Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4B

Orthogroup ID

OG0001686

Physical Location & Seq

Genomic Coordinates Forward (+)

12523410 .. 12523859

Gene Structure 450 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4BG070500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 450 bp

ATGGAAAAAATTGATCGGAGAAGCTGTAGTACCCTAGCTAAAACTTTGGGAACAATAGTTTCAATATCAGGGGCTTTCATTGTGACTCTTTACAAGGGACCCCCGCAACTGATGACAGCCTCAGTTGATTTATTGTCTCACAATAAACTTTTCTTGCCACAGTCAAATTGGGTCATTGGAGGAATGCTCCTTGGGTTTTATTGTGTGGTGGCTGCAGCATTTCTTATTGTACAGGTGAAATCTGTAAAAGTCGATACCCTCACGAAACTGTCGAAGTTGAAGAATTATGATTATTTACTATACGTTTTCTGTATTTCATGCATCAGTATTAAAAAAATACCCAGTAGAGCTCATTATAGTCTTTTACTATTGCTTCTTTGTGGCTATTCAATCTGTATTGGTGTTGTGGTTTGTGGAAAGAGACTCAAGTGCTTGGGCCTTAAACCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0005887 GO:0005938 GO:0006810 GO:0007154 GO:0007165 GO:0008150 GO:0009719 GO:0009725 GO:0009733 GO:0009734 GO:0009755 GO:0009987 GO:0010033 GO:0016020 GO:0016021 GO:0022857 GO:0023052 GO:0031224 GO:0031226 GO:0032870 GO:0042221 GO:0044424 GO:0044425 GO:0044444 GO:0044459 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0051716 GO:0055085 GO:0065007 GO:0070887 GO:0071310 GO:0071365 GO:0071495 GO:0071944 GO:0099568

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EamA

Protein Analysis

149

Amino Acids

16.37

Weight (kDa)

9.57

Isoelectric Point (pI)

27.53

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001686)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g34870 FvH4_4g34870 FvH4_4g34870 FvH4_4g34870 FvH4_4g34870 FvH4_4g34870 FvH4_4g34870 FvH4_4g34870
malus_domestica	MD13G1088500.v1.1 MD13G1088700.v1.1 MD16G1088800.v1.1 MD16G1088900.v1.1
prunus_persica	Prupe.1G257200_v2.0.a1 Prupe.1G257300_v2.0.a1 Prupe.1G257400_v2.0.a1 Prupe.1G257500_v2.0.a1 Prupe.1G257600_v2.0.a1 Prupe.1G257700_v2.0.a1
pyrus_communis	pycom13g07640 pycom13g07650 pycom16g07610
rosa_chinensis	RchiOBHm_Chr4g0411271 RchiOBHm_Chr4g0444271 RchiOBHm_Chr4g0444291 RchiOBHm_Chr4g0444301
rosa_laevigata	RLG00000005843
rosa_multiflora	Rmu_sc0002841.1_g000015
rosa_roxburghii	Rroxscaffold_5G00384840 Rroxscaffold_5G00384850
rosa_rugosa	Rorug03G0072000 Rorug03G0072100 Rorug04G0351100 Rorug04G0351200 Rorug04G0351300 Rorug04G0351300 Rorug04G0351300 Rorug04G0351300 Rorug07G0109600
rosa_samantha	Rh1BG171600 Rh4AG412000 Rh4BG070500 Rh4BG423500 Rh4CG078800 Rh4DG418700 Rh4DG418800
rosa_wichuraiana	Rw2G039380 Rw4G013770 Rw4G035390 Rw5G040980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	104
AfaI	GTAC	2 cut(s)	31, 231
AgsI	TTSAA	3 cut(s)	63, 280, 390
AluBI	AGCT	3 cut(s)	24, 38, 350
AluI	AGCT	3 cut(s)	24, 38, 350
Alw21I	GWGCWC	1 cut(s)	352
Alw26I	GTCTC	2 cut(s)	141, 415
AoxI	GGCC	1 cut(s)	436
ApeKI	GCWGC	2 cut(s)	212, 215
AspS9I	GGNCC	2 cut(s)	98, 436
AsuHPI	GGTGA	1 cut(s)	247
AvaII	GGWCC	1 cut(s)	98
BanII	GRGCYC	1 cut(s)	352
BarI	GAAGNNNNNNTAC	2 cut(s)	13, 45
Bbv12I	GWGCWC	1 cut(s)	352
BbvI	GCAGC	2 cut(s)	199, 227
BcoDI	GTCTC	2 cut(s)	141, 415
BfaI	CTAG	1 cut(s)	35
BfmI	CTRYAG	2 cut(s)	25, 213
BisI	GCNGC	2 cut(s)	213, 216
BlsI	GCNGC	2 cut(s)	214, 217
Bme18I	GGWCC	1 cut(s)	98
BmgT120I	GGNCC	2 cut(s)	98, 436
BmiI	GGNNCC	2 cut(s)	99, 100
BmrI	ACTGGG	1 cut(s)	336
BmsI	GCATC	1 cut(s)	330
BmuI	ACTGGG	1 cut(s)	336
BplI	GAGNNNNNCTC	2 cut(s)	171, 203
BpuEI	CTTGAG	1 cut(s)	410
BsaJI	CCNNGG	1 cut(s)	190
BsaXI	ACNNNNNCTCC	2 cut(s)	10, 40
Bse1I	ACTGG	1 cut(s)	342
BseDI	CCNNGG	1 cut(s)	190
BseMII	CTCAG	1 cut(s)	135
BseNI	ACTGG	1 cut(s)	342
BseXI	GCAGC	2 cut(s)	199, 227
BshFI	GGCC	1 cut(s)	438
BsiHKAI	GWGCWC	1 cut(s)	352
BslFI	GGGAC	1 cut(s)	111
BsmAI	GTCTC	2 cut(s)	141, 415
BsmFI	GGGAC	1 cut(s)	111
BsmI	GAATGC	1 cut(s)	189
BsnI	GGCC	1 cut(s)	438
Bsp1286I	GDGCHC	1 cut(s)	352
Bsp1407I	TGTACA	1 cut(s)	229
Bsp143I	GATC	1 cut(s)	13
BspACI	CCGC	1 cut(s)	104
BspANI	GGCC	1 cut(s)	438
BspCNI	CTCAG	1 cut(s)	134
BspLI	GGNNCC	2 cut(s)	99, 100
BspMAI	CTGCAG	1 cut(s)	217
BsrGI	TGTACA	1 cut(s)	229
BsrI	ACTGG	1 cut(s)	342
BssECI	CCNNGG	1 cut(s)	190
BssMI	GATC	1 cut(s)	13
BssT1I	CCWWGG	1 cut(s)	190
Bst4CI	ACNGT	2 cut(s)	162, 270
BstAUI	TGTACA	1 cut(s)	229
BstDEI	CTNAG	1 cut(s)	121
BstKTI	GATC	1 cut(s)	16
BstMAI	GTCTC	2 cut(s)	141, 415
BstMBI	GATC	1 cut(s)	13
BstSFI	CTRYAG	2 cut(s)	25, 213
BstV1I	GCAGC	2 cut(s)	199, 227
BsuRI	GGCC	1 cut(s)	438
Cfr13I	GGNCC	2 cut(s)	98, 436
Csp6I	GTAC	2 cut(s)	30, 230
CviAII	CATG	1 cut(s)	318
CviJI	RGCY	8 cut(s)	24, 38, 74, 119, 212, 350, 384, 438
CviKI_1	RGCY	8 cut(s)	24, 38, 74, 119, 212, 350, 384, 438
CviQI	GTAC	2 cut(s)	30, 230
DdeI	CTNAG	1 cut(s)	121
DpnI	GATC	1 cut(s)	15
DpnII	GATC	1 cut(s)	13
Ecl136II	GAGCTC	1 cut(s)	350
Eco130I	CCWWGG	1 cut(s)	190
Eco24I	GRGCYC	1 cut(s)	352
Eco47I	GGWCC	1 cut(s)	98
Eco53kI	GAGCTC	1 cut(s)	350
EcoICRI	GAGCTC	1 cut(s)	350
EcoO109I	RGGNCCY	1 cut(s)	98
EcoT14I	CCWWGG	1 cut(s)	190
EcoT22I	ATGCAT	1 cut(s)	323
EcoT38I	GRGCYC	1 cut(s)	352
ErhI	CCWWGG	1 cut(s)	190
FaeI	CATG	1 cut(s)	321
FaiI	YATR	4 cut(s)	288, 301, 319, 357
FaqI	GGGAC	1 cut(s)	111
FatI	CATG	1 cut(s)	317
FauI	CCCGC	1 cut(s)	111
Fnu4HI	GCNGC	2 cut(s)	213, 216
FriOI	GRGCYC	1 cut(s)	352
Fsp4HI	GCNGC	2 cut(s)	213, 216
FspBI	CTAG	1 cut(s)	35
GluI	GCNGC	2 cut(s)	213, 216
HaeIII	GGCC	1 cut(s)	438
Hin1II	CATG	1 cut(s)	321
HinfI	GANTC	2 cut(s)	85, 423
HphI	GGTGA	1 cut(s)	247
Hpy188I	TCNGA	1 cut(s)	18
Hpy188III	TCNNGA	1 cut(s)	262
HpyCH4III	ACNGT	2 cut(s)	162, 270
HpyCH4IV	ACGT	1 cut(s)	303
HpyCH4V	TGCA	2 cut(s)	215, 321
HpyF3I	CTNAG	1 cut(s)	121
HpySE526I	ACGT	1 cut(s)	303
Hsp92II	CATG	1 cut(s)	321
KflI	GGGWCCC	1 cut(s)	98
Kzo9I	GATC	1 cut(s)	13
LmnI	GCTCC	1 cut(s)	192
LpnPI	CCDG	3 cut(s)	54, 218, 355
Lsp1109I	GCAGC	2 cut(s)	199, 227
LweI	GCATC	1 cut(s)	330
MaeI	CTAG	1 cut(s)	35
MaeII	ACGT	1 cut(s)	303
MaeIII	GTNAC	1 cut(s)	82
MalI	GATC	1 cut(s)	15
MboI	GATC	1 cut(s)	13
MboII	GAAGA	1 cut(s)	292
MhlI	GDGCHC	1 cut(s)	352
MluCI	AATT	3 cut(s)	9, 166, 283
MlyI	GAGTC	2 cut(s)	79, 417
MnlI	CCTC	3 cut(s)	130, 173, 269
Mph1103I	ATGCAT	1 cut(s)	323
MseI	TTAA	2 cut(s)	330, 441
Mva1269I	GAATGC	1 cut(s)	189
NdeII	GATC	1 cut(s)	13
NlaIII	CATG	1 cut(s)	321
NlaIV	GGNNCC	2 cut(s)	99, 100
NmuCI	GTSAC	1 cut(s)	82
NsiI	ATGCAT	1 cut(s)	323
PcsI	WCGNNNNNNNCGW	1 cut(s)	269
PctI	GAATGC	1 cut(s)	189
PkrI	GCNGC	2 cut(s)	214, 217
PleI	GAGTC	2 cut(s)	79, 417
PpsI	GAGTC	2 cut(s)	79, 417
PpuMI	RGGWCCY	1 cut(s)	98
Psp124BI	GAGCTC	1 cut(s)	352
Psp5II	RGGWCCY	1 cut(s)	98
PspN4I	GGNNCC	2 cut(s)	99, 100
PspPI	GGNCC	2 cut(s)	98, 436
PspPPI	RGGWCCY	1 cut(s)	98
PstI	CTGCAG	1 cut(s)	217
RsaI	GTAC	2 cut(s)	31, 231
RsaNI	GTAC	2 cut(s)	30, 230
SacI	GAGCTC	1 cut(s)	352
SaqAI	TTAA	2 cut(s)	330, 441
SatI	GCNGC	2 cut(s)	213, 216
Sau3AI	GATC	1 cut(s)	13
Sau96I	GGNCC	2 cut(s)	98, 436
SchI	GAGTC	2 cut(s)	79, 417
SduI	GDGCHC	1 cut(s)	352
SetI	ASST	5 cut(s)	26, 40, 237, 306, 352
SfaNI	GCATC	1 cut(s)	330
SfcI	CTRYAG	2 cut(s)	25, 213
SinI	GGWCC	1 cut(s)	98
SmlI	CTYRAG	1 cut(s)	425
SmoI	CTYRAG	1 cut(s)	425
Sse9I	AATT	3 cut(s)	9, 166, 283
SsiI	CCGC	1 cut(s)	104
SspMI	CTAG	1 cut(s)	35
SstI	GAGCTC	1 cut(s)	352
StyI	CCWWGG	1 cut(s)	190
TaaI	ACNGT	2 cut(s)	162, 270
TaiI	ACGT	1 cut(s)	306
TaqI	TCGA	2 cut(s)	252, 272
TasI	AATT	3 cut(s)	9, 166, 283
TatI	WGTACW	1 cut(s)	229
Tru1I	TTAA	2 cut(s)	330, 441
Tru9I	TTAA	2 cut(s)	330, 441
TseFI	GTSAC	1 cut(s)	82
TseI	GCWGC	2 cut(s)	212, 215
Tsp45I	GTSAC	1 cut(s)	82
TspDTI	ATGAA	2 cut(s)	67, 306
VpaK11BI	GGWCC	1 cut(s)	98
XcmI	CCANNNNNNNNNTGG	1 cut(s)	165
XspI	CTAG	1 cut(s)	35
Zsp2I	ATGCAT	1 cut(s)	323

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.