Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr16

Orthogroup ID

OG0001686

Physical Location & Seq

Genomic Coordinates Reverse (-)

4971108 .. 4973446

Gene Structure 2339 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom16g07610.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1050 bp

ATGAACATGGAGGGTTTTCTGCCATTTATTGGAATGGTGATCGCGATGATGGTTCAAACTGGCAGTATGGTGGTAAACAAAGCAGCCATGTCCAAAGGGACCAACGCCTACATAATCGTAGTCTATGCCAACGCCGTCTCCGCCCTCATTCTTCTCCCTTCCGTTCTCATCTTCCACAGATCGGAGCGCCCTCCCCTTACATTCTCCATCCTATGCAAAATCTTCTTGCTAGCACTGTTTTGTTGTACATCGCAAATATTTGGAAATATTGGCATAGAATACAGCTCTCCCACACTTAGCACGGCCATGCTTAACCTCATCCCAGCTTTTACTTTCATACTTGCCATCATTTTCAGGATGGAAAGAGTTTACTGGAGAAGCTCAAGCAGCCAAGCAAAAGTTTTGGGAACCATAGTATCAATCACAGGAGCATTTGTTGTAACATTTTACAAAGGCCTACCAATCATACGGCTATCATCATCACTTGCTAGTTCACTCAACCAACTGATCCTTTCCTCATCGAAATCAAACTGGATCCTCGGAGGGCTTTTTCTTGCAGCTGACGCCTTGTCAACTTCTTTATGGTACATTCTGCAGGCAACAATCGTTAAGAAGTACCCTGCAATTGTGTTCATTGTCTTTTTCCAATGCTTATTCGCGACCATTCAGTCTGCAGCATTTACTGTAATTGCAGTTAGAGGTGCAAGTGCCTGGGAATTAAGGCTGGATGTGGGGATCATTGCTATTTTATACACAGGAATTGTTTCGACGGTTCTCCGATACAGTTTAGTCACCTGGTGTGTGAAGAAAGCTGGAGCTTTTTATTGTTCTATGTTTAAGCCTCTTGGAATCATTTTTGGTGTGATCATGGGTATCATATTTTTGGGAGATTCAGTCTATCTTGGAAGCTTAGTTGGTGCAGCGATAATTGTTACTGGATTTTATGCCATGATGTGGGGAAAGGCCAAAGAAGAGAAGCTGATCGATATCGAATCACTAGACCAAAACAAGCTCCCTTTGCTACAAAACGGCTTACAAGAGAAGCAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0005887 GO:0005938 GO:0007154 GO:0007165 GO:0008150 GO:0009719 GO:0009725 GO:0009733 GO:0009734 GO:0009755 GO:0009987 GO:0010033 GO:0016020 GO:0016021 GO:0023052 GO:0031224 GO:0031226 GO:0032870 GO:0042221 GO:0044424 GO:0044425 GO:0044444 GO:0044459 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0070887 GO:0071310 GO:0071365 GO:0071495 GO:0071944 GO:0099568

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EamA

Protein Analysis

350

Amino Acids

38.15

Weight (kDa)

9.41

Isoelectric Point (pI)

38.67

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001686)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g34870 FvH4_4g34870 FvH4_4g34870 FvH4_4g34870 FvH4_4g34870 FvH4_4g34870 FvH4_4g34870 FvH4_4g34870
malus_domestica	MD13G1088500.v1.1 MD13G1088700.v1.1 MD16G1088800.v1.1 MD16G1088900.v1.1
prunus_persica	Prupe.1G257200_v2.0.a1 Prupe.1G257300_v2.0.a1 Prupe.1G257400_v2.0.a1 Prupe.1G257500_v2.0.a1 Prupe.1G257600_v2.0.a1 Prupe.1G257700_v2.0.a1
pyrus_communis	pycom13g07640 pycom13g07650 pycom16g07610
rosa_chinensis	RchiOBHm_Chr4g0411271 RchiOBHm_Chr4g0444271 RchiOBHm_Chr4g0444291 RchiOBHm_Chr4g0444301
rosa_laevigata	RLG00000005843
rosa_multiflora	Rmu_sc0002841.1_g000015
rosa_roxburghii	Rroxscaffold_5G00384840 Rroxscaffold_5G00384850
rosa_rugosa	Rorug03G0072000 Rorug03G0072100 Rorug04G0351100 Rorug04G0351200 Rorug04G0351300 Rorug04G0351300 Rorug04G0351300 Rorug04G0351300 Rorug07G0109600
rosa_samantha	Rh1BG171600 Rh4AG412000 Rh4BG070500 Rh4BG423500 Rh4CG078800 Rh4DG418700 Rh4DG418800
rosa_wichuraiana	Rw2G039380 Rw4G013770 Rw4G035390 Rw5G040980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	667
AccB7I	CCANNNNNTGG	2 cut(s)	29, 954
AccII	CGCG	2 cut(s)	44, 659
AciI	CCGC	1 cut(s)	141
AclWI	GGATC	4 cut(s)	502, 529, 542, 743
AcoI	YGGCCR	1 cut(s)	303
AcyI	GRCGYC	1 cut(s)	564
AdeI	CACNNNGTG	1 cut(s)	798
AfaI	GTAC	3 cut(s)	247, 587, 617
AfiI	CCNNNNNNNGG	3 cut(s)	29, 181, 954
AgsI	TTSAA	1 cut(s)	56
AhdI	GACNNNNNGTC	1 cut(s)	568
AjnI	CCWGG	2 cut(s)	710, 794
AluBI	AGCT	9 cut(s)	285, 326, 381, 560, 812, 818, 909, 979, 1012
AluI	AGCT	9 cut(s)	285, 326, 381, 560, 812, 818, 909, 979, 1012
Alw26I	GTCTC	1 cut(s)	142
AlwI	GGATC	4 cut(s)	502, 529, 542, 743
AoxI	GGCC	3 cut(s)	303, 454, 963
ApeKI	GCWGC	5 cut(s)	83, 387, 557, 674, 920
Asp700I	GAANNNNTTC	1 cut(s)	763
AspLEI	GCGC	1 cut(s)	189
AspS9I	GGNCC	1 cut(s)	99
AsuHPI	GGTGA	2 cut(s)	49, 784
AsuNHI	GCTAGC	1 cut(s)	229
AvaII	GGWCC	1 cut(s)	99
BaeI	ACNNNNGTAYC	2 cut(s)	399, 432
BamHI	GGATCC	1 cut(s)	534
BbvI	GCAGC	5 cut(s)	95, 399, 569, 686, 932
BccI	CCATC	4 cut(s)	43, 215, 352, 353
BceAI	ACGGC	4 cut(s)	119, 318, 485, 1045
BciT130I	CCWGG	2 cut(s)	712, 796
BclI	TGATCA	1 cut(s)	864
BcoDI	GTCTC	1 cut(s)	142
BfaI	CTAG	3 cut(s)	230, 489, 998
BfmI	CTRYAG	2 cut(s)	593, 672
BfoI	RGCGCY	1 cut(s)	190
BisI	GCNGC	5 cut(s)	84, 388, 558, 675, 921
BlsI	GCNGC	5 cut(s)	85, 389, 559, 676, 922
Bme1390I	CCNGG	2 cut(s)	712, 796
Bme18I	GGWCC	1 cut(s)	99
BmeRI	GACNNNNNGTC	1 cut(s)	568
BmgT120I	GGNCC	1 cut(s)	99
BmiI	GGNNCC	3 cut(s)	100, 409, 536
BmrFI	CCNGG	2 cut(s)	712, 796
BmtI	GCTAGC	1 cut(s)	233
BpmI	CTGGAG	2 cut(s)	394, 834
BpuEI	CTTGAG	1 cut(s)	367
Bsa29I	ATCGAT	1 cut(s)	984
BsaBI	GATNNNNATC	1 cut(s)	986
BsaHI	GRCGYC	1 cut(s)	564
BsaJI	CCNNGG	2 cut(s)	538, 711
BsaXI	ACNNNNNCTCC	6 cut(s)	122, 152, 420, 450, 879, 909
Bsc4I	CCNNNNNNNGG	3 cut(s)	29, 181, 954
Bse1I	ACTGG	4 cut(s)	64, 377, 536, 940
Bse3DI	GCAATG	1 cut(s)	738
Bse8I	GATNNNNATC	1 cut(s)	986
BseBI	CCWGG	2 cut(s)	712, 796
BseCI	ATCGAT	1 cut(s)	984
BseDI	CCNNGG	2 cut(s)	538, 711
BseGI	GGATG	4 cut(s)	207, 318, 363, 733
BseJI	GATNNNNATC	1 cut(s)	986
BseLI	CCNNNNNNNGG	3 cut(s)	29, 181, 954
BseMI	GCAATG	1 cut(s)	738
BseNI	ACTGG	4 cut(s)	64, 377, 536, 940
BseXI	GCAGC	5 cut(s)	95, 399, 569, 686, 932
BseYI	CCCAGC	1 cut(s)	322
BsgI	GTGCAG	1 cut(s)	939
Bsh1236I	CGCG	2 cut(s)	44, 659
BshFI	GGCC	3 cut(s)	305, 456, 965
BshVI	ATCGAT	1 cut(s)	984
BslFI	GGGAC	1 cut(s)	112
BslI	CCNNNNNNNGG	3 cut(s)	29, 181, 954
BsmAI	GTCTC	1 cut(s)	142
BsmBI	CGTCTC	1 cut(s)	142
BsmFI	GGGAC	1 cut(s)	112
BsnI	GGCC	3 cut(s)	305, 456, 965
Bsp1407I	TGTACA	1 cut(s)	245
Bsp143I	GATC	7 cut(s)	39, 179, 507, 534, 735, 864, 981
Bsp68I	TCGCGA	2 cut(s)	44, 659
BspACI	CCGC	1 cut(s)	141
BspANI	GGCC	3 cut(s)	305, 456, 965
BspDI	ATCGAT	1 cut(s)	984
BspFNI	CGCG	2 cut(s)	44, 659
BspLI	GGNNCC	3 cut(s)	100, 409, 536
BspMAI	CTGCAG	2 cut(s)	597, 676
BspOI	GCTAGC	1 cut(s)	233
BspPI	GGATC	4 cut(s)	502, 529, 542, 743
BsrDI	GCAATG	1 cut(s)	738
BsrGI	TGTACA	1 cut(s)	245
BsrI	ACTGG	4 cut(s)	64, 377, 536, 940
BssECI	CCNNGG	2 cut(s)	538, 711
BssMI	GATC	7 cut(s)	39, 179, 507, 534, 735, 864, 981
BssNI	GRCGYC	1 cut(s)	564
Bst2UI	CCWGG	2 cut(s)	712, 796
Bst4CI	ACNGT	4 cut(s)	237, 685, 772, 785
Bst6I	CTCTTC	1 cut(s)	966
BstACI	GRCGYC	1 cut(s)	564
BstAUI	TGTACA	1 cut(s)	245
BstC8I	GCNNGC	2 cut(s)	231, 597
BstDEI	CTNAG	2 cut(s)	296, 910
BstF5I	GGATG	4 cut(s)	207, 318, 363, 733
BstFNI	CGCG	2 cut(s)	44, 659
BstH2I	RGCGCY	1 cut(s)	190
BstHHI	GCGC	1 cut(s)	189
BstKTI	GATC	7 cut(s)	42, 182, 510, 537, 738, 867, 984
BstMAI	GTCTC	1 cut(s)	142
BstMBI	GATC	7 cut(s)	39, 179, 507, 534, 735, 864, 981
BstMWI	GCNNNNNNNGC	4 cut(s)	140, 387, 563, 1018
BstNI	CCWGG	2 cut(s)	712, 796
BstSCI	CCNGG	2 cut(s)	710, 794
BstSFI	CTRYAG	2 cut(s)	593, 672
BstUI	CGCG	2 cut(s)	44, 659
BstV1I	GCAGC	5 cut(s)	95, 399, 569, 686, 932
BstX2I	RGATCY	1 cut(s)	534
BstYI	RGATCY	1 cut(s)	534
Bsu15I	ATCGAT	1 cut(s)	984
BsuRI	GGCC	3 cut(s)	305, 456, 965
BsuTUI	ATCGAT	1 cut(s)	984
BtgZI	GCGATG	2 cut(s)	59, 234
BtsCI	GGATG	4 cut(s)	207, 318, 363, 733
BtsIMutI	CAGTG	1 cut(s)	233
BtuMI	TCGCGA	2 cut(s)	44, 659
Cac8I	GCNNGC	2 cut(s)	231, 597
CfoI	GCGC	1 cut(s)	189
Cfr13I	GGNCC	1 cut(s)	99
ClaI	ATCGAT	1 cut(s)	984
CseI	GACGC	1 cut(s)	572
CsiI	ACCWGGT	1 cut(s)	794
Csp6I	GTAC	3 cut(s)	246, 586, 616
CviAII	CATG	5 cut(s)	7, 88, 307, 868, 949
CviQI	GTAC	3 cut(s)	246, 586, 616
DdeI	CTNAG	2 cut(s)	296, 910
DpnI	GATC	7 cut(s)	41, 181, 509, 536, 737, 866, 983
DpnII	GATC	7 cut(s)	39, 179, 507, 534, 735, 864, 981
DraIII	CACNNNGTG	1 cut(s)	798
DrdI	GACNNNNNNGTC	1 cut(s)	667
DriI	GACNNNNNGTC	1 cut(s)	568
DseDI	GACNNNNNNGTC	1 cut(s)	667
EaeI	YGGCCR	1 cut(s)	303
Eam1104I	CTCTTC	1 cut(s)	966
Eam1105I	GACNNNNNGTC	1 cut(s)	568
EarI	CTCTTC	1 cut(s)	966
EciI	GGCGGA	1 cut(s)	130
Eco147I	AGGCCT	1 cut(s)	456
Eco32I	GATATC	1 cut(s)	988
Eco47I	GGWCC	1 cut(s)	99
EcoRII	CCWGG	2 cut(s)	710, 794
EcoRV	GATATC	1 cut(s)	988
Esp3I	CGTCTC	1 cut(s)	142
FaeI	CATG	5 cut(s)	10, 91, 310, 871, 952
FaqI	GGGAC	1 cut(s)	112
FatI	CATG	5 cut(s)	6, 87, 306, 867, 948
FbaI	TGATCA	1 cut(s)	864
Fnu4HI	GCNGC	5 cut(s)	84, 388, 558, 675, 921
FokI	GGATG	4 cut(s)	194, 305, 370, 740
Fsp4HI	GCNGC	5 cut(s)	84, 388, 558, 675, 921
FspBI	CTAG	3 cut(s)	230, 489, 998
GlaI	GCGC	1 cut(s)	188
GluI	GCNGC	5 cut(s)	84, 388, 558, 675, 921
GsaI	CCCAGC	1 cut(s)	326
GsuI	CTGGAG	2 cut(s)	394, 834
HaeII	RGCGCY	1 cut(s)	190
HaeIII	GGCC	3 cut(s)	305, 456, 965
HgaI	GACGC	1 cut(s)	572
HhaI	GCGC	1 cut(s)	189
Hin1I	GRCGYC	1 cut(s)	564
Hin1II	CATG	5 cut(s)	10, 91, 310, 871, 952
Hin6I	GCGC	1 cut(s)	187
HinP1I	GCGC	1 cut(s)	187
HincII	GTYRAC	1 cut(s)	573
HindII	GTYRAC	1 cut(s)	573
HindIII	AAGCTT	1 cut(s)	907
HinfI	GANTC	3 cut(s)	849, 890, 992
HphI	GGTGA	2 cut(s)	49, 784
Hpy166II	GTNNAC	4 cut(s)	76, 370, 494, 573
Hpy188I	TCNGA	3 cut(s)	184, 542, 779
Hpy188III	TCNNGA	3 cut(s)	43, 355, 658
Hpy8I	GTNNAC	4 cut(s)	76, 370, 494, 573
Hpy99I	CGWCG	1 cut(s)	772
HpyAV	CCTTC	1 cut(s)	168
HpyCH4III	ACNGT	4 cut(s)	237, 685, 772, 785
HpyCH4V	TGCA	8 cut(s)	216, 557, 595, 623, 674, 692, 704, 920
HpyF10VI	GCNNNNNNNGC	4 cut(s)	140, 387, 563, 1018
HpyF3I	CTNAG	2 cut(s)	296, 910
Hsp92I	GRCGYC	1 cut(s)	564
Hsp92II	CATG	5 cut(s)	10, 91, 310, 871, 952
HspAI	GCGC	1 cut(s)	187
Ksp22I	TGATCA	1 cut(s)	864
Kzo9I	GATC	7 cut(s)	39, 179, 507, 534, 735, 864, 981
LmnI	GCTCC	4 cut(s)	184, 428, 815, 1017
Lsp1109I	GCAGC	5 cut(s)	95, 399, 569, 686, 932
MabI	ACCWGGT	1 cut(s)	794
MaeI	CTAG	3 cut(s)	230, 489, 998
MaeIII	GTNAC	3 cut(s)	439, 790, 931
MalI	GATC	7 cut(s)	41, 181, 509, 536, 737, 866, 983
MboI	GATC	7 cut(s)	39, 179, 507, 534, 735, 864, 981
MboII	GAAGA	5 cut(s)	143, 163, 214, 817, 983
MfeI	CAATTG	1 cut(s)	624
MflI	RGATCY	1 cut(s)	534
MluCI	AATT	5 cut(s)	624, 687, 716, 759, 927
MnlI	CCTC	9 cut(s)	4, 155, 201, 326, 526, 536, 548, 692, 852
MroXI	GAANNNNTTC	1 cut(s)	763
MseI	TTAA	4 cut(s)	312, 609, 719, 837
MslI	CAYNNNNRTG	1 cut(s)	305
MspA1I	CMGCKG	1 cut(s)	560
MspR9I	CCNGG	2 cut(s)	712, 796
MunI	CAATTG	1 cut(s)	624
MvaI	CCWGG	2 cut(s)	712, 796
MvnI	CGCG	2 cut(s)	44, 659
MwoI	GCNNNNNNNGC	4 cut(s)	140, 387, 563, 1018
NdeII	GATC	7 cut(s)	39, 179, 507, 534, 735, 864, 981
NheI	GCTAGC	1 cut(s)	229
NlaIII	CATG	5 cut(s)	10, 91, 310, 871, 952
NlaIV	GGNNCC	3 cut(s)	100, 409, 536
NmuCI	GTSAC	1 cut(s)	790
NruI	TCGCGA	2 cut(s)	44, 659
PceI	AGGCCT	1 cut(s)	456
PdmI	GAANNNNTTC	1 cut(s)	763
PfeI	GAWTC	3 cut(s)	849, 890, 992
PflMI	CCANNNNNTGG	2 cut(s)	29, 954
PkrI	GCNGC	5 cut(s)	85, 389, 559, 676, 922
Psp6I	CCWGG	2 cut(s)	710, 794
PspFI	CCCAGC	1 cut(s)	322
PspGI	CCWGG	2 cut(s)	710, 794
PspN4I	GGNNCC	3 cut(s)	100, 409, 536
PspPI	GGNCC	1 cut(s)	99
PstI	CTGCAG	2 cut(s)	597, 676
PsuI	RGATCY	1 cut(s)	534
PvuII	CAGCTG	1 cut(s)	560
RruI	TCGCGA	2 cut(s)	44, 659
RsaI	GTAC	3 cut(s)	247, 587, 617
RsaNI	GTAC	3 cut(s)	246, 586, 616
RseI	CAYNNNNRTG	1 cut(s)	305
SaqAI	TTAA	4 cut(s)	312, 609, 719, 837
SatI	GCNGC	5 cut(s)	84, 388, 558, 675, 921
Sau3AI	GATC	7 cut(s)	39, 179, 507, 534, 735, 864, 981
Sau96I	GGNCC	1 cut(s)	99
ScrFI	CCNGG	2 cut(s)	712, 796
SexAI	ACCWGGT	1 cut(s)	794
SfcI	CTRYAG	2 cut(s)	593, 672
SinI	GGWCC	1 cut(s)	99
SmiMI	CAYNNNNRTG	1 cut(s)	305
SmlI	CTYRAG	1 cut(s)	382
SmoI	CTYRAG	1 cut(s)	382
Sse9I	AATT	5 cut(s)	624, 687, 716, 759, 927
SseBI	AGGCCT	1 cut(s)	456
SsiI	CCGC	1 cut(s)	141
SspI	AATATT	2 cut(s)	258, 268
SspMI	CTAG	3 cut(s)	230, 489, 998
StuI	AGGCCT	1 cut(s)	456
StyD4I	CCNGG	2 cut(s)	710, 794
TaaI	ACNGT	4 cut(s)	237, 685, 772, 785
TaqI	TCGA	4 cut(s)	521, 767, 984, 990
TasI	AATT	5 cut(s)	624, 687, 716, 759, 927
TatI	WGTACW	1 cut(s)	245
TfiI	GAWTC	3 cut(s)	849, 890, 992
Tru1I	TTAA	4 cut(s)	312, 609, 719, 837
Tru9I	TTAA	4 cut(s)	312, 609, 719, 837
TscAI	CASTG	1 cut(s)	240
TseFI	GTSAC	1 cut(s)	790
TseI	GCWGC	5 cut(s)	83, 387, 557, 674, 920
Tsp45I	GTSAC	1 cut(s)	790
TspDTI	ATGAA	3 cut(s)	17, 325, 622
TspGWI	ACGGA	1 cut(s)	151
TspRI	CASTG	1 cut(s)	240
Van91I	CCANNNNNTGG	2 cut(s)	29, 954
VpaK11BI	GGWCC	1 cut(s)	99
XmnI	GAANNNNTTC	1 cut(s)	763
XspI	CTAG	3 cut(s)	230, 489, 998

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.