Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr16

Orthogroup ID

OG0001686

Physical Location & Seq

Genomic Coordinates Reverse (-)

6116412 .. 6118580

Gene Structure 2169 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD16G1088800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1029 bp

ATGGGGAAGATTGCAGCACTACCAATTGTTGGGATGGTGTTGGGTGAGTGTGCACAAGCTGGGCTAATTATAATAAGCAAAATAGCCATGTCTAATGGCATGAGCAACCTCATCTTTCTCTGCTACTCCAATGCCCTCCCCACCCTCATCCTCCTCCCAATTTCTCTAGCCTTCCACAAATCTGAGCGCCCTCCTCTCACTTTCTCGATCATCAGTTGGTTCTTCTTGCTTGGTCTAATTGGATTCATGGCGCAGTTTCTTGGTTATGCTGGGATTAAATATAGCTCTCCTACTCTTAGTACAGCTATGCTCAACCTCATTCCTGCTTTTACCTTTGTACTTGCAGTTATCTTCAGAATGGAAAGAATTGACGTGAGAAGCTTCAGTAGCCTAGCTAAAACCTTGGGAACAATAGTTTCAATTTCAGGGGCTTTCATTGTGACTCTTTACAAGGGACCCCCAATTCTGAATACATCCTCAACTGTTATGACTGATATGTTGTCTCAAAAGCAACTTTTATCCGAACAGTCAAACTGGGTCCTTGGAGGAGTGTGTGTCGCAGCTAATTGCATGTTGGCCGCATCTTGGCTTATTGTACAGGCATCAGTTCTAAAGAAATACCGCGCAGAGCTGATCATGGGAGTGTTTGGCTCAGCATTCCAGGTTGGTGTATCTACTTGGTGTCTTAGAAGGACAGAGCCTGTGTTTGCAGCTATGTTCAAGCATTTGGGGATTGTCGTTGCAGTTTTCATTGGTGTTACCTTCTTAGGTGATACTTTCTACCTTGGGAGTTTGATAGGAGCAGTTGTTATTGTCATTGGATTTTATTCTGTGATGTGGGGAAAGCCAATGAAGAGAAGAGGGGTGATGATGCAGGGGAAGGAAGCCTGGCATCGAGCAAACAACGGGTCCCTCTATTGCAAAGCCATATTGAAGAAATATAGACGTTTTTTTTTTGCAGTTGCCAAAAAAAGGGTAAGTCTGTGTTGTTTTTGTCTTAGTTCTTTTAGAATGCTGCCCTTTCCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0005887 GO:0005938 GO:0006810 GO:0007154 GO:0007165 GO:0008150 GO:0009719 GO:0009725 GO:0009733 GO:0009734 GO:0009755 GO:0009987 GO:0010033 GO:0016020 GO:0016021 GO:0022857 GO:0023052 GO:0031224 GO:0031226 GO:0032870 GO:0042221 GO:0044424 GO:0044425 GO:0044444 GO:0044459 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0051716 GO:0055085 GO:0065007 GO:0070887 GO:0071310 GO:0071365 GO:0071495 GO:0071944 GO:0099568

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EamA

Protein Analysis

343

Amino Acids

37.53

Weight (kDa)

9.95

Isoelectric Point (pI)

35.35

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EamA	PF00892	13 - 148	3.6e-09	EamA-like transporter family
EamA	PF00892	164 - 278	1.5e-07	EamA-like transporter family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001686)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g34870 FvH4_4g34870 FvH4_4g34870 FvH4_4g34870 FvH4_4g34870 FvH4_4g34870 FvH4_4g34870 FvH4_4g34870
malus_domestica	MD13G1088500.v1.1 MD13G1088700.v1.1 MD16G1088800.v1.1 MD16G1088900.v1.1
prunus_persica	Prupe.1G257200_v2.0.a1 Prupe.1G257300_v2.0.a1 Prupe.1G257400_v2.0.a1 Prupe.1G257500_v2.0.a1 Prupe.1G257600_v2.0.a1 Prupe.1G257700_v2.0.a1
pyrus_communis	pycom13g07640 pycom13g07650 pycom16g07610
rosa_chinensis	RchiOBHm_Chr4g0411271 RchiOBHm_Chr4g0444271 RchiOBHm_Chr4g0444291 RchiOBHm_Chr4g0444301
rosa_laevigata	RLG00000005843
rosa_multiflora	Rmu_sc0002841.1_g000015
rosa_roxburghii	Rroxscaffold_5G00384840 Rroxscaffold_5G00384850
rosa_rugosa	Rorug03G0072000 Rorug03G0072100 Rorug04G0351100 Rorug04G0351200 Rorug04G0351300 Rorug04G0351300 Rorug04G0351300 Rorug04G0351300 Rorug07G0109600
rosa_samantha	Rh1BG171600 Rh4AG412000 Rh4BG070500 Rh4BG423500 Rh4CG078800 Rh4DG418700 Rh4DG418800
rosa_wichuraiana	Rw2G039380 Rw4G013770 Rw4G035390 Rw5G040980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	71
AccB7I	CCANNNNNTGG	1 cut(s)	29
AccII	CGCG	1 cut(s)	624
AciI	CCGC	2 cut(s)	579, 622
AcoI	YGGCCR	1 cut(s)	576
AcuI	CTGAAG	2 cut(s)	337, 367
AfaI	GTAC	3 cut(s)	301, 339, 597
AfiI	CCNNNNNNNGG	3 cut(s)	29, 585, 972
AgsI	TTSAA	3 cut(s)	420, 721, 934
AjiI	CACGTC	1 cut(s)	373
AjnI	CCWGG	2 cut(s)	660, 887
AluBI	AGCT	8 cut(s)	59, 285, 305, 381, 395, 563, 631, 713
AluI	AGCT	8 cut(s)	59, 285, 305, 381, 395, 563, 631, 713
Alw21I	GWGCWC	1 cut(s)	55
Alw26I	GTCTC	1 cut(s)	507
Alw44I	GTGCAC	1 cut(s)	51
AlwNI	CAGNNNCTG	1 cut(s)	701
AoxI	GGCC	1 cut(s)	576
ApaLI	GTGCAC	1 cut(s)	51
ApeKI	GCWGC	4 cut(s)	14, 560, 710, 1015
ArsI	GACNNNNNNTTYG	2 cut(s)	893, 925
AspLEI	GCGC	3 cut(s)	189, 253, 626
AspS9I	GGNCC	3 cut(s)	455, 538, 909
AsuHPI	GGTGA	3 cut(s)	56, 782, 877
AvaII	GGWCC	3 cut(s)	455, 538, 909
BaeGI	GKGCMC	1 cut(s)	55
Bbv12I	GWGCWC	1 cut(s)	55
BbvI	GCAGC	4 cut(s)	26, 572, 722, 1002
BccI	CCATC	1 cut(s)	28
BciT130I	CCWGG	2 cut(s)	662, 889
BclI	TGATCA	1 cut(s)	633
BcoDI	GTCTC	1 cut(s)	507
BfaI	CTAG	2 cut(s)	167, 392
BfoI	RGCGCY	1 cut(s)	190
BisI	GCNGC	5 cut(s)	15, 561, 579, 711, 1016
BlpI	GCTNAGC	1 cut(s)	652
BlsI	GCNGC	5 cut(s)	16, 562, 580, 712, 1017
Bme1390I	CCNGG	2 cut(s)	662, 889
Bme18I	GGWCC	3 cut(s)	455, 538, 909
BmgBI	CACGTC	1 cut(s)	373
BmgT120I	GGNCC	3 cut(s)	455, 538, 909
BmiI	GGNNCC	5 cut(s)	456, 457, 539, 910, 911
BmrFI	CCNGG	2 cut(s)	662, 889
BmrI	ACTGGG	1 cut(s)	544
BmsI	GCATC	4 cut(s)	590, 611, 861, 901
BmuI	ACTGGG	1 cut(s)	544
Bpu1102I	GCTNAGC	1 cut(s)	652
BsaJI	CCNNGG	3 cut(s)	402, 541, 784
BsaXI	ACNNNNNCTCC	4 cut(s)	540, 570, 792, 822
Bsc4I	CCNNNNNNNGG	3 cut(s)	29, 585, 972
Bse1I	ACTGG	1 cut(s)	539
BseBI	CCWGG	2 cut(s)	662, 889
BseDI	CCNNGG	3 cut(s)	402, 541, 784
BseGI	GGATG	3 cut(s)	39, 147, 473
BseLI	CCNNNNNNNGG	3 cut(s)	29, 585, 972
BseMII	CTCAG	2 cut(s)	174, 666
BseNI	ACTGG	1 cut(s)	539
BseRI	GAGGAG	3 cut(s)	143, 183, 561
BseSI	GKGCMC	1 cut(s)	55
BseXI	GCAGC	4 cut(s)	26, 572, 722, 1002
BseYI	CCCAGC	2 cut(s)	59, 269
Bsh1236I	CGCG	1 cut(s)	624
BshFI	GGCC	1 cut(s)	578
BsiHKAI	GWGCWC	1 cut(s)	55
BslFI	GGGAC	2 cut(s)	468, 895
BslI	CCNNNNNNNGG	3 cut(s)	29, 585, 972
BsmAI	GTCTC	1 cut(s)	507
BsmFI	GGGAC	2 cut(s)	468, 895
BsmI	GAATGC	2 cut(s)	656, 1017
BsnI	GGCC	1 cut(s)	578
Bsp1286I	GDGCHC	1 cut(s)	55
Bsp1407I	TGTACA	1 cut(s)	595
Bsp143I	GATC	2 cut(s)	207, 633
Bsp1720I	GCTNAGC	1 cut(s)	652
BspACI	CCGC	2 cut(s)	579, 622
BspANI	GGCC	1 cut(s)	578
BspCNI	CTCAG	2 cut(s)	175, 665
BspFNI	CGCG	1 cut(s)	624
BspLI	GGNNCC	5 cut(s)	456, 457, 539, 910, 911
BsrGI	TGTACA	1 cut(s)	595
BsrI	ACTGG	1 cut(s)	539
BssECI	CCNNGG	3 cut(s)	402, 541, 784
BssMI	GATC	2 cut(s)	207, 633
BssT1I	CCWWGG	3 cut(s)	402, 541, 784
Bst2UI	CCWGG	2 cut(s)	662, 889
Bst4CI	ACNGT	2 cut(s)	484, 528
Bst6I	CTCTTC	2 cut(s)	848, 853
BstAUI	TGTACA	1 cut(s)	595
BstDEI	CTNAG	6 cut(s)	183, 296, 652, 686, 766, 998
BstF5I	GGATG	3 cut(s)	39, 147, 473
BstFNI	CGCG	1 cut(s)	624
BstH2I	RGCGCY	1 cut(s)	190
BstHHI	GCGC	3 cut(s)	189, 253, 626
BstKTI	GATC	2 cut(s)	210, 636
BstMAI	GTCTC	1 cut(s)	507
BstMBI	GATC	2 cut(s)	207, 633
BstMWI	GCNNNNNNNGC	1 cut(s)	387
BstNI	CCWGG	2 cut(s)	662, 889
BstNSI	RCATGY	1 cut(s)	574
BstSCI	CCNGG	2 cut(s)	660, 887
BstSLI	GKGCMC	1 cut(s)	55
BstUI	CGCG	1 cut(s)	624
BstV1I	GCAGC	4 cut(s)	26, 572, 722, 1002
BsuRI	GGCC	1 cut(s)	578
BtrI	CACGTC	1 cut(s)	373
BtsCI	GGATG	3 cut(s)	39, 147, 473
CaiI	CAGNNNCTG	1 cut(s)	701
CfoI	GCGC	3 cut(s)	189, 253, 626
Cfr13I	GGNCC	3 cut(s)	455, 538, 909
Csp6I	GTAC	3 cut(s)	300, 338, 596
CviAII	CATG	6 cut(s)	88, 100, 247, 571, 637, 1026
CviQI	GTAC	3 cut(s)	300, 338, 596
DdeI	CTNAG	6 cut(s)	183, 296, 652, 686, 766, 998
DpnI	GATC	2 cut(s)	209, 635
DpnII	GATC	2 cut(s)	207, 633
EaeI	YGGCCR	1 cut(s)	576
Eam1104I	CTCTTC	2 cut(s)	848, 853
EarI	CTCTTC	2 cut(s)	848, 853
Eco130I	CCWWGG	3 cut(s)	402, 541, 784
Eco47I	GGWCC	3 cut(s)	455, 538, 909
Eco57I	CTGAAG	2 cut(s)	337, 367
EcoO109I	RGGNCCY	3 cut(s)	455, 538, 909
EcoRII	CCWGG	2 cut(s)	660, 887
EcoT14I	CCWWGG	3 cut(s)	402, 541, 784
ErhI	CCWWGG	3 cut(s)	402, 541, 784
FaeI	CATG	6 cut(s)	91, 103, 250, 574, 640, 1029
FaqI	GGGAC	2 cut(s)	468, 895
FatI	CATG	6 cut(s)	87, 99, 246, 570, 636, 1025
FbaI	TGATCA	1 cut(s)	633
Fnu4HI	GCNGC	5 cut(s)	15, 561, 579, 711, 1016
FokI	GGATG	3 cut(s)	46, 134, 460
Fsp4HI	GCNGC	5 cut(s)	15, 561, 579, 711, 1016
FspBI	CTAG	2 cut(s)	167, 392
GlaI	GCGC	3 cut(s)	188, 252, 625
GluI	GCNGC	5 cut(s)	15, 561, 579, 711, 1016
GsaI	CCCAGC	2 cut(s)	63, 273
HaeII	RGCGCY	1 cut(s)	190
HaeIII	GGCC	1 cut(s)	578
HhaI	GCGC	3 cut(s)	189, 253, 626
Hin1II	CATG	6 cut(s)	91, 103, 250, 574, 640, 1029
Hin6I	GCGC	3 cut(s)	187, 251, 624
HinP1I	GCGC	3 cut(s)	187, 251, 624
HindIII	AAGCTT	1 cut(s)	379
HinfI	GANTC	2 cut(s)	243, 442
HphI	GGTGA	3 cut(s)	56, 782, 877
Hpy166II	GTNNAC	1 cut(s)	53
Hpy188I	TCNGA	4 cut(s)	184, 356, 468, 523
Hpy188III	TCNNGA	1 cut(s)	205
Hpy8I	GTNNAC	1 cut(s)	53
HpyAV	CCTTC	4 cut(s)	181, 684, 772, 874
HpyCH4III	ACNGT	2 cut(s)	484, 528
HpyCH4IV	ACGT	2 cut(s)	372, 946
HpyCH4V	TGCA	9 cut(s)	14, 53, 344, 570, 710, 743, 874, 921, 959
HpyF10VI	GCNNNNNNNGC	1 cut(s)	387
HpyF3I	CTNAG	6 cut(s)	183, 296, 652, 686, 766, 998
HpySE526I	ACGT	2 cut(s)	372, 946
Hsp92II	CATG	6 cut(s)	91, 103, 250, 574, 640, 1029
HspAI	GCGC	3 cut(s)	187, 251, 624
KflI	GGGWCCC	2 cut(s)	455, 909
Ksp22I	TGATCA	1 cut(s)	633
Kzo9I	GATC	2 cut(s)	207, 633
LmnI	GCTCC	1 cut(s)	800
Lsp1109I	GCAGC	4 cut(s)	26, 572, 722, 1002
LweI	GCATC	4 cut(s)	590, 611, 861, 901
MaeI	CTAG	2 cut(s)	167, 392
MaeII	ACGT	2 cut(s)	372, 946
MaeIII	GTNAC	2 cut(s)	439, 757
MalI	GATC	2 cut(s)	209, 635
MboI	GATC	2 cut(s)	207, 633
MboII	GAAGA	6 cut(s)	19, 214, 343, 865, 870, 946
MfeI	CAATTG	1 cut(s)	24
MhlI	GDGCHC	1 cut(s)	55
MluCI	AATT	8 cut(s)	24, 66, 159, 237, 366, 420, 462, 565
MlyI	GAGTC	1 cut(s)	436
MseI	TTAA	1 cut(s)	276
MslI	CAYNNNNRTG	1 cut(s)	641
MspR9I	CCNGG	2 cut(s)	662, 889
MunI	CAATTG	1 cut(s)	24
Mva1269I	GAATGC	2 cut(s)	656, 1017
MvaI	CCWGG	2 cut(s)	662, 889
MvnI	CGCG	1 cut(s)	624
MwoI	GCNNNNNNNGC	1 cut(s)	387
NdeII	GATC	2 cut(s)	207, 633
NlaIII	CATG	6 cut(s)	91, 103, 250, 574, 640, 1029
NlaIV	GGNNCC	5 cut(s)	456, 457, 539, 910, 911
NmuCI	GTSAC	1 cut(s)	439
NspI	RCATGY	1 cut(s)	574
PctI	GAATGC	2 cut(s)	656, 1017
PfeI	GAWTC	1 cut(s)	243
PflMI	CCANNNNNTGG	1 cut(s)	29
PkrI	GCNGC	5 cut(s)	16, 562, 580, 712, 1017
PleI	GAGTC	1 cut(s)	436
PpsI	GAGTC	1 cut(s)	436
PpuMI	RGGWCCY	3 cut(s)	455, 538, 909
PsiI	TTATAA	1 cut(s)	71
Psp5II	RGGWCCY	3 cut(s)	455, 538, 909
Psp6I	CCWGG	2 cut(s)	660, 887
PspFI	CCCAGC	2 cut(s)	59, 269
PspGI	CCWGG	2 cut(s)	660, 887
PspN4I	GGNNCC	5 cut(s)	456, 457, 539, 910, 911
PspPI	GGNCC	3 cut(s)	455, 538, 909
PspPPI	RGGWCCY	3 cut(s)	455, 538, 909
PstNI	CAGNNNCTG	1 cut(s)	701
RsaI	GTAC	3 cut(s)	301, 339, 597
RsaNI	GTAC	3 cut(s)	300, 338, 596
RseI	CAYNNNNRTG	1 cut(s)	641
SaqAI	TTAA	1 cut(s)	276
SatI	GCNGC	5 cut(s)	15, 561, 579, 711, 1016
Sau3AI	GATC	2 cut(s)	207, 633
Sau96I	GGNCC	3 cut(s)	455, 538, 909
SchI	GAGTC	1 cut(s)	436
ScrFI	CCNGG	2 cut(s)	662, 889
SduI	GDGCHC	1 cut(s)	55
SfaNI	GCATC	4 cut(s)	590, 611, 861, 901
SinI	GGWCC	3 cut(s)	455, 538, 909
SmiMI	CAYNNNNRTG	1 cut(s)	641
Sse9I	AATT	8 cut(s)	24, 66, 159, 237, 366, 420, 462, 565
SsiI	CCGC	2 cut(s)	579, 622
SspMI	CTAG	2 cut(s)	167, 392
StyD4I	CCNGG	2 cut(s)	660, 887
StyI	CCWWGG	3 cut(s)	402, 541, 784
TaaI	ACNGT	2 cut(s)	484, 528
TaiI	ACGT	2 cut(s)	375, 949
TaqI	TCGA	2 cut(s)	206, 895
TasI	AATT	8 cut(s)	24, 66, 159, 237, 366, 420, 462, 565
TatI	WGTACW	3 cut(s)	299, 337, 595
TauI	GCSGC	1 cut(s)	581
TfiI	GAWTC	1 cut(s)	243
Tru1I	TTAA	1 cut(s)	276
Tru9I	TTAA	1 cut(s)	276
TseFI	GTSAC	1 cut(s)	439
TseI	GCWGC	4 cut(s)	14, 560, 710, 1015
Tsp45I	GTSAC	1 cut(s)	439
TspDTI	ATGAA	4 cut(s)	235, 424, 739, 866
Van91I	CCANNNNNTGG	1 cut(s)	29
VneI	GTGCAC	1 cut(s)	51
VpaK11BI	GGWCC	3 cut(s)	455, 538, 909
XceI	RCATGY	1 cut(s)	574
XspI	CTAG	2 cut(s)	167, 392

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.