Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr13

Orthogroup ID

OG0001686

Physical Location & Seq

Genomic Coordinates Reverse (-)

5050955 .. 5053081

Gene Structure 2127 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom13g07640.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1065 bp

ATGGGGAGGATCGCAACACTGCCCATTGTTGGGATGGTGTTGGCTGAGTGCGCACAAGCTGGGCTAATTATAATAAGCAAAATAGCCATGTCGAATGGCATGAGCAACCTCATCTTCCTCTGCTACTCCAACGCCCTCGCCGCCCTCATCCTCCTCCCAATATCTCTAGTCTTCCACAGATCTGAGCGTCCTCCTCTCACTATCTCGATAATCGGATGGTTCTTCTTGCTTGGTCTAATTGGATTCACGGCGCAGTTTCTTGGGTATGCTGGGATTAATTATAGTTCTCCTACTCTGAGTACAGCTATGCTCAACCTCATTCCAGCTTTTACCTTTGTACTTGCAGTTATCTTCAGAATGGAAAGAATTGACATGAGAAGCTTCAGTAGCCTAGCTAAAACATTGGGAACAATAGTTTCAATTTCAGGGGCTTTCATTGTGACTCTTTACAAGGGACCCCCAATTCTGAAGACATCCTCAACTGTTATGACTGATGTGTTGTCTCATAAACAACTTATCTCAGAACGGTCAAACTGGGTACTTGGAGGAGTGTGTGTAGCGGCTAATTGCGTGTTGGCCTCAGCTTGGATTATCGTACAGGCATCAGTCCTAAAGAAATACCGCGCTGAGCTGATCATGGTCTTTTATTATTGCTTCTTTGTTGCTATTCAATCTGTAGTAGTCTCTTCAATTTTAGAAAGAGACCTGCGTTCGTGGGAATTAACTCCTAAAATCAGGTGGATCGCTGTTCTATACTCGGCAGTGTTTGGCTCTGCATTCCAGGTTGGTGTATCTACTTGGTGCCTTAGAAGGACAGGGCCTGTTTTTGTAGCTATGTTCAAGCCTTTGGGGATTATCGTTACAGTTTTCATTGGTGTTACCTTCTTAGGGGATACTTTCTACCTTGGGAGTTTGATAGGAGCAATTGTTATTGTCATTGGATTTTATTCTGTGATGTGGGGCAAAGCCAACGAAGAGAAGATGGATGAGGATGCAGGGGAAGAGAGCCTGGCATCAATCAAACAGCGGGTCCCTCTATTGCAAGGCCACATTGAAGAAATATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0005887 GO:0005938 GO:0006810 GO:0007154 GO:0007165 GO:0008150 GO:0009719 GO:0009725 GO:0009733 GO:0009734 GO:0009755 GO:0009987 GO:0010033 GO:0016020 GO:0016021 GO:0022857 GO:0023052 GO:0031224 GO:0031226 GO:0032870 GO:0042221 GO:0044424 GO:0044425 GO:0044444 GO:0044459 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0051716 GO:0055085 GO:0065007 GO:0070887 GO:0071310 GO:0071365 GO:0071495 GO:0071944 GO:0099568

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EamA

Protein Analysis

355

Amino Acids

38.75

Weight (kDa)

9.0

Isoelectric Point (pI)

40.54

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EamA	PF00892	9 - 148	1.8e-10	EamA-like transporter family
EamA	PF00892	184 - 318	5.8e-09	EamA-like transporter family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001686)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g34870 FvH4_4g34870 FvH4_4g34870 FvH4_4g34870 FvH4_4g34870 FvH4_4g34870 FvH4_4g34870 FvH4_4g34870
malus_domestica	MD13G1088500.v1.1 MD13G1088700.v1.1 MD16G1088800.v1.1 MD16G1088900.v1.1
prunus_persica	Prupe.1G257200_v2.0.a1 Prupe.1G257300_v2.0.a1 Prupe.1G257400_v2.0.a1 Prupe.1G257500_v2.0.a1 Prupe.1G257600_v2.0.a1 Prupe.1G257700_v2.0.a1
pyrus_communis	pycom13g07640 pycom13g07650 pycom16g07610
rosa_chinensis	RchiOBHm_Chr4g0411271 RchiOBHm_Chr4g0444271 RchiOBHm_Chr4g0444291 RchiOBHm_Chr4g0444301
rosa_laevigata	RLG00000005843
rosa_multiflora	Rmu_sc0002841.1_g000015
rosa_roxburghii	Rroxscaffold_5G00384840 Rroxscaffold_5G00384850
rosa_rugosa	Rorug03G0072000 Rorug03G0072100 Rorug04G0351100 Rorug04G0351200 Rorug04G0351300 Rorug04G0351300 Rorug04G0351300 Rorug04G0351300 Rorug07G0109600
rosa_samantha	Rh1BG171600 Rh4AG412000 Rh4BG070500 Rh4BG423500 Rh4CG078800 Rh4DG418700 Rh4DG418800
rosa_wichuraiana	Rw2G039380 Rw4G013770 Rw4G035390 Rw5G040980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	71
Acc16I	TGCGCA	1 cut(s)	52
Acc36I	ACCTGC	1 cut(s)	714
AccB1I	GGYRCC	1 cut(s)	801
AccII	CGCG	1 cut(s)	624
AciI	CCGC	4 cut(s)	141, 560, 622, 1027
AclWI	GGATC	2 cut(s)	17, 749
AcuI	CTGAAG	3 cut(s)	337, 367, 488
AfaI	GTAC	4 cut(s)	301, 339, 540, 597
AfiI	CCNNNNNNNGG	4 cut(s)	29, 30, 585, 888
AgsI	TTSAA	5 cut(s)	420, 671, 690, 841, 1055
AjnI	CCWGG	2 cut(s)	780, 1008
AluBI	AGCT	8 cut(s)	59, 305, 326, 381, 395, 584, 631, 833
AluI	AGCT	8 cut(s)	59, 305, 326, 381, 395, 584, 631, 833
Alw26I	GTCTC	3 cut(s)	507, 688, 696
AlwI	GGATC	2 cut(s)	17, 749
AlwNI	CAGNNNCTG	1 cut(s)	821
AoxI	GGCC	3 cut(s)	576, 818, 1045
ArsI	GACNNNNNNTTYG	2 cut(s)	1014, 1046
AseI	ATTAAT	1 cut(s)	276
AspLEI	GCGC	3 cut(s)	53, 253, 626
AspS9I	GGNCC	3 cut(s)	455, 818, 1030
AvaII	GGWCC	2 cut(s)	455, 1030
BanI	GGYRCC	1 cut(s)	801
BbsI	GAAGAC	2 cut(s)	163, 476
BbvCI	CCTCAGC	1 cut(s)	580
BccI	CCATC	3 cut(s)	28, 210, 976
BceAI	ACGGC	1 cut(s)	264
BciT130I	CCWGG	2 cut(s)	782, 1010
BciVI	GTATCC	1 cut(s)	886
BclI	TGATCA	1 cut(s)	633
BcoDI	GTCTC	3 cut(s)	507, 688, 696
BfaI	CTAG	2 cut(s)	167, 392
BfmI	CTRYAG	1 cut(s)	675
BfuAI	ACCTGC	1 cut(s)	714
BfuI	GTATCC	1 cut(s)	886
BglII	AGATCT	1 cut(s)	179
BisI	GCNGC	2 cut(s)	141, 561
BlpI	GCTNAGC	1 cut(s)	627
BlsI	GCNGC	2 cut(s)	142, 562
Bme1390I	CCNGG	2 cut(s)	782, 1010
Bme18I	GGWCC	2 cut(s)	455, 1030
BmgT120I	GGNCC	3 cut(s)	455, 818, 1030
BmiI	GGNNCC	5 cut(s)	456, 457, 803, 1031, 1032
BmrFI	CCNGG	2 cut(s)	782, 1010
BmrI	ACTGGG	1 cut(s)	544
BmsI	GCATC	3 cut(s)	611, 982, 1022
BmuI	ACTGGG	1 cut(s)	544
BpiI	GAAGAC	2 cut(s)	163, 476
Bpu10I	CCTNAGC	1 cut(s)	580
Bpu1102I	GCTNAGC	1 cut(s)	627
BsaI	GGTCTC	1 cut(s)	696
BsaJI	CCNNGG	1 cut(s)	904
BsaXI	ACNNNNNCTCC	4 cut(s)	540, 570, 912, 942
Bsc4I	CCNNNNNNNGG	4 cut(s)	29, 30, 585, 888
Bse1I	ACTGG	1 cut(s)	539
BseBI	CCWGG	2 cut(s)	782, 1010
BseDI	CCNNGG	1 cut(s)	904
BseGI	GGATG	6 cut(s)	39, 147, 221, 473, 991, 997
BseLI	CCNNNNNNNGG	4 cut(s)	29, 30, 585, 888
BseMII	CTCAG	6 cut(s)	36, 174, 287, 534, 594, 618
BseNI	ACTGG	1 cut(s)	539
BseRI	GAGGAG	3 cut(s)	143, 183, 561
BseYI	CCCAGC	2 cut(s)	59, 269
Bsh1236I	CGCG	1 cut(s)	624
BshFI	GGCC	3 cut(s)	578, 820, 1047
BshNI	GGYRCC	1 cut(s)	801
BslFI	GGGAC	2 cut(s)	468, 1016
BslI	CCNNNNNNNGG	4 cut(s)	29, 30, 585, 888
BsmAI	GTCTC	3 cut(s)	507, 688, 696
BsmFI	GGGAC	2 cut(s)	468, 1016
BsmI	GAATGC	1 cut(s)	776
BsnI	GGCC	3 cut(s)	578, 820, 1047
Bso31I	GGTCTC	1 cut(s)	696
Bsp143I	GATC	4 cut(s)	9, 179, 633, 741
Bsp1720I	GCTNAGC	1 cut(s)	627
BspACI	CCGC	4 cut(s)	141, 560, 622, 1027
BspANI	GGCC	3 cut(s)	578, 820, 1047
BspCNI	CTCAG	6 cut(s)	37, 175, 288, 533, 593, 619
BspFNI	CGCG	1 cut(s)	624
BspLI	GGNNCC	5 cut(s)	456, 457, 803, 1031, 1032
BspMI	ACCTGC	1 cut(s)	714
BspPI	GGATC	2 cut(s)	17, 749
BspT107I	GGYRCC	1 cut(s)	801
BspTNI	GGTCTC	1 cut(s)	696
BsrI	ACTGG	1 cut(s)	539
BssECI	CCNNGG	1 cut(s)	904
BssMI	GATC	4 cut(s)	9, 179, 633, 741
BssT1I	CCWWGG	1 cut(s)	904
Bst2UI	CCWGG	2 cut(s)	782, 1010
Bst4CI	ACNGT	3 cut(s)	484, 528, 865
Bst6I	CTCTTC	3 cut(s)	691, 969, 996
BstDEI	CTNAG	8 cut(s)	45, 183, 296, 520, 580, 627, 806, 886
BstF5I	GGATG	6 cut(s)	39, 147, 221, 473, 991, 997
BstFNI	CGCG	1 cut(s)	624
BstHHI	GCGC	3 cut(s)	53, 253, 626
BstKTI	GATC	4 cut(s)	12, 182, 636, 744
BstMAI	GTCTC	3 cut(s)	507, 688, 696
BstMBI	GATC	4 cut(s)	9, 179, 633, 741
BstMWI	GCNNNNNNNGC	3 cut(s)	50, 140, 387
BstNI	CCWGG	2 cut(s)	782, 1010
BstSCI	CCNGG	2 cut(s)	780, 1008
BstSFI	CTRYAG	1 cut(s)	675
BstUI	CGCG	1 cut(s)	624
BstV2I	GAAGAC	2 cut(s)	163, 476
BstX2I	RGATCY	1 cut(s)	179
BstYI	RGATCY	1 cut(s)	179
BsuI	GTATCC	1 cut(s)	886
BsuRI	GGCC	3 cut(s)	578, 820, 1047
BtsCI	GGATG	6 cut(s)	39, 147, 221, 473, 991, 997
BtsI	GCAGTG	2 cut(s)	17, 768
BtsIMutI	CAGTG	2 cut(s)	17, 768
BveI	ACCTGC	1 cut(s)	714
CaiI	CAGNNNCTG	1 cut(s)	821
CfoI	GCGC	3 cut(s)	53, 253, 626
Cfr13I	GGNCC	3 cut(s)	455, 818, 1030
CseI	GACGC	1 cut(s)	176
Csp6I	GTAC	4 cut(s)	300, 338, 539, 596
CviAII	CATG	4 cut(s)	88, 100, 373, 637
CviQI	GTAC	4 cut(s)	300, 338, 539, 596
DdeI	CTNAG	8 cut(s)	45, 183, 296, 520, 580, 627, 806, 886
DpnI	GATC	4 cut(s)	11, 181, 635, 743
DpnII	GATC	4 cut(s)	9, 179, 633, 741
Eam1104I	CTCTTC	3 cut(s)	691, 969, 996
EarI	CTCTTC	3 cut(s)	691, 969, 996
Eco130I	CCWWGG	1 cut(s)	904
Eco31I	GGTCTC	1 cut(s)	696
Eco47I	GGWCC	2 cut(s)	455, 1030
Eco57I	CTGAAG	3 cut(s)	337, 367, 488
EcoO109I	RGGNCCY	3 cut(s)	455, 818, 1030
EcoRII	CCWGG	2 cut(s)	780, 1008
EcoT14I	CCWWGG	1 cut(s)	904
ErhI	CCWWGG	1 cut(s)	904
FaeI	CATG	4 cut(s)	91, 103, 376, 640
FaqI	GGGAC	2 cut(s)	468, 1016
FatI	CATG	4 cut(s)	87, 99, 372, 636
FauI	CCCGC	1 cut(s)	1020
FbaI	TGATCA	1 cut(s)	633
Fnu4HI	GCNGC	2 cut(s)	141, 561
FokI	GGATG	6 cut(s)	46, 134, 228, 460, 998, 1004
Fsp4HI	GCNGC	2 cut(s)	141, 561
FspAI	RTGCGCAY	1 cut(s)	52
FspBI	CTAG	2 cut(s)	167, 392
FspI	TGCGCA	1 cut(s)	52
GlaI	GCGC	3 cut(s)	52, 252, 625
GluI	GCNGC	2 cut(s)	141, 561
GsaI	CCCAGC	2 cut(s)	63, 273
HaeIII	GGCC	3 cut(s)	578, 820, 1047
HgaI	GACGC	1 cut(s)	176
HhaI	GCGC	3 cut(s)	53, 253, 626
Hin1II	CATG	4 cut(s)	91, 103, 376, 640
Hin6I	GCGC	3 cut(s)	51, 251, 624
HinP1I	GCGC	3 cut(s)	51, 251, 624
HindIII	AAGCTT	1 cut(s)	379
HinfI	GANTC	2 cut(s)	243, 442
Hpy188I	TCNGA	6 cut(s)	184, 215, 297, 356, 468, 523
Hpy188III	TCNNGA	1 cut(s)	205
HpyAV	CCTTC	2 cut(s)	804, 892
HpyCH4III	ACNGT	3 cut(s)	484, 528, 865
HpyCH4V	TGCA	4 cut(s)	344, 776, 995, 1042
HpyF10VI	GCNNNNNNNGC	3 cut(s)	50, 140, 387
HpyF3I	CTNAG	8 cut(s)	45, 183, 296, 520, 580, 627, 806, 886
Hsp92II	CATG	4 cut(s)	91, 103, 376, 640
HspAI	GCGC	3 cut(s)	51, 251, 624
KflI	GGGWCCC	2 cut(s)	455, 1030
Ksp22I	TGATCA	1 cut(s)	633
Kzo9I	GATC	4 cut(s)	9, 179, 633, 741
LmnI	GCTCC	1 cut(s)	920
LweI	GCATC	3 cut(s)	611, 982, 1022
MaeI	CTAG	2 cut(s)	167, 392
MaeIII	GTNAC	3 cut(s)	439, 859, 877
MalI	GATC	4 cut(s)	11, 181, 635, 743
MboI	GATC	4 cut(s)	9, 179, 633, 741
MboII	GAAGA	9 cut(s)	106, 163, 214, 343, 481, 678, 986, 991, 1013
MfeI	CAATTG	1 cut(s)	924
MflI	RGATCY	1 cut(s)	179
MlyI	GAGTC	1 cut(s)	436
MmeI	TCCRAC	1 cut(s)	153
MseI	TTAA	2 cut(s)	276, 722
MspA1I	CMGCKG	1 cut(s)	1027
MspR9I	CCNGG	2 cut(s)	782, 1010
MunI	CAATTG	1 cut(s)	924
Mva1269I	GAATGC	1 cut(s)	776
MvaI	CCWGG	2 cut(s)	782, 1010
MvnI	CGCG	1 cut(s)	624
MwoI	GCNNNNNNNGC	3 cut(s)	50, 140, 387
NdeII	GATC	4 cut(s)	9, 179, 633, 741
NlaIII	CATG	4 cut(s)	91, 103, 376, 640
NlaIV	GGNNCC	5 cut(s)	456, 457, 803, 1031, 1032
NmeAIII	GCCGAG	1 cut(s)	737
NmuCI	GTSAC	1 cut(s)	439
NsbI	TGCGCA	1 cut(s)	52
PctI	GAATGC	1 cut(s)	776
PfeI	GAWTC	1 cut(s)	243
PkrI	GCNGC	2 cut(s)	142, 562
PleI	GAGTC	1 cut(s)	436
PpsI	GAGTC	1 cut(s)	436
PpuMI	RGGWCCY	2 cut(s)	455, 1030
PshBI	ATTAAT	1 cut(s)	276
PsiI	TTATAA	1 cut(s)	71
Psp5II	RGGWCCY	2 cut(s)	455, 1030
Psp6I	CCWGG	2 cut(s)	780, 1008
PspFI	CCCAGC	2 cut(s)	59, 269
PspGI	CCWGG	2 cut(s)	780, 1008
PspN4I	GGNNCC	5 cut(s)	456, 457, 803, 1031, 1032
PspPI	GGNCC	3 cut(s)	455, 818, 1030
PspPPI	RGGWCCY	2 cut(s)	455, 1030
PstNI	CAGNNNCTG	1 cut(s)	821
PsuI	RGATCY	1 cut(s)	179
RsaI	GTAC	4 cut(s)	301, 339, 540, 597
RsaNI	GTAC	4 cut(s)	300, 338, 539, 596
SaqAI	TTAA	2 cut(s)	276, 722
SatI	GCNGC	2 cut(s)	141, 561
Sau3AI	GATC	4 cut(s)	9, 179, 633, 741
Sau96I	GGNCC	3 cut(s)	455, 818, 1030
SchI	GAGTC	1 cut(s)	436
ScrFI	CCNGG	2 cut(s)	782, 1010
SfaNI	GCATC	3 cut(s)	611, 982, 1022
SfcI	CTRYAG	1 cut(s)	675
SinI	GGWCC	2 cut(s)	455, 1030
SsiI	CCGC	4 cut(s)	141, 560, 622, 1027
SspMI	CTAG	2 cut(s)	167, 392
StyD4I	CCNGG	2 cut(s)	780, 1008
StyI	CCWWGG	1 cut(s)	904
TaaI	ACNGT	3 cut(s)	484, 528, 865
TaqI	TCGA	2 cut(s)	92, 206
TatI	WGTACW	2 cut(s)	299, 337
TauI	GCSGC	2 cut(s)	143, 563
TfiI	GAWTC	1 cut(s)	243
Tru1I	TTAA	2 cut(s)	276, 722
Tru9I	TTAA	2 cut(s)	276, 722
TscAI	CASTG	2 cut(s)	24, 768
TseFI	GTSAC	1 cut(s)	439
Tsp45I	GTSAC	1 cut(s)	439
TspDTI	ATGAA	2 cut(s)	424, 859
TspRI	CASTG	2 cut(s)	24, 768
VpaK11BI	GGWCC	2 cut(s)	455, 1030
VspI	ATTAAT	1 cut(s)	276
XcmI	CCANNNNNNNNNTGG	1 cut(s)	31
XspI	CTAG	2 cut(s)	167, 392

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.