGCAACCTCATCTTTGTCTTCTACTCCAACGCTCTTGCTGCCCTCATCCTCCTCCCTACTTCTTTAGCCTTCCACAGATCGCGTCCTCCTCTCACTTTCCCCGTCCTCTGTTGGTTCTTCTTGCTTGGTCTAATTGGATTCGTTGCGCAGTTTGTTGGGTATGCTGGGATTAATTACAGCTCTCCTACTCTTGGCACGGCTATGCTCAACCTCCTTCCTGCCTTTACCTGCATACTGGCAGTCATCTTTAGAATGGAAACAGTTGACTGGAGAAGCTCCAGTACCCTAGCTAAATCCTTGGGAACAATGCTTTCAATTTCAGGGGCATTCATTGTGACTCTTTACAAGGGCCCTGCACTTTTGTTGACATCCTCAACTGATATATTGTCTTATAAACAACTTTTCTCACAACAGTCAAACTGGGTCATTGGAGGAATTCTCCTTTTGGTTTATTGTGTGTTGGCTTCATCATCTTATATTATACAGGCATCAGTCATAAAGAAATACCCAGCAGAGCTAATTATGGTCTTTTATTATTGTTTCTTTGTGGCTATTCAAGCTGTAGTAGTCTCTTTGATTGTAGAAACAGACCTAAGTGCTTGGAGCTTGAAACCTAAAATGAGGTTGATCGCTGTTGTATACTCGGCAGTTTTTGGCTCGACATTTACGATTGGTGTAACCACATGGTGCCTTCATAGGGCAGGGCCTGTTTTTATAGCTATGTTTAAGCCTTTGGGGATTATTGTTGCAGTTTCCATTGGTGTTACTTTCGTTGGGGATACTTTCTACCTTGGAAGTTTGGTAGGAGCAATTGTAATTGTCATTGGTTTTTATTCGGTGATGTGGGGCAAAGCCAATGAAGAGAAGATGGATGGTGGTGCTGAGACAAAGAGCTTGGCAACAAGCAACCAGCGGGTCCCTCTATTACAAAACACTCTTGAAGAAATATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0005887 GO:0005938 GO:0006810 GO:0007154 GO:0007165 GO:0008150 GO:0009719 GO:0009725 GO:0009733 GO:0009734 GO:0009755 GO:0009987 GO:0010033 GO:0016020 GO:0016021 GO:0022857 GO:0023052 GO:0031224 GO:0031226 GO:0032870 GO:0042221 GO:0044424 GO:0044425 GO:0044444 GO:0044459 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0051716 GO:0055085 GO:0065007 GO:0070887 GO:0071310 GO:0071365 GO:0071495 GO:0071944 GO:0099568

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EamA

Protein Analysis

351

Amino Acids

37.75

Weight (kDa)

8.96

Isoelectric Point (pI)

35.91

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001686)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g34870 FvH4_4g34870 FvH4_4g34870 FvH4_4g34870 FvH4_4g34870 FvH4_4g34870 FvH4_4g34870 FvH4_4g34870
malus_domestica	MD13G1088500.v1.1 MD13G1088700.v1.1 MD16G1088800.v1.1 MD16G1088900.v1.1
prunus_persica	Prupe.1G257200_v2.0.a1 Prupe.1G257300_v2.0.a1 Prupe.1G257400_v2.0.a1 Prupe.1G257500_v2.0.a1 Prupe.1G257600_v2.0.a1 Prupe.1G257700_v2.0.a1
pyrus_communis	pycom13g07640 pycom13g07650 pycom16g07610
rosa_chinensis	RchiOBHm_Chr4g0411271 RchiOBHm_Chr4g0444271 RchiOBHm_Chr4g0444291 RchiOBHm_Chr4g0444301
rosa_laevigata	RLG00000005843
rosa_multiflora	Rmu_sc0002841.1_g000015
rosa_roxburghii	Rroxscaffold_5G00384840 Rroxscaffold_5G00384850
rosa_rugosa	Rorug03G0072000 Rorug03G0072100 Rorug04G0351100 Rorug04G0351200 Rorug04G0351300 Rorug04G0351300 Rorug04G0351300 Rorug04G0351300 Rorug07G0109600
rosa_samantha	Rh1BG171600 Rh4AG412000 Rh4BG070500 Rh4BG423500 Rh4CG078800 Rh4DG418700 Rh4DG418800
rosa_wichuraiana	Rw2G039380 Rw4G013770 Rw4G035390 Rw5G040980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	495
Acc16I	TGCGCA	1 cut(s)	249
Acc36I	ACCTGC	1 cut(s)	338
AccB1I	GGYRCC	1 cut(s)	789
AccI	GTMKAC	2 cut(s)	92, 741
AccII	CGCG	1 cut(s)	184
AciI	CCGC	1 cut(s)	1015
AcsI	RAATTY	1 cut(s)	537
AdeI	CACNNNGTG	1 cut(s)	789
AfaI	GTAC	1 cut(s)	385
AfiI	CCNNNNNNNGG	3 cut(s)	29, 293, 799
AgsI	TTSAA	4 cut(s)	417, 659, 712, 1043
AluBI	AGCT	8 cut(s)	282, 378, 392, 619, 662, 708, 821, 996
AluI	AGCT	8 cut(s)	282, 378, 392, 619, 662, 708, 821, 996
Alw26I	GTCTC	2 cut(s)	676, 980
AlwNI	CAGNNNCTG	1 cut(s)	809
AoxI	GGCC	2 cut(s)	451, 806
ApaI	GGGCCC	1 cut(s)	455
ApeKI	GCWGC	3 cut(s)	14, 83, 140
ApoI	RAATTY	1 cut(s)	537
AseI	ATTAAT	1 cut(s)	273
AspLEI	GCGC	1 cut(s)	250
AspS9I	GGNCC	4 cut(s)	451, 452, 806, 1018
AsuHPI	GGTGA	1 cut(s)	952
AvaII	GGWCC	1 cut(s)	1018
BaeGI	GKGCMC	1 cut(s)	455
BanI	GGYRCC	1 cut(s)	789
BanII	GRGCYC	1 cut(s)	455
BarI	GAAGNNNNNNTAC	2 cut(s)	367, 399
BbsI	GAAGAC	1 cut(s)	112
BbvI	GCAGC	3 cut(s)	26, 95, 127
BccI	CCATC	2 cut(s)	964, 968
BceAI	ACGGC	1 cut(s)	315
BciVI	GTATCC	1 cut(s)	874
BcoDI	GTCTC	2 cut(s)	676, 980
BfaI	CTAG	1 cut(s)	389
BfmI	CTRYAG	2 cut(s)	24, 663
BfuAI	ACCTGC	1 cut(s)	338
BfuI	GTATCC	1 cut(s)	874
BisI	GCNGC	3 cut(s)	15, 84, 141
BlsI	GCNGC	3 cut(s)	16, 85, 142
Bme18I	GGWCC	1 cut(s)	1018
BmgT120I	GGNCC	4 cut(s)	451, 452, 806, 1018
BmiI	GGNNCC	4 cut(s)	453, 791, 1019, 1020
BmrI	ACTGGG	1 cut(s)	532
BmsI	GCATC	1 cut(s)	599
BmuI	ACTGGG	1 cut(s)	532
BpiI	GAAGAC	1 cut(s)	112
BplI	GAGNNNNNCTC	2 cut(s)	525, 557
BpmI	CTGGAG	3 cut(s)	75, 364, 391
BsaJI	CCNNGG	2 cut(s)	399, 892
BsaXI	ACNNNNNCTCC	4 cut(s)	48, 78, 900, 930
Bsc4I	CCNNNNNNNGG	3 cut(s)	29, 293, 799
Bse1I	ACTGG	5 cut(s)	100, 342, 374, 381, 527
BseDI	CCNNGG	2 cut(s)	399, 892
BseGI	GGATG	4 cut(s)	39, 147, 470, 979
BseLI	CCNNNNNNNGG	3 cut(s)	29, 293, 799
BseMII	CTCAG	2 cut(s)	36, 975
BseNI	ACTGG	5 cut(s)	100, 342, 374, 381, 527
BseRI	GAGGAG	2 cut(s)	143, 180
BseSI	GKGCMC	1 cut(s)	455
BseXI	GCAGC	3 cut(s)	26, 95, 127
BseYI	CCCAGC	2 cut(s)	266, 610
BsgI	GTGCAG	1 cut(s)	441
Bsh1236I	CGCG	1 cut(s)	184
BshFI	GGCC	2 cut(s)	453, 808
BshNI	GGYRCC	1 cut(s)	789
BslFI	GGGAC	1 cut(s)	1004
BslI	CCNNNNNNNGG	3 cut(s)	29, 293, 799
BsmAI	GTCTC	2 cut(s)	676, 980
BsmFI	GGGAC	1 cut(s)	1004
BsmI	GAATGC	1 cut(s)	428
BsnI	GGCC	2 cut(s)	453, 808
Bsp120I	GGGCCC	1 cut(s)	451
Bsp1286I	GDGCHC	1 cut(s)	455
Bsp143I	GATC	2 cut(s)	179, 729
BspACI	CCGC	1 cut(s)	1015
BspANI	GGCC	2 cut(s)	453, 808
BspCNI	CTCAG	2 cut(s)	37, 976
BspFNI	CGCG	1 cut(s)	184
BspLI	GGNNCC	4 cut(s)	453, 791, 1019, 1020
BspMI	ACCTGC	1 cut(s)	338
BspT107I	GGYRCC	1 cut(s)	789
BsrI	ACTGG	5 cut(s)	100, 342, 374, 381, 527
BssECI	CCNNGG	2 cut(s)	399, 892
BssMI	GATC	2 cut(s)	179, 729
BssNAI	GTATAC	1 cut(s)	742
BssT1I	CCWWGG	2 cut(s)	399, 892
Bst1107I	GTATAC	1 cut(s)	742
Bst4CI	ACNGT	2 cut(s)	364, 516
Bst6I	CTCTTC	1 cut(s)	957
BstDEI	CTNAG	4 cut(s)	45, 74, 695, 984
BstENI	CCTNNNNNAGG	1 cut(s)	27
BstF5I	GGATG	4 cut(s)	39, 147, 470, 979
BstFNI	CGCG	1 cut(s)	184
BstHHI	GCGC	1 cut(s)	250
BstKTI	GATC	2 cut(s)	182, 732
BstMAI	GTCTC	2 cut(s)	676, 980
BstMBI	GATC	2 cut(s)	179, 729
BstMWI	GCNNNNNNNGC	2 cut(s)	140, 659
BstSFI	CTRYAG	2 cut(s)	24, 663
BstSLI	GKGCMC	1 cut(s)	455
BstUI	CGCG	1 cut(s)	184
BstV1I	GCAGC	3 cut(s)	26, 95, 127
BstV2I	GAAGAC	1 cut(s)	112
BstZ17I	GTATAC	1 cut(s)	742
BsuI	GTATCC	1 cut(s)	874
BsuRI	GGCC	2 cut(s)	453, 808
BtsCI	GGATG	4 cut(s)	39, 147, 470, 979
BveI	ACCTGC	1 cut(s)	338
CaiI	CAGNNNCTG	1 cut(s)	809
CfoI	GCGC	1 cut(s)	250
Cfr13I	GGNCC	4 cut(s)	451, 452, 806, 1018
CseI	GACGC	1 cut(s)	173
Csp6I	GTAC	1 cut(s)	384
CviAII	CATG	3 cut(s)	88, 100, 786
CviQI	GTAC	1 cut(s)	384
DdeI	CTNAG	4 cut(s)	45, 74, 695, 984
DpnI	GATC	2 cut(s)	181, 731
DpnII	GATC	2 cut(s)	179, 729
DraIII	CACNNNGTG	1 cut(s)	789
Eam1104I	CTCTTC	1 cut(s)	957
EarI	CTCTTC	1 cut(s)	957
Eco130I	CCWWGG	2 cut(s)	399, 892
Eco24I	GRGCYC	1 cut(s)	455
Eco47I	GGWCC	1 cut(s)	1018
EcoNI	CCTNNNNNAGG	1 cut(s)	27
EcoO109I	RGGNCCY	4 cut(s)	451, 452, 806, 1018
EcoRI	GAATTC	1 cut(s)	537
EcoT14I	CCWWGG	2 cut(s)	399, 892
EcoT38I	GRGCYC	1 cut(s)	455
ErhI	CCWWGG	2 cut(s)	399, 892
FaeI	CATG	3 cut(s)	91, 103, 789
FaqI	GGGAC	1 cut(s)	1004
FatI	CATG	3 cut(s)	87, 99, 785
FauI	CCCGC	1 cut(s)	1008
FblI	GTMKAC	2 cut(s)	92, 741
Fnu4HI	GCNGC	3 cut(s)	15, 84, 141
FokI	GGATG	4 cut(s)	46, 134, 457, 986
FriOI	GRGCYC	1 cut(s)	455
Fsp4HI	GCNGC	3 cut(s)	15, 84, 141
FspBI	CTAG	1 cut(s)	389
FspI	TGCGCA	1 cut(s)	249
GlaI	GCGC	1 cut(s)	249
GluI	GCNGC	3 cut(s)	15, 84, 141
GsaI	CCCAGC	2 cut(s)	270, 614
GsuI	CTGGAG	3 cut(s)	75, 364, 391
HaeIII	GGCC	2 cut(s)	453, 808
HgaI	GACGC	1 cut(s)	173
HhaI	GCGC	1 cut(s)	250
Hin1II	CATG	3 cut(s)	91, 103, 789
Hin6I	GCGC	1 cut(s)	248
HinP1I	GCGC	1 cut(s)	248
HincII	GTYRAC	2 cut(s)	367, 468
HindII	GTYRAC	2 cut(s)	367, 468
HinfI	GANTC	2 cut(s)	240, 439
HphI	GGTGA	1 cut(s)	952
Hpy166II	GTNNAC	4 cut(s)	93, 367, 468, 742
Hpy188III	TCNNGA	1 cut(s)	1040
Hpy8I	GTNNAC	4 cut(s)	93, 367, 468, 742
HpyAV	CCTTC	3 cut(s)	181, 326, 803
HpyCH4III	ACNGT	2 cut(s)	364, 516
HpyCH4V	TGCA	4 cut(s)	14, 333, 458, 851
HpyF10VI	GCNNNNNNNGC	2 cut(s)	140, 659
HpyF3I	CTNAG	4 cut(s)	45, 74, 695, 984
Hsp92II	CATG	3 cut(s)	91, 103, 789
HspAI	GCGC	1 cut(s)	248
KflI	GGGWCCC	1 cut(s)	1018
Kzo9I	GATC	2 cut(s)	179, 729
LmnI	GCTCC	4 cut(s)	56, 383, 705, 908
Lsp1109I	GCAGC	3 cut(s)	26, 95, 127
LweI	GCATC	1 cut(s)	599
MaeI	CTAG	1 cut(s)	389
MaeIII	GTNAC	3 cut(s)	436, 778, 865
MalI	GATC	2 cut(s)	181, 731
MboI	GATC	2 cut(s)	179, 729
MboII	GAAGA	4 cut(s)	112, 211, 974, 979
MfeI	CAATTG	1 cut(s)	912
MhlI	GDGCHC	1 cut(s)	455
MluCI	AATT	7 cut(s)	234, 274, 417, 537, 621, 912, 918
MlyI	GAGTC	1 cut(s)	433
MmeI	TCCRAC	1 cut(s)	153
MseI	TTAA	2 cut(s)	273, 828
MslI	CAYNNNNRTG	1 cut(s)	302
MspA1I	CMGCKG	1 cut(s)	1015
MunI	CAATTG	1 cut(s)	912
Mva1269I	GAATGC	1 cut(s)	428
MvnI	CGCG	1 cut(s)	184
MwoI	GCNNNNNNNGC	2 cut(s)	140, 659
NdeII	GATC	2 cut(s)	179, 729
NlaIII	CATG	3 cut(s)	91, 103, 789
NlaIV	GGNNCC	4 cut(s)	453, 791, 1019, 1020
NmeAIII	GCCGAG	1 cut(s)	725
NmuCI	GTSAC	1 cut(s)	436
NsbI	TGCGCA	1 cut(s)	249
PcsI	WCGNNNNNNNCGW	1 cut(s)	767
PctI	GAATGC	1 cut(s)	428
PfeI	GAWTC	1 cut(s)	240
PkrI	GCNGC	3 cut(s)	16, 85, 142
PleI	GAGTC	1 cut(s)	433
PpsI	GAGTC	1 cut(s)	433
PpuMI	RGGWCCY	1 cut(s)	1018
PshBI	ATTAAT	1 cut(s)	273
PsiI	TTATAA	1 cut(s)	495
Psp5II	RGGWCCY	1 cut(s)	1018
PspFI	CCCAGC	2 cut(s)	266, 610
PspN4I	GGNNCC	4 cut(s)	453, 791, 1019, 1020
PspOMI	GGGCCC	1 cut(s)	451
PspPI	GGNCC	4 cut(s)	451, 452, 806, 1018
PspPPI	RGGWCCY	1 cut(s)	1018
PstNI	CAGNNNCTG	1 cut(s)	809
RsaI	GTAC	1 cut(s)	385
RsaNI	GTAC	1 cut(s)	384
RseI	CAYNNNNRTG	1 cut(s)	302
SaqAI	TTAA	2 cut(s)	273, 828
SatI	GCNGC	3 cut(s)	15, 84, 141
Sau3AI	GATC	2 cut(s)	179, 729
Sau96I	GGNCC	4 cut(s)	451, 452, 806, 1018
SchI	GAGTC	1 cut(s)	433
SduI	GDGCHC	1 cut(s)	455
SfaNI	GCATC	1 cut(s)	599
SfcI	CTRYAG	2 cut(s)	24, 663
SinI	GGWCC	1 cut(s)	1018
SmiMI	CAYNNNNRTG	1 cut(s)	302
Sse9I	AATT	7 cut(s)	234, 274, 417, 537, 621, 912, 918
SsiI	CCGC	1 cut(s)	1015
SspMI	CTAG	1 cut(s)	389
StyI	CCWWGG	2 cut(s)	399, 892
TaaI	ACNGT	2 cut(s)	364, 516
TaqI	TCGA	1 cut(s)	761
TasI	AATT	7 cut(s)	234, 274, 417, 537, 621, 912, 918
TfiI	GAWTC	1 cut(s)	240
Tru1I	TTAA	2 cut(s)	273, 828
Tru9I	TTAA	2 cut(s)	273, 828
TseFI	GTSAC	1 cut(s)	436
TseI	GCWGC	3 cut(s)	14, 83, 140
Tsp45I	GTSAC	1 cut(s)	436
TspDTI	ATGAA	4 cut(s)	421, 558, 785, 975
VpaK11BI	GGWCC	1 cut(s)	1018
VspI	ATTAAT	1 cut(s)	273
XagI	CCTNNNNNAGG	1 cut(s)	27
XapI	RAATTY	1 cut(s)	537
XmiI	GTMKAC	2 cut(s)	92, 741
XspI	CTAG	1 cut(s)	389

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.