Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0001686

Physical Location & Seq

Genomic Coordinates Forward (+)

64084208 .. 64086210

Gene Structure 2003 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00384850.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1059 bp

ATGGCGAAGATTGCAGCACTACCAATAGTGGGGATGGTCTTAGCTGAGTGTGCCCAAGCTGGGTTAATGATAGTAAGCAAAGCAGCCATGTCTACTGGTATGAACAACCTCATCTTTGTCTGCTACTCCAACGCTCTTGCCGCTTTTGTTCTTCTCCCAACTTGTCTATTCTTTCACAGATCAACAGAGCGGCCTCCGATCACTTCCTCTATTCTCTGTTGGTTCTTCTTGCTTGGTCTACTTGGGTGTATAGCTCAGTTGATTGGGTATGCTGGGATTAATTACAGCTCTCCTACTCTTGGCACGGCTATGCTCAACCTTATTCCAGCTTTCACTTTTGTACTTGCAGTTATATTCAGAATGGAAAAAATTGATGGGAGAAGCTGCAGTACCCTAGCTAAAACCTTGGGAACAATAGTTTCAATATCAGGGGCTTTCATTGTGACTCTTTACAAGGGACCCCCACTTCTGATGACAGCCTCAGTTGATTTATTGTCTCACAATCAACTTTTCTTGCCACAGTCGAATTGGGTCATTGGAGGAATGCTCCTTGGGTTTCATTGTGTGGTGGCTGCAGCATTTCTTATCATACAGGGCATCAGTATTAAAAAATACCCAGCAGAGCTCATTATAGTCTTTTACTATTGCTTCTTTGTGGCTATTCAATCTTTAGTGGTGTTGTGGTTTGTGGAAAGAGACTTAAGCGCTTGGGCCTTAAACCCTAAGTTAAGGTTGTTTGCGGTTTTGTACTCAGGAGTTTTTGGCTCAGCATTCCAGGTTGGTGTATCTACATGGTGTCTTCACAGGACAGGGCCGGTTTTTGTATCTATGTTCAAGCCTTTAGGTATTGTAGTTGCAGCTGCCATTGGTGTTATCTTCTTGGGGGATACTTTCTACCTTGGAAGTTTGATAGGAGCAATTGTAATTGTCATTGGATTTTACTCTGTGATATGGGGCAAAGCCAATGAGGAGAAGATGGATGATGATGCAGGGGCAAGGAGTTTGGCATCAAAGAAACAACGGATTCCATTACTGCAAACCATTATTGAAGAAATCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0005887 GO:0005938 GO:0006810 GO:0007154 GO:0007165 GO:0008150 GO:0009719 GO:0009725 GO:0009733 GO:0009734 GO:0009755 GO:0009987 GO:0010033 GO:0016020 GO:0016021 GO:0022857 GO:0023052 GO:0031224 GO:0031226 GO:0032870 GO:0042221 GO:0044424 GO:0044425 GO:0044444 GO:0044459 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0051716 GO:0055085 GO:0065007 GO:0070887 GO:0071310 GO:0071365 GO:0071495 GO:0071944 GO:0099568

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EamA

Protein Analysis

352

Amino Acids

38.12

Weight (kDa)

8.82

Isoelectric Point (pI)

33.03

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EamA	PF00892	10 - 149	7.5e-09	EamA-like transporter family
EamA	PF00892	181 - 316	9.2e-09	EamA-like transporter family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001686)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g34870 FvH4_4g34870 FvH4_4g34870 FvH4_4g34870 FvH4_4g34870 FvH4_4g34870 FvH4_4g34870 FvH4_4g34870
malus_domestica	MD13G1088500.v1.1 MD13G1088700.v1.1 MD16G1088800.v1.1 MD16G1088900.v1.1
prunus_persica	Prupe.1G257200_v2.0.a1 Prupe.1G257300_v2.0.a1 Prupe.1G257400_v2.0.a1 Prupe.1G257500_v2.0.a1 Prupe.1G257600_v2.0.a1 Prupe.1G257700_v2.0.a1
pyrus_communis	pycom13g07640 pycom13g07650 pycom16g07610
rosa_chinensis	RchiOBHm_Chr4g0411271 RchiOBHm_Chr4g0444271 RchiOBHm_Chr4g0444291 RchiOBHm_Chr4g0444301
rosa_laevigata	RLG00000005843
rosa_multiflora	Rmu_sc0002841.1_g000015
rosa_roxburghii	Rroxscaffold_5G00384840 Rroxscaffold_5G00384850
rosa_rugosa	Rorug03G0072000 Rorug03G0072100 Rorug04G0351100 Rorug04G0351200 Rorug04G0351300 Rorug04G0351300 Rorug04G0351300 Rorug04G0351300 Rorug07G0109600
rosa_samantha	Rh1BG171600 Rh4AG412000 Rh4BG070500 Rh4BG423500 Rh4CG078800 Rh4DG418700 Rh4DG418800
rosa_wichuraiana	Rw2G039380 Rw4G013770 Rw4G035390 Rw5G040980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	190
AccI	GTMKAC	2 cut(s)	92, 238
AciI	CCGC	3 cut(s)	141, 190, 740
AfaI	GTAC	3 cut(s)	342, 391, 749
AfeI	AGCGCT	1 cut(s)	706
AfiI	CCNNNNNNNGG	3 cut(s)	29, 60, 299
AflII	CTTAAG	1 cut(s)	700
AgsI	TTSAA	4 cut(s)	423, 665, 835, 1049
AjnI	CCWGG	1 cut(s)	774
AluBI	AGCT	9 cut(s)	44, 59, 254, 288, 329, 384, 398, 625, 860
AluI	AGCT	9 cut(s)	44, 59, 254, 288, 329, 384, 398, 625, 860
Alw21I	GWGCWC	1 cut(s)	627
Alw26I	GTCTC	2 cut(s)	501, 690
Aor51HI	AGCGCT	1 cut(s)	706
AoxI	GGCC	3 cut(s)	191, 711, 812
ApeKI	GCWGC	7 cut(s)	14, 83, 384, 572, 575, 857, 860
AseI	ATTAAT	1 cut(s)	279
AspLEI	GCGC	1 cut(s)	707
AspS9I	GGNCC	3 cut(s)	458, 711, 812
AvaII	GGWCC	1 cut(s)	458
BaeGI	GKGCMC	1 cut(s)	55
BanII	GRGCYC	1 cut(s)	627
BarI	GAAGNNNNNNTAC	2 cut(s)	373, 405
BbsI	GAAGAC	1 cut(s)	791
Bbv12I	GWGCWC	1 cut(s)	627
BbvI	GCAGC	7 cut(s)	26, 95, 371, 559, 587, 847, 869
BccI	CCATC	3 cut(s)	28, 368, 970
BceAI	ACGGC	1 cut(s)	321
BciT130I	CCWGG	1 cut(s)	776
BciVI	GTATCC	1 cut(s)	880
BcoDI	GTCTC	2 cut(s)	501, 690
BfaI	CTAG	2 cut(s)	395, 1057
BfmI	CTRYAG	2 cut(s)	385, 573
BfoI	RGCGCY	1 cut(s)	708
BfrI	CTTAAG	1 cut(s)	700
BfuI	GTATCC	1 cut(s)	880
BisI	GCNGC	9 cut(s)	15, 84, 141, 191, 385, 573, 576, 858, 861
BlpI	GCTNAGC	1 cut(s)	766
BlsI	GCNGC	9 cut(s)	16, 85, 142, 192, 386, 574, 577, 859, 862
Bme1390I	CCNGG	1 cut(s)	776
Bme18I	GGWCC	1 cut(s)	458
BmgT120I	GGNCC	3 cut(s)	458, 711, 812
BmiI	GGNNCC	2 cut(s)	459, 460
BmrFI	CCNGG	1 cut(s)	776
BmsI	GCATC	3 cut(s)	606, 976, 1016
BpiI	GAAGAC	1 cut(s)	791
BplI	GAGNNNNNCTC	2 cut(s)	531, 563
Bpu1102I	GCTNAGC	1 cut(s)	766
BsaJI	CCNNGG	3 cut(s)	405, 550, 898
BsaXI	ACNNNNNCTCC	2 cut(s)	906, 936
Bsc4I	CCNNNNNNNGG	3 cut(s)	29, 60, 299
Bse118I	RCCGGY	1 cut(s)	814
Bse1I	ACTGG	1 cut(s)	100
BseBI	CCWGG	1 cut(s)	776
BseDI	CCNNGG	3 cut(s)	405, 550, 898
BseGI	GGATG	2 cut(s)	39, 985
BseLI	CCNNNNNNNGG	3 cut(s)	29, 60, 299
BseMII	CTCAG	5 cut(s)	36, 269, 495, 765, 780
BseNI	ACTGG	1 cut(s)	100
BseRI	GAGGAG	1 cut(s)	983
BseSI	GKGCMC	1 cut(s)	55
BseXI	GCAGC	7 cut(s)	26, 95, 371, 559, 587, 847, 869
BseYI	CCCAGC	3 cut(s)	59, 272, 616
BshFI	GGCC	3 cut(s)	193, 713, 814
BsiHKAI	GWGCWC	1 cut(s)	627
BsiSI	CCGG	1 cut(s)	815
BslFI	GGGAC	1 cut(s)	471
BslI	CCNNNNNNNGG	3 cut(s)	29, 60, 299
BsmAI	GTCTC	2 cut(s)	501, 690
BsmFI	GGGAC	1 cut(s)	471
BsmI	GAATGC	2 cut(s)	549, 770
BsnI	GGCC	3 cut(s)	193, 713, 814
Bsp1286I	GDGCHC	2 cut(s)	55, 627
Bsp143I	GATC	2 cut(s)	179, 198
Bsp1720I	GCTNAGC	1 cut(s)	766
BspACI	CCGC	3 cut(s)	141, 190, 740
BspANI	GGCC	3 cut(s)	193, 713, 814
BspCNI	CTCAG	5 cut(s)	37, 268, 494, 764, 779
BspLI	GGNNCC	2 cut(s)	459, 460
BspMAI	CTGCAG	2 cut(s)	389, 577
BspTI	CTTAAG	1 cut(s)	700
BsrBI	CCGCTC	1 cut(s)	190
BsrFI	RCCGGY	1 cut(s)	814
BsrI	ACTGG	1 cut(s)	100
BssAI	RCCGGY	1 cut(s)	814
BssECI	CCNNGG	3 cut(s)	405, 550, 898
BssMI	GATC	2 cut(s)	179, 198
BssT1I	CCWWGG	3 cut(s)	405, 550, 898
Bst2UI	CCWGG	1 cut(s)	776
Bst4CI	ACNGT	1 cut(s)	522
BstAFI	CTTAAG	1 cut(s)	700
BstDEI	CTNAG	7 cut(s)	40, 45, 255, 481, 723, 751, 766
BstF5I	GGATG	2 cut(s)	39, 985
BstH2I	RGCGCY	1 cut(s)	708
BstHHI	GCGC	1 cut(s)	707
BstKTI	GATC	2 cut(s)	182, 201
BstMAI	GTCTC	2 cut(s)	501, 690
BstMBI	GATC	2 cut(s)	179, 198
BstMWI	GCNNNNNNNGC	3 cut(s)	11, 50, 140
BstNI	CCWGG	1 cut(s)	776
BstSCI	CCNGG	1 cut(s)	774
BstSFI	CTRYAG	2 cut(s)	385, 573
BstSLI	GKGCMC	1 cut(s)	55
BstV1I	GCAGC	7 cut(s)	26, 95, 371, 559, 587, 847, 869
BstV2I	GAAGAC	1 cut(s)	791
BsuI	GTATCC	1 cut(s)	880
BsuRI	GGCC	3 cut(s)	193, 713, 814
BtsCI	GGATG	2 cut(s)	39, 985
CfoI	GCGC	1 cut(s)	707
Cfr10I	RCCGGY	1 cut(s)	814
Cfr13I	GGNCC	3 cut(s)	458, 711, 812
Csp6I	GTAC	3 cut(s)	341, 390, 748
CviAII	CATG	2 cut(s)	88, 792
CviQI	GTAC	3 cut(s)	341, 390, 748
DdeI	CTNAG	7 cut(s)	40, 45, 255, 481, 723, 751, 766
DpnI	GATC	2 cut(s)	181, 200
DpnII	GATC	2 cut(s)	179, 198
Ecl136II	GAGCTC	1 cut(s)	625
Eco130I	CCWWGG	3 cut(s)	405, 550, 898
Eco24I	GRGCYC	1 cut(s)	627
Eco47I	GGWCC	1 cut(s)	458
Eco47III	AGCGCT	1 cut(s)	706
Eco53kI	GAGCTC	1 cut(s)	625
EcoICRI	GAGCTC	1 cut(s)	625
EcoO109I	RGGNCCY	1 cut(s)	458
EcoRII	CCWGG	1 cut(s)	774
EcoT14I	CCWWGG	3 cut(s)	405, 550, 898
EcoT38I	GRGCYC	1 cut(s)	627
ErhI	CCWWGG	3 cut(s)	405, 550, 898
FaeI	CATG	2 cut(s)	91, 795
FaqI	GGGAC	1 cut(s)	471
FatI	CATG	2 cut(s)	87, 791
FblI	GTMKAC	2 cut(s)	92, 238
Fnu4HI	GCNGC	9 cut(s)	15, 84, 141, 191, 385, 573, 576, 858, 861
FokI	GGATG	2 cut(s)	46, 992
FriOI	GRGCYC	1 cut(s)	627
Fsp4HI	GCNGC	9 cut(s)	15, 84, 141, 191, 385, 573, 576, 858, 861
FspBI	CTAG	2 cut(s)	395, 1057
GlaI	GCGC	1 cut(s)	706
GluI	GCNGC	9 cut(s)	15, 84, 141, 191, 385, 573, 576, 858, 861
GsaI	CCCAGC	3 cut(s)	63, 276, 620
HaeII	RGCGCY	1 cut(s)	708
HaeIII	GGCC	3 cut(s)	193, 713, 814
HapII	CCGG	1 cut(s)	815
HhaI	GCGC	1 cut(s)	707
Hin1II	CATG	2 cut(s)	91, 795
Hin6I	GCGC	1 cut(s)	705
HinP1I	GCGC	1 cut(s)	705
HinfI	GANTC	2 cut(s)	445, 1024
HpaII	CCGG	1 cut(s)	815
Hpy166II	GTNNAC	2 cut(s)	93, 239
Hpy188I	TCNGA	3 cut(s)	198, 359, 471
Hpy188III	TCNNGA	1 cut(s)	753
Hpy8I	GTNNAC	2 cut(s)	93, 239
HpyCH4III	ACNGT	1 cut(s)	522
HpyCH4V	TGCA	7 cut(s)	14, 347, 387, 575, 857, 989, 1036
HpyF10VI	GCNNNNNNNGC	3 cut(s)	11, 50, 140
HpyF3I	CTNAG	7 cut(s)	40, 45, 255, 481, 723, 751, 766
Hsp92II	CATG	2 cut(s)	91, 795
HspAI	GCGC	1 cut(s)	705
KflI	GGGWCCC	1 cut(s)	458
Kzo9I	GATC	2 cut(s)	179, 198
LmnI	GCTCC	2 cut(s)	552, 914
Lsp1109I	GCAGC	7 cut(s)	26, 95, 371, 559, 587, 847, 869
LweI	GCATC	3 cut(s)	606, 976, 1016
MaeI	CTAG	2 cut(s)	395, 1057
MaeIII	GTNAC	1 cut(s)	442
MalI	GATC	2 cut(s)	181, 200
MbiI	CCGCTC	1 cut(s)	190
MboI	GATC	2 cut(s)	179, 198
MboII	GAAGA	6 cut(s)	19, 143, 217, 791, 868, 985
MfeI	CAATTG	1 cut(s)	918
MhlI	GDGCHC	2 cut(s)	55, 627
MluCI	AATT	5 cut(s)	280, 369, 526, 918, 924
MlyI	GAGTC	1 cut(s)	439
MmeI	TCCRAC	1 cut(s)	153
MnlI	CCTC	6 cut(s)	119, 204, 217, 490, 533, 961
MseI	TTAA	6 cut(s)	65, 279, 606, 701, 716, 728
MslI	CAYNNNNRTG	1 cut(s)	308
MspA1I	CMGCKG	1 cut(s)	860
MspCI	CTTAAG	1 cut(s)	700
MspI	CCGG	1 cut(s)	815
MspR9I	CCNGG	1 cut(s)	776
MunI	CAATTG	1 cut(s)	918
Mva1269I	GAATGC	2 cut(s)	549, 770
MvaI	CCWGG	1 cut(s)	776
MwoI	GCNNNNNNNGC	3 cut(s)	11, 50, 140
NdeII	GATC	2 cut(s)	179, 198
NlaIII	CATG	2 cut(s)	91, 795
NlaIV	GGNNCC	2 cut(s)	459, 460
NmuCI	GTSAC	1 cut(s)	442
PctI	GAATGC	2 cut(s)	549, 770
PfeI	GAWTC	1 cut(s)	1024
PkrI	GCNGC	9 cut(s)	16, 85, 142, 192, 386, 574, 577, 859, 862
PleI	GAGTC	1 cut(s)	439
PpsI	GAGTC	1 cut(s)	439
PpuMI	RGGWCCY	1 cut(s)	458
PshBI	ATTAAT	1 cut(s)	279
Psp124BI	GAGCTC	1 cut(s)	627
Psp5II	RGGWCCY	1 cut(s)	458
Psp6I	CCWGG	1 cut(s)	774
PspFI	CCCAGC	3 cut(s)	59, 272, 616
PspGI	CCWGG	1 cut(s)	774
PspN4I	GGNNCC	2 cut(s)	459, 460
PspPI	GGNCC	3 cut(s)	458, 711, 812
PspPPI	RGGWCCY	1 cut(s)	458
PstI	CTGCAG	2 cut(s)	389, 577
PvuII	CAGCTG	1 cut(s)	860
RsaI	GTAC	3 cut(s)	342, 391, 749
RsaNI	GTAC	3 cut(s)	341, 390, 748
RseI	CAYNNNNRTG	1 cut(s)	308
SacI	GAGCTC	1 cut(s)	627
SaqAI	TTAA	6 cut(s)	65, 279, 606, 701, 716, 728
SatI	GCNGC	9 cut(s)	15, 84, 141, 191, 385, 573, 576, 858, 861
Sau3AI	GATC	2 cut(s)	179, 198
Sau96I	GGNCC	3 cut(s)	458, 711, 812
SchI	GAGTC	1 cut(s)	439
ScrFI	CCNGG	1 cut(s)	776
SduI	GDGCHC	2 cut(s)	55, 627
SfaNI	GCATC	3 cut(s)	606, 976, 1016
SfcI	CTRYAG	2 cut(s)	385, 573
SinI	GGWCC	1 cut(s)	458
SmiMI	CAYNNNNRTG	1 cut(s)	308
SmlI	CTYRAG	1 cut(s)	700
SmoI	CTYRAG	1 cut(s)	700
Sse9I	AATT	5 cut(s)	280, 369, 526, 918, 924
SsiI	CCGC	3 cut(s)	141, 190, 740
SspMI	CTAG	2 cut(s)	395, 1057
SstI	GAGCTC	1 cut(s)	627
StyD4I	CCNGG	1 cut(s)	774
StyI	CCWWGG	3 cut(s)	405, 550, 898
TaaI	ACNGT	1 cut(s)	522
TaqI	TCGA	1 cut(s)	524
TasI	AATT	5 cut(s)	280, 369, 526, 918, 924
TatI	WGTACW	2 cut(s)	340, 747
TauI	GCSGC	2 cut(s)	143, 193
TfiI	GAWTC	1 cut(s)	1024
Tru1I	TTAA	6 cut(s)	65, 279, 606, 701, 716, 728
Tru9I	TTAA	6 cut(s)	65, 279, 606, 701, 716, 728
TseFI	GTSAC	1 cut(s)	442
TseI	GCWGC	7 cut(s)	14, 83, 384, 572, 575, 857, 860
Tsp45I	GTSAC	1 cut(s)	442
TspDTI	ATGAA	3 cut(s)	116, 427, 548
TspGWI	ACGGA	1 cut(s)	1036
Vha464I	CTTAAG	1 cut(s)	700
VpaK11BI	GGWCC	1 cut(s)	458
VspI	ATTAAT	1 cut(s)	279
XcmI	CCANNNNNNNNNTGG	1 cut(s)	525
XmiI	GTMKAC	2 cut(s)	92, 238
XspI	CTAG	2 cut(s)	395, 1057

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.