Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr13

Orthogroup ID

OG0001686

Physical Location & Seq

Genomic Coordinates Reverse (-)

5054980 .. 5055829

Gene Structure 850 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom13g07650.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 486 bp

ATGTTTGCATTGCAGGCAACGGTCGTGAAGAAGTACCCCGCAATTTTGCTCTCAGTCTTTTTCCAATGCTTATTCGCAACCATTCAGTCTGCAATATTTGCTTTAATTGCAGTTAGAGATGCAAGTGCCTGGGAAATAAGGCTGGATGTGGGGTTGATTGCTGCTTTATACACTGGAATTGTTGCGACGGTTCTTTATTTCAGTGTAATTGTCTGGTGCGTAGAGAAGGTTGGAGCTTTTTATTGTTCTATGTTTAAGCCTATTGGCATCATTTTTGGCGTGATCATGGGTGCCATATTTTTGGGAGATTCAGTCTACATCGGAAGTTTGGTTGGTGCAGCCATAATCGTTACTGGATTTTATGCCATGATGTGGGGGAAGGCCACAGAAGAGAAGCTGATCGAAATAGAATCACTGGACCAAAATAAGCTCCCTTTGCTACAAAACGGGATACAAGACAAGAGAAACAGTAGTATTGGTGCGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0005887 GO:0005938 GO:0007154 GO:0007165 GO:0008150 GO:0009719 GO:0009725 GO:0009733 GO:0009734 GO:0009755 GO:0009987 GO:0010033 GO:0016020 GO:0016021 GO:0023052 GO:0031224 GO:0031226 GO:0032870 GO:0042221 GO:0044424 GO:0044425 GO:0044444 GO:0044459 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0070887 GO:0071310 GO:0071365 GO:0071495 GO:0071944 GO:0099568

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EamA

Protein Analysis

162

Amino Acids

17.52

Weight (kDa)

6.2

Isoelectric Point (pI)

31.56

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001686)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g34870 FvH4_4g34870 FvH4_4g34870 FvH4_4g34870 FvH4_4g34870 FvH4_4g34870 FvH4_4g34870 FvH4_4g34870
malus_domestica	MD13G1088500.v1.1 MD13G1088700.v1.1 MD16G1088800.v1.1 MD16G1088900.v1.1
prunus_persica	Prupe.1G257200_v2.0.a1 Prupe.1G257300_v2.0.a1 Prupe.1G257400_v2.0.a1 Prupe.1G257500_v2.0.a1 Prupe.1G257600_v2.0.a1 Prupe.1G257700_v2.0.a1
pyrus_communis	pycom13g07640 pycom13g07650 pycom16g07610
rosa_chinensis	RchiOBHm_Chr4g0411271 RchiOBHm_Chr4g0444271 RchiOBHm_Chr4g0444291 RchiOBHm_Chr4g0444301
rosa_laevigata	RLG00000005843
rosa_multiflora	Rmu_sc0002841.1_g000015
rosa_roxburghii	Rroxscaffold_5G00384840 Rroxscaffold_5G00384850
rosa_rugosa	Rorug03G0072000 Rorug03G0072100 Rorug04G0351100 Rorug04G0351200 Rorug04G0351300 Rorug04G0351300 Rorug04G0351300 Rorug04G0351300 Rorug07G0109600
rosa_samantha	Rh1BG171600 Rh4AG412000 Rh4BG070500 Rh4BG423500 Rh4CG078800 Rh4DG418700 Rh4DG418800
rosa_wichuraiana	Rw2G039380 Rw4G013770 Rw4G035390 Rw5G040980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	290
AccB7I	CCANNNNNTGG	1 cut(s)	372
AccI	GTMKAC	1 cut(s)	315
AciI	CCGC	1 cut(s)	39
AfaI	GTAC	1 cut(s)	35
AfiI	CCNNNNNNNGG	1 cut(s)	372
AjnI	CCWGG	1 cut(s)	128
AluBI	AGCT	3 cut(s)	236, 397, 430
AluI	AGCT	3 cut(s)	236, 397, 430
AoxI	GGCC	1 cut(s)	381
ApeKI	GCWGC	2 cut(s)	161, 338
AspS9I	GGNCC	1 cut(s)	418
AvaII	GGWCC	1 cut(s)	418
BanI	GGYRCC	1 cut(s)	290
BbvI	GCAGC	2 cut(s)	148, 350
BciT130I	CCWGG	1 cut(s)	130
BciVI	GTATCC	1 cut(s)	444
BclI	TGATCA	1 cut(s)	282
BfuI	GTATCC	1 cut(s)	444
BisI	GCNGC	2 cut(s)	162, 339
BlsI	GCNGC	2 cut(s)	163, 340
Bme1390I	CCNGG	1 cut(s)	130
Bme18I	GGWCC	1 cut(s)	418
BmgT120I	GGNCC	1 cut(s)	418
BmiI	GGNNCC	1 cut(s)	292
BmrFI	CCNGG	1 cut(s)	130
BmsI	GCATC	2 cut(s)	109, 276
BsaJI	CCNNGG	1 cut(s)	129
BsaXI	ACNNNNNCTCC	2 cut(s)	297, 327
Bsc4I	CCNNNNNNNGG	1 cut(s)	372
Bse1I	ACTGG	3 cut(s)	178, 358, 420
Bse3DI	GCAATG	1 cut(s)	8
BseBI	CCWGG	1 cut(s)	130
BseDI	CCNNGG	1 cut(s)	129
BseGI	GGATG	1 cut(s)	151
BseLI	CCNNNNNNNGG	1 cut(s)	372
BseMI	GCAATG	1 cut(s)	8
BseMII	CTCAG	1 cut(s)	66
BseNI	ACTGG	3 cut(s)	178, 358, 420
BseXI	GCAGC	2 cut(s)	148, 350
BsgI	GTGCAG	1 cut(s)	357
Bsh1285I	CGRYCG	1 cut(s)	24
BshFI	GGCC	1 cut(s)	383
BshNI	GGYRCC	1 cut(s)	290
BsiEI	CGRYCG	1 cut(s)	24
BslI	CCNNNNNNNGG	1 cut(s)	372
BsnI	GGCC	1 cut(s)	383
Bsp143I	GATC	2 cut(s)	282, 399
BspACI	CCGC	1 cut(s)	39
BspANI	GGCC	1 cut(s)	383
BspCNI	CTCAG	1 cut(s)	65
BspLI	GGNNCC	1 cut(s)	292
BspT107I	GGYRCC	1 cut(s)	290
BsrDI	GCAATG	1 cut(s)	8
BsrI	ACTGG	3 cut(s)	178, 358, 420
BssECI	CCNNGG	1 cut(s)	129
BssMI	GATC	2 cut(s)	282, 399
Bst2UI	CCWGG	1 cut(s)	130
Bst4CI	ACNGT	3 cut(s)	22, 190, 470
Bst6I	CTCTTC	1 cut(s)	384
BstAPI	GCANNNNNTGC	1 cut(s)	98
BstC8I	GCNNGC	1 cut(s)	15
BstDEI	CTNAG	1 cut(s)	52
BstF5I	GGATG	1 cut(s)	151
BstKTI	GATC	2 cut(s)	285, 402
BstMBI	GATC	2 cut(s)	282, 399
BstMCI	CGRYCG	1 cut(s)	24
BstMWI	GCNNNNNNNGC	4 cut(s)	14, 98, 107, 436
BstNI	CCWGG	1 cut(s)	130
BstSCI	CCNGG	1 cut(s)	128
BstV1I	GCAGC	2 cut(s)	148, 350
BstXI	CCANNNNNNTGG	1 cut(s)	301
BsuI	GTATCC	1 cut(s)	444
BsuRI	GGCC	1 cut(s)	383
BtsCI	GGATG	1 cut(s)	151
BtsIMutI	CAGTG	3 cut(s)	171, 208, 413
Cac8I	GCNNGC	1 cut(s)	15
Cfr13I	GGNCC	1 cut(s)	418
Csp6I	GTAC	1 cut(s)	34
CviAII	CATG	2 cut(s)	286, 367
CviJI	RGCY	7 cut(s)	142, 236, 259, 341, 383, 397, 430
CviKI_1	RGCY	7 cut(s)	142, 236, 259, 341, 383, 397, 430
CviQI	GTAC	1 cut(s)	34
DdeI	CTNAG	1 cut(s)	52
DpnI	GATC	2 cut(s)	284, 401
DpnII	GATC	2 cut(s)	282, 399
Eam1104I	CTCTTC	1 cut(s)	384
EarI	CTCTTC	1 cut(s)	384
Eco47I	GGWCC	1 cut(s)	418
EcoRII	CCWGG	1 cut(s)	128
FaeI	CATG	2 cut(s)	289, 370
FaiI	YATR	7 cut(s)	169, 251, 287, 296, 344, 363, 368
FatI	CATG	2 cut(s)	285, 366
FauI	CCCGC	1 cut(s)	46
FbaI	TGATCA	1 cut(s)	282
FblI	GTMKAC	1 cut(s)	315
Fnu4HI	GCNGC	2 cut(s)	162, 339
FokI	GGATG	1 cut(s)	158
Fsp4HI	GCNGC	2 cut(s)	162, 339
GluI	GCNGC	2 cut(s)	162, 339
HaeIII	GGCC	1 cut(s)	383
Hin1II	CATG	2 cut(s)	289, 370
HinfI	GANTC	2 cut(s)	308, 410
Hpy166II	GTNNAC	1 cut(s)	316
Hpy188I	TCNGA	1 cut(s)	323
Hpy188III	TCNNGA	1 cut(s)	25
Hpy8I	GTNNAC	1 cut(s)	316
Hpy99I	CGWCG	1 cut(s)	190
HpyAV	CCTTC	2 cut(s)	220, 373
HpyCH4III	ACNGT	3 cut(s)	22, 190, 470
HpyCH4V	TGCA	6 cut(s)	8, 13, 92, 110, 122, 338
HpyF10VI	GCNNNNNNNGC	4 cut(s)	14, 98, 107, 436
HpyF3I	CTNAG	1 cut(s)	52
Hsp92II	CATG	2 cut(s)	289, 370
Ksp22I	TGATCA	1 cut(s)	282
Kzo9I	GATC	2 cut(s)	282, 399
LmnI	GCTCC	2 cut(s)	233, 435
LpnPI	CCDG	7 cut(s)	115, 128, 142, 159, 199, 339, 401
Lsp1109I	GCAGC	2 cut(s)	148, 350
LweI	GCATC	2 cut(s)	109, 276
MaeIII	GTNAC	1 cut(s)	349
MalI	GATC	2 cut(s)	284, 401
MboI	GATC	2 cut(s)	282, 399
MboII	GAAGA	2 cut(s)	40, 401
MluCI	AATT	4 cut(s)	42, 105, 177, 207
MmeI	TCCRAC	1 cut(s)	211
MseI	TTAA	2 cut(s)	104, 255
MspR9I	CCNGG	1 cut(s)	130
MvaI	CCWGG	1 cut(s)	130
MwoI	GCNNNNNNNGC	4 cut(s)	14, 98, 107, 436
NdeII	GATC	2 cut(s)	282, 399
NlaIII	CATG	2 cut(s)	289, 370
NlaIV	GGNNCC	1 cut(s)	292
PfeI	GAWTC	2 cut(s)	308, 410
PflMI	CCANNNNNTGG	1 cut(s)	372
PkrI	GCNGC	2 cut(s)	163, 340
Psp6I	CCWGG	1 cut(s)	128
PspGI	CCWGG	1 cut(s)	128
PspN4I	GGNNCC	1 cut(s)	292
PspPI	GGNCC	1 cut(s)	418
RsaI	GTAC	1 cut(s)	35
RsaNI	GTAC	1 cut(s)	34
SaqAI	TTAA	2 cut(s)	104, 255
SatI	GCNGC	2 cut(s)	162, 339
Sau3AI	GATC	2 cut(s)	282, 399
Sau96I	GGNCC	1 cut(s)	418
ScrFI	CCNGG	1 cut(s)	130
SetI	ASST	4 cut(s)	231, 238, 399, 432
SfaNI	GCATC	2 cut(s)	109, 276
SinI	GGWCC	1 cut(s)	418
Sse9I	AATT	4 cut(s)	42, 105, 177, 207
SsiI	CCGC	1 cut(s)	39
SspI	AATATT	1 cut(s)	96
StyD4I	CCNGG	1 cut(s)	128
TaaI	ACNGT	3 cut(s)	22, 190, 470
TaqI	TCGA	1 cut(s)	402
TasI	AATT	4 cut(s)	42, 105, 177, 207
TfiI	GAWTC	2 cut(s)	308, 410
Tru1I	TTAA	2 cut(s)	104, 255
Tru9I	TTAA	2 cut(s)	104, 255
TscAI	CASTG	3 cut(s)	178, 208, 420
TseI	GCWGC	2 cut(s)	161, 338
TspRI	CASTG	3 cut(s)	178, 208, 420
Van91I	CCANNNNNTGG	1 cut(s)	372
VpaK11BI	GGWCC	1 cut(s)	418
XmiI	GTMKAC	1 cut(s)	315

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.