Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4C

Orthogroup ID

OG0018431

Physical Location & Seq

Genomic Coordinates Forward (+)

67591871 .. 67595299

Gene Structure 3429 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4CG437700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 765 bp

ATGGCGAAGATTGCAGCACTACCAATAGTGGGGATGGTCTTAGCTGAGTGTGCCCAAGCTGGGTTAATGATAGTAAGCAAAGCAGCCATGTCTACTGGTATGAACAACCTCATCTTTGTCTGCTACTCCAACGCTCTTGCCGCTTTTGTTCTTCTCCCAACTTCTCTATTCTTTCACAGATCAACAGACCGGCCTCCGATCACTTTCTCTATTCTCTGTTGGTTCTTCTTGCTTGGTCTACTTGGGTGTATAGCTCAGTTGATTGGGTATGCTGGGATTAATTACAGCTCTCCTACTCTTGGCACGGCTATGCTCAACCTTATTCCAGCTTTCACTTTTGTACTTGCAGTTATATTCAGAATGGAAAAAATTGATGGGAGAAGCTGCAGTACCCTAGCTAAAACCTTGGGAACAATAGTTTCAATATCAGGGGCTTTCATTGTGACTCTTTACAAGGGACCCCCACTTCTGATGACAGCCTCAGTTGATTTATTGTCTCACAATCAACTTTTCTTGCCACAGTCGAATTGGGTCATTGGAGGAATGCTCCTTGGGTTTCATTGTGTGGTGGCTGCAGCATTTCTTATCATACAGGCTTCAGTATTAAAAAAATACCCAGCAGAGCTCATTATAGTCTTTTACTATTGCTTCTTTGTGGCTATTCAATCTGTAGTGGTGTTGTGGTTTGTGGAAAGAGACTTAAGTGCTTGGGCCTTAAACCCTAAGTTGAGGTTATTTGCGGTTCTATACTCAGTAAGTAGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0005887 GO:0005938 GO:0006810 GO:0007154 GO:0007165 GO:0008150 GO:0009719 GO:0009725 GO:0009733 GO:0009734 GO:0009755 GO:0009987 GO:0010033 GO:0016020 GO:0016021 GO:0022857 GO:0023052 GO:0031224 GO:0031226 GO:0032870 GO:0042221 GO:0044424 GO:0044425 GO:0044444 GO:0044459 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0051716 GO:0055085 GO:0065007 GO:0070887 GO:0071310 GO:0071365 GO:0071495 GO:0071944 GO:0099568

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EamA

Protein Analysis

254

Amino Acids

27.68

Weight (kDa)

9.14

Isoelectric Point (pI)

31.97

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EamA	PF00892	10 - 149	2.6e-09	EamA-like transporter family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0018431)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g34870 FvH4_4g34870 FvH4_4g34870
malus_domestica	MD13G1088800.v1.1
pyrus_communis	pycom13g07660
rosa_laevigata	RLG00000005844 RLG00000005845
rosa_rugosa	Rorug04G0351300
rosa_samantha	Rh4BG423400 Rh4CG437700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	92, 238
AciI	CCGC	2 cut(s)	141, 740
AcuI	CTGAAG	1 cut(s)	582
AfaI	GTAC	2 cut(s)	342, 391
AfiI	CCNNNNNNNGG	3 cut(s)	29, 60, 299
AflII	CTTAAG	1 cut(s)	700
AgsI	TTSAA	2 cut(s)	423, 665
AluBI	AGCT	8 cut(s)	44, 59, 254, 288, 329, 384, 398, 625
AluI	AGCT	8 cut(s)	44, 59, 254, 288, 329, 384, 398, 625
Alw21I	GWGCWC	1 cut(s)	627
Alw26I	GTCTC	2 cut(s)	501, 690
AoxI	GGCC	2 cut(s)	191, 711
ApeKI	GCWGC	5 cut(s)	14, 83, 384, 572, 575
AseI	ATTAAT	1 cut(s)	279
AspS9I	GGNCC	2 cut(s)	458, 711
AvaII	GGWCC	1 cut(s)	458
BaeGI	GKGCMC	1 cut(s)	55
BanII	GRGCYC	1 cut(s)	627
BarI	GAAGNNNNNNTAC	2 cut(s)	373, 405
Bbv12I	GWGCWC	1 cut(s)	627
BbvI	GCAGC	5 cut(s)	26, 95, 371, 559, 587
BccI	CCATC	2 cut(s)	28, 368
BceAI	ACGGC	1 cut(s)	321
BcoDI	GTCTC	2 cut(s)	501, 690
BfaI	CTAG	1 cut(s)	395
BfmI	CTRYAG	3 cut(s)	385, 573, 669
BfrI	CTTAAG	1 cut(s)	700
BisI	GCNGC	6 cut(s)	15, 84, 141, 385, 573, 576
BlsI	GCNGC	6 cut(s)	16, 85, 142, 386, 574, 577
Bme18I	GGWCC	1 cut(s)	458
BmgT120I	GGNCC	2 cut(s)	458, 711
BmiI	GGNNCC	2 cut(s)	459, 460
BplI	GAGNNNNNCTC	2 cut(s)	531, 563
BsaJI	CCNNGG	2 cut(s)	405, 550
Bsc4I	CCNNNNNNNGG	3 cut(s)	29, 60, 299
Bse118I	RCCGGY	1 cut(s)	189
Bse1I	ACTGG	1 cut(s)	100
BseDI	CCNNGG	2 cut(s)	405, 550
BseGI	GGATG	1 cut(s)	39
BseLI	CCNNNNNNNGG	3 cut(s)	29, 60, 299
BseMII	CTCAG	4 cut(s)	36, 269, 495, 765
BseNI	ACTGG	1 cut(s)	100
BseSI	GKGCMC	1 cut(s)	55
BseXI	GCAGC	5 cut(s)	26, 95, 371, 559, 587
BseYI	CCCAGC	3 cut(s)	59, 272, 616
BshFI	GGCC	2 cut(s)	193, 713
BsiHKAI	GWGCWC	1 cut(s)	627
BsiSI	CCGG	1 cut(s)	190
BslFI	GGGAC	1 cut(s)	471
BslI	CCNNNNNNNGG	3 cut(s)	29, 60, 299
BsmAI	GTCTC	2 cut(s)	501, 690
BsmFI	GGGAC	1 cut(s)	471
BsmI	GAATGC	1 cut(s)	549
BsnI	GGCC	2 cut(s)	193, 713
Bsp1286I	GDGCHC	2 cut(s)	55, 627
Bsp143I	GATC	2 cut(s)	179, 198
BspACI	CCGC	2 cut(s)	141, 740
BspANI	GGCC	2 cut(s)	193, 713
BspCNI	CTCAG	4 cut(s)	37, 268, 494, 764
BspLI	GGNNCC	2 cut(s)	459, 460
BspMAI	CTGCAG	2 cut(s)	389, 577
BspTI	CTTAAG	1 cut(s)	700
BsrFI	RCCGGY	1 cut(s)	189
BsrI	ACTGG	1 cut(s)	100
BssAI	RCCGGY	1 cut(s)	189
BssECI	CCNNGG	2 cut(s)	405, 550
BssMI	GATC	2 cut(s)	179, 198
BssT1I	CCWWGG	2 cut(s)	405, 550
Bst4CI	ACNGT	1 cut(s)	522
BstAFI	CTTAAG	1 cut(s)	700
BstDEI	CTNAG	6 cut(s)	40, 45, 255, 481, 723, 751
BstF5I	GGATG	1 cut(s)	39
BstKTI	GATC	2 cut(s)	182, 201
BstMAI	GTCTC	2 cut(s)	501, 690
BstMBI	GATC	2 cut(s)	179, 198
BstMWI	GCNNNNNNNGC	3 cut(s)	11, 50, 140
BstSFI	CTRYAG	3 cut(s)	385, 573, 669
BstSLI	GKGCMC	1 cut(s)	55
BstV1I	GCAGC	5 cut(s)	26, 95, 371, 559, 587
BsuRI	GGCC	2 cut(s)	193, 713
BtsCI	GGATG	1 cut(s)	39
Cfr10I	RCCGGY	1 cut(s)	189
Cfr13I	GGNCC	2 cut(s)	458, 711
Csp6I	GTAC	2 cut(s)	341, 390
CviAII	CATG	1 cut(s)	88
CviQI	GTAC	2 cut(s)	341, 390
DdeI	CTNAG	6 cut(s)	40, 45, 255, 481, 723, 751
DpnI	GATC	2 cut(s)	181, 200
DpnII	GATC	2 cut(s)	179, 198
Ecl136II	GAGCTC	1 cut(s)	625
Eco130I	CCWWGG	2 cut(s)	405, 550
Eco24I	GRGCYC	1 cut(s)	627
Eco47I	GGWCC	1 cut(s)	458
Eco53kI	GAGCTC	1 cut(s)	625
Eco57I	CTGAAG	1 cut(s)	582
EcoICRI	GAGCTC	1 cut(s)	625
EcoO109I	RGGNCCY	1 cut(s)	458
EcoT14I	CCWWGG	2 cut(s)	405, 550
EcoT38I	GRGCYC	1 cut(s)	627
ErhI	CCWWGG	2 cut(s)	405, 550
FaeI	CATG	1 cut(s)	91
FaiI	YATR	9 cut(s)	89, 101, 251, 270, 311, 353, 590, 632, 748
FaqI	GGGAC	1 cut(s)	471
FatI	CATG	1 cut(s)	87
FblI	GTMKAC	2 cut(s)	92, 238
Fnu4HI	GCNGC	6 cut(s)	15, 84, 141, 385, 573, 576
FokI	GGATG	1 cut(s)	46
FriOI	GRGCYC	1 cut(s)	627
Fsp4HI	GCNGC	6 cut(s)	15, 84, 141, 385, 573, 576
FspBI	CTAG	1 cut(s)	395
GluI	GCNGC	6 cut(s)	15, 84, 141, 385, 573, 576
GsaI	CCCAGC	3 cut(s)	63, 276, 620
HaeIII	GGCC	2 cut(s)	193, 713
HapII	CCGG	1 cut(s)	190
Hin1II	CATG	1 cut(s)	91
HinfI	GANTC	1 cut(s)	445
HpaII	CCGG	1 cut(s)	190
Hpy166II	GTNNAC	2 cut(s)	93, 239
Hpy188I	TCNGA	3 cut(s)	198, 359, 471
Hpy8I	GTNNAC	2 cut(s)	93, 239
HpyCH4III	ACNGT	1 cut(s)	522
HpyCH4V	TGCA	4 cut(s)	14, 347, 387, 575
HpyF10VI	GCNNNNNNNGC	3 cut(s)	11, 50, 140
HpyF3I	CTNAG	6 cut(s)	40, 45, 255, 481, 723, 751
Hsp92II	CATG	1 cut(s)	91
KflI	GGGWCCC	1 cut(s)	458
Kzo9I	GATC	2 cut(s)	179, 198
LmnI	GCTCC	1 cut(s)	552
LpnPI	CCDG	8 cut(s)	45, 81, 203, 258, 339, 414, 578, 630
Lsp1109I	GCAGC	5 cut(s)	26, 95, 371, 559, 587
MaeI	CTAG	1 cut(s)	395
MaeIII	GTNAC	1 cut(s)	442
MalI	GATC	2 cut(s)	181, 200
MboI	GATC	2 cut(s)	179, 198
MboII	GAAGA	3 cut(s)	19, 143, 217
MhlI	GDGCHC	2 cut(s)	55, 627
MluCI	AATT	3 cut(s)	280, 369, 526
MlyI	GAGTC	1 cut(s)	439
MmeI	TCCRAC	1 cut(s)	153
MnlI	CCTC	5 cut(s)	119, 204, 490, 533, 723
MseI	TTAA	5 cut(s)	65, 279, 605, 701, 716
MslI	CAYNNNNRTG	1 cut(s)	308
MspCI	CTTAAG	1 cut(s)	700
MspI	CCGG	1 cut(s)	190
Mva1269I	GAATGC	1 cut(s)	549
MwoI	GCNNNNNNNGC	3 cut(s)	11, 50, 140
NdeII	GATC	2 cut(s)	179, 198
NlaIII	CATG	1 cut(s)	91
NlaIV	GGNNCC	2 cut(s)	459, 460
NmuCI	GTSAC	1 cut(s)	442
PctI	GAATGC	1 cut(s)	549
PkrI	GCNGC	6 cut(s)	16, 85, 142, 386, 574, 577
PleI	GAGTC	1 cut(s)	439
PpsI	GAGTC	1 cut(s)	439
PpuMI	RGGWCCY	1 cut(s)	458
PshBI	ATTAAT	1 cut(s)	279
Psp124BI	GAGCTC	1 cut(s)	627
Psp5II	RGGWCCY	1 cut(s)	458
PspFI	CCCAGC	3 cut(s)	59, 272, 616
PspN4I	GGNNCC	2 cut(s)	459, 460
PspPI	GGNCC	2 cut(s)	458, 711
PspPPI	RGGWCCY	1 cut(s)	458
PstI	CTGCAG	2 cut(s)	389, 577
RsaI	GTAC	2 cut(s)	342, 391
RsaNI	GTAC	2 cut(s)	341, 390
RseI	CAYNNNNRTG	1 cut(s)	308
SacI	GAGCTC	1 cut(s)	627
SaqAI	TTAA	5 cut(s)	65, 279, 605, 701, 716
SatI	GCNGC	6 cut(s)	15, 84, 141, 385, 573, 576
Sau3AI	GATC	2 cut(s)	179, 198
Sau96I	GGNCC	2 cut(s)	458, 711
SchI	GAGTC	1 cut(s)	439
SduI	GDGCHC	2 cut(s)	55, 627
SfcI	CTRYAG	3 cut(s)	385, 573, 669
SinI	GGWCC	1 cut(s)	458
SmiMI	CAYNNNNRTG	1 cut(s)	308
SmlI	CTYRAG	1 cut(s)	700
SmoI	CTYRAG	1 cut(s)	700
Sse9I	AATT	3 cut(s)	280, 369, 526
SsiI	CCGC	2 cut(s)	141, 740
SspMI	CTAG	1 cut(s)	395
SstI	GAGCTC	1 cut(s)	627
StyI	CCWWGG	2 cut(s)	405, 550
TaaI	ACNGT	1 cut(s)	522
TaqI	TCGA	1 cut(s)	524
TasI	AATT	3 cut(s)	280, 369, 526
TatI	WGTACW	1 cut(s)	340
TauI	GCSGC	1 cut(s)	143
Tru1I	TTAA	5 cut(s)	65, 279, 605, 701, 716
Tru9I	TTAA	5 cut(s)	65, 279, 605, 701, 716
TseFI	GTSAC	1 cut(s)	442
TseI	GCWGC	5 cut(s)	14, 83, 384, 572, 575
Tsp45I	GTSAC	1 cut(s)	442
TspDTI	ATGAA	3 cut(s)	116, 427, 548
Vha464I	CTTAAG	1 cut(s)	700
VpaK11BI	GGWCC	1 cut(s)	458
VspI	ATTAAT	1 cut(s)	279
XcmI	CCANNNNNNNNNTGG	1 cut(s)	525
XmiI	GTMKAC	2 cut(s)	92, 238
XspI	CTAG	1 cut(s)	395

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.