Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0018431

Physical Location & Seq

Genomic Coordinates Reverse (-)

2302955 .. 2304274

Gene Structure 1320 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000005845

Sequence Viewer

CDS Protein Promoter (2k)

Length: 450 bp

ATGGCGATTCTGATTCAAGCTGGGAGTTTGGTACTAAACAAAGCCACCATGTCGAAAGGGGTCAACAAATACACCATGATCGTCTACGCCAACGCTCTCTCCACCCTCCTTCTTCTTCCTTCTGCCTTTGTCGTCCACAGACCATCAGAGCGACCTCCACTTACATTCTCTATACTCTGCAGATTGTTCTTGCTTGGCCTCCTTGGGATGGAAAATGTGTACCGGAAGAGGTCAAGTAGTAGCCAAGCCAAAGTTCTGGGAACCATTGTATCAATCACAGGAGCTTTTGTTGTTACACTCTACAAAGGTCCATCAATCTTACTAGTTCCTAGTTCAGCCACTCAATTCCTCTTCTCACCTCAACATTCAAACCGGCTTGTGGGAGGACTTTTTCTTGTAGCTGACGCTTTTTTCACTTCTCTATGGTACGTACATTCTCCAGGTTATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0005887 GO:0005938 GO:0007154 GO:0007165 GO:0008150 GO:0009719 GO:0009725 GO:0009733 GO:0009734 GO:0009755 GO:0009987 GO:0010033 GO:0016020 GO:0016021 GO:0023052 GO:0031224 GO:0031226 GO:0032870 GO:0042221 GO:0044424 GO:0044425 GO:0044444 GO:0044459 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0070887 GO:0071310 GO:0071365 GO:0071495 GO:0071944 GO:0099568

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EamA

Protein Analysis

150

Amino Acids

16.21

Weight (kDa)

10.14

Isoelectric Point (pI)

46.75

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0018431)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g34870 FvH4_4g34870 FvH4_4g34870
malus_domestica	MD13G1088800.v1.1
pyrus_communis	pycom13g07660
rosa_laevigata	RLG00000005844 RLG00000005845
rosa_rugosa	Rorug04G0351300
rosa_samantha	Rh4BG423400 Rh4CG437700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	84
AfaI	GTAC	4 cut(s)	33, 221, 428, 432
AfiI	CCNNNNNNNGG	2 cut(s)	208, 379
AgsI	TTSAA	2 cut(s)	17, 369
AhlI	ACTAGT	1 cut(s)	322
AjnI	CCWGG	1 cut(s)	439
AjuI	GAANNNNNNNTTGG	2 cut(s)	237, 269
AluBI	AGCT	3 cut(s)	20, 284, 401
AluI	AGCT	3 cut(s)	20, 284, 401
AoxI	GGCC	1 cut(s)	196
AspS9I	GGNCC	1 cut(s)	308
AsuHPI	GGTGA	1 cut(s)	348
AvaII	GGWCC	1 cut(s)	308
BaeI	ACNNNNGTAYC	2 cut(s)	252, 285
BccI	CCATC	3 cut(s)	151, 202, 319
BciT130I	CCWGG	1 cut(s)	441
BcuI	ACTAGT	1 cut(s)	322
BfaI	CTAG	2 cut(s)	323, 330
BfmI	CTRYAG	1 cut(s)	178
Bme1390I	CCNGG	1 cut(s)	441
Bme18I	GGWCC	1 cut(s)	308
BmgT120I	GGNCC	1 cut(s)	308
BmiI	GGNNCC	1 cut(s)	262
BmrFI	CCNGG	1 cut(s)	441
BpmI	CTGGAG	1 cut(s)	423
BsaAI	YACGTR	1 cut(s)	430
BsaJI	CCNNGG	1 cut(s)	202
BsaWI	WCCGGW	1 cut(s)	222
BsaXI	ACNNNNNCTCC	4 cut(s)	83, 113, 273, 303
Bsc4I	CCNNNNNNNGG	2 cut(s)	208, 379
Bse118I	RCCGGY	1 cut(s)	372
BseBI	CCWGG	1 cut(s)	441
BseDI	CCNNGG	1 cut(s)	202
BseGI	GGATG	1 cut(s)	213
BseLI	CCNNNNNNNGG	2 cut(s)	208, 379
BseYI	CCCAGC	1 cut(s)	20
BshFI	GGCC	1 cut(s)	198
BsiSI	CCGG	2 cut(s)	223, 373
BslI	CCNNNNNNNGG	2 cut(s)	208, 379
BsnI	GGCC	1 cut(s)	198
Bsp143I	GATC	1 cut(s)	78
BspANI	GGCC	1 cut(s)	198
BspLI	GGNNCC	1 cut(s)	262
BspMAI	CTGCAG	1 cut(s)	182
BsrFI	RCCGGY	1 cut(s)	372
BssAI	RCCGGY	1 cut(s)	372
BssECI	CCNNGG	1 cut(s)	202
BssMI	GATC	1 cut(s)	78
BssT1I	CCWWGG	1 cut(s)	202
Bst2UI	CCWGG	1 cut(s)	441
Bst6I	CTCTTC	2 cut(s)	221, 356
BstBAI	YACGTR	1 cut(s)	430
BstF5I	GGATG	1 cut(s)	213
BstKTI	GATC	1 cut(s)	81
BstMBI	GATC	1 cut(s)	78
BstNI	CCWGG	1 cut(s)	441
BstSCI	CCNGG	1 cut(s)	439
BstSFI	CTRYAG	1 cut(s)	178
BstSNI	TACGTA	1 cut(s)	430
BstXI	CCANNNNNNTGG	1 cut(s)	256
BsuRI	GGCC	1 cut(s)	198
BtsCI	GGATG	1 cut(s)	213
Cfr10I	RCCGGY	1 cut(s)	372
Cfr13I	GGNCC	1 cut(s)	308
CseI	GACGC	1 cut(s)	413
Csp6I	GTAC	4 cut(s)	32, 220, 427, 431
CviAII	CATG	2 cut(s)	49, 76
CviJI	RGCY	9 cut(s)	20, 44, 198, 243, 248, 284, 338, 376, 401
CviKI_1	RGCY	9 cut(s)	20, 44, 198, 243, 248, 284, 338, 376, 401
CviQI	GTAC	4 cut(s)	32, 220, 427, 431
DpnI	GATC	1 cut(s)	80
DpnII	GATC	1 cut(s)	78
Eam1104I	CTCTTC	2 cut(s)	221, 356
EarI	CTCTTC	2 cut(s)	221, 356
Eco105I	TACGTA	1 cut(s)	430
Eco130I	CCWWGG	1 cut(s)	202
Eco47I	GGWCC	1 cut(s)	308
EcoRII	CCWGG	1 cut(s)	439
EcoT14I	CCWWGG	1 cut(s)	202
ErhI	CCWWGG	1 cut(s)	202
FaeI	CATG	2 cut(s)	52, 79
FaiI	YATR	4 cut(s)	50, 77, 173, 424
FatI	CATG	2 cut(s)	48, 75
FblI	GTMKAC	1 cut(s)	84
FokI	GGATG	1 cut(s)	220
FspBI	CTAG	2 cut(s)	323, 330
GsaI	CCCAGC	1 cut(s)	24
GsuI	CTGGAG	1 cut(s)	423
HaeIII	GGCC	1 cut(s)	198
HapII	CCGG	2 cut(s)	223, 373
HgaI	GACGC	1 cut(s)	413
Hin1II	CATG	2 cut(s)	52, 79
HincII	GTYRAC	1 cut(s)	64
HindII	GTYRAC	1 cut(s)	64
HinfI	GANTC	2 cut(s)	7, 13
HpaII	CCGG	2 cut(s)	223, 373
HphI	GGTGA	1 cut(s)	348
Hpy166II	GTNNAC	4 cut(s)	64, 85, 136, 220
Hpy188I	TCNGA	2 cut(s)	12, 148
Hpy8I	GTNNAC	4 cut(s)	64, 85, 136, 220
HpyAV	CCTTC	2 cut(s)	119, 129
HpyCH4IV	ACGT	1 cut(s)	429
HpyCH4V	TGCA	1 cut(s)	180
HpySE526I	ACGT	1 cut(s)	429
Hsp92II	CATG	2 cut(s)	52, 79
Kzo9I	GATC	1 cut(s)	78
LmnI	GCTCC	1 cut(s)	281
LpnPI	CCDG	6 cut(s)	6, 236, 242, 264, 386, 426
MaeI	CTAG	2 cut(s)	323, 330
MaeII	ACGT	1 cut(s)	429
MaeIII	GTNAC	1 cut(s)	292
MalI	GATC	1 cut(s)	80
MboI	GATC	1 cut(s)	78
MboII	GAAGA	4 cut(s)	104, 107, 238, 343
MluCI	AATT	1 cut(s)	344
MnlI	CCTC	7 cut(s)	116, 165, 209, 222, 359, 369, 377
MspI	CCGG	2 cut(s)	223, 373
MspR9I	CCNGG	1 cut(s)	441
MvaI	CCWGG	1 cut(s)	441
NdeII	GATC	1 cut(s)	78
NlaIII	CATG	2 cut(s)	52, 79
NlaIV	GGNNCC	1 cut(s)	262
PfeI	GAWTC	2 cut(s)	7, 13
Ppu21I	YACGTR	1 cut(s)	430
Psp6I	CCWGG	1 cut(s)	439
PspFI	CCCAGC	1 cut(s)	20
PspGI	CCWGG	1 cut(s)	439
PspN4I	GGNNCC	1 cut(s)	262
PspPI	GGNCC	1 cut(s)	308
PstI	CTGCAG	1 cut(s)	182
RsaI	GTAC	4 cut(s)	33, 221, 428, 432
RsaNI	GTAC	4 cut(s)	32, 220, 427, 431
Sau3AI	GATC	1 cut(s)	78
Sau96I	GGNCC	1 cut(s)	308
ScrFI	CCNGG	1 cut(s)	441
SetI	ASST	9 cut(s)	22, 157, 233, 286, 310, 361, 403, 432, 445
SfcI	CTRYAG	1 cut(s)	178
SinI	GGWCC	1 cut(s)	308
SnaBI	TACGTA	1 cut(s)	430
SpeI	ACTAGT	1 cut(s)	322
Sse9I	AATT	1 cut(s)	344
SspMI	CTAG	2 cut(s)	323, 330
StyD4I	CCNGG	1 cut(s)	439
StyI	CCWWGG	1 cut(s)	202
TaiI	ACGT	1 cut(s)	432
TaqI	TCGA	1 cut(s)	53
TasI	AATT	1 cut(s)	344
TfiI	GAWTC	2 cut(s)	7, 13
VpaK11BI	GGWCC	1 cut(s)	308
XmiI	GTMKAC	1 cut(s)	84
XspI	CTAG	2 cut(s)	323, 330

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.