Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0018431

Physical Location & Seq

Genomic Coordinates Reverse (-)

2294812 .. 2296705

Gene Structure 1894 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000005844

Sequence Viewer

CDS Protein Promoter (2k)

Length: 678 bp

ATGTCTAAAGGGGTCAACAAACACACCATGGTCGTCTACGCCAACGATCTCTCTACCCTCCTCCTTCTCCCTTATGCCTTGTTCATCTTCCACAGATCATCACCAGACCGCCCTCCTCCACTTACATTCTCCATACCCTGCATATTCTTCTTGCTTGCCTTCCTTGCGTATGTAACTCATTATACAGAGCGAGCATTTGTGGTCTCATTCTACAAAGGTCCACCGATCATATTGCTAAGTGCACCTGATGAATTTCATTTCTCACCACCACAACATTCAAATTGGATTCTTGGAGGCCTTTTTTTGGCAGCTGATTCTTTCACCAGTTCCCTATGGTACATTCTGCAGGCATTGATCCTTCAGAAGTACCCGGCAGTTGTACGTGTTCGTAGTCTTTTTCCAATATATGCTTCGTCGCAACCATTCAGGAATTGTTTCAACTGTTATCCGATAGAGTTTGATCAGCTGGTGCGTGTGGAAGGCTGGAGCTCTTTATTGCTCTATGTTCAAGCCTCTTGGGATCATTTTTGGCGTGATCATGAGTGTCATCTTTTTGGGAGATCCATTCTATTTTGGAAGTTTGGTTGGTGCAGTTATAATTGTCACTGGATTTTATGGAGTGATGTGGGGAAAAGCCGAAGAAGAGAAGCTGGTGGAAGATGGTGGCCGGAAAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0005887 GO:0005938 GO:0007154 GO:0007165 GO:0008150 GO:0009719 GO:0009725 GO:0009733 GO:0009734 GO:0009755 GO:0009987 GO:0010033 GO:0016020 GO:0016021 GO:0023052 GO:0031224 GO:0031226 GO:0032870 GO:0042221 GO:0044424 GO:0044425 GO:0044444 GO:0044459 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0070887 GO:0071310 GO:0071365 GO:0071495 GO:0071944 GO:0099568

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EamA

Protein Analysis

226

Amino Acids

26.4

Weight (kDa)

8.91

Isoelectric Point (pI)

70.02

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0018431)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g34870 FvH4_4g34870 FvH4_4g34870
malus_domestica	MD13G1088800.v1.1
pyrus_communis	pycom13g07660
rosa_laevigata	RLG00000005844 RLG00000005845
rosa_rugosa	Rorug04G0351300
rosa_samantha	Rh4BG423400 Rh4CG437700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	597
AccI	GTMKAC	1 cut(s)	36
AciI	CCGC	1 cut(s)	109
AclWI	GGATC	3 cut(s)	349, 528, 555
AcoI	YGGCCR	1 cut(s)	665
AcsI	RAATTY	1 cut(s)	251
AcuI	CTGAAG	1 cut(s)	344
AfaI	GTAC	3 cut(s)	338, 368, 381
AfiI	CCNNNNNNNGG	1 cut(s)	304
AflIII	ACRYGT	1 cut(s)	382
AgsI	TTSAA	3 cut(s)	279, 439, 509
AjuI	GAANNNNNNNTTGG	2 cut(s)	394, 426
AluBI	AGCT	4 cut(s)	311, 466, 489, 650
AluI	AGCT	4 cut(s)	311, 466, 489, 650
Alw21I	GWGCWC	2 cut(s)	244, 491
Alw26I	GTCTC	1 cut(s)	208
Alw44I	GTGCAC	1 cut(s)	240
AlwI	GGATC	3 cut(s)	349, 528, 555
AoxI	GGCC	2 cut(s)	295, 665
ApaLI	GTGCAC	1 cut(s)	240
ApeKI	GCWGC	1 cut(s)	308
ApoI	RAATTY	1 cut(s)	251
Asp700I	GAANNNNTTC	1 cut(s)	434
AspS9I	GGNCC	1 cut(s)	218
AsuC2I	CCSGG	1 cut(s)	371
AsuHPI	GGTGA	3 cut(s)	93, 255, 313
AvaII	GGWCC	1 cut(s)	218
BaeGI	GKGCMC	1 cut(s)	244
BanII	GRGCYC	1 cut(s)	491
Bbv12I	GWGCWC	2 cut(s)	244, 491
BbvI	GCAGC	1 cut(s)	320
BccI	CCATC	1 cut(s)	654
BcgI	CGANNNNNNTGC	2 cut(s)	214, 248
BclI	TGATCA	2 cut(s)	460, 535
BcnI	CCSGG	1 cut(s)	371
BcoDI	GTCTC	1 cut(s)	208
BfmI	CTRYAG	1 cut(s)	344
BisI	GCNGC	1 cut(s)	309
BlsI	GCNGC	1 cut(s)	310
Bme1390I	CCNGG	1 cut(s)	371
Bme18I	GGWCC	1 cut(s)	218
BmgT120I	GGNCC	1 cut(s)	218
BmrFI	CCNGG	1 cut(s)	371
BpmI	CTGGAG	1 cut(s)	505
BpuMI	CCSGG	1 cut(s)	371
BsaAI	YACGTR	1 cut(s)	383
BsaI	GGTCTC	1 cut(s)	208
BsaJI	CCNNGG	1 cut(s)	27
Bsc4I	CCNNNNNNNGG	1 cut(s)	304
Bse1I	ACTGG	2 cut(s)	324, 611
BseDI	CCNNGG	1 cut(s)	27
BseLI	CCNNNNNNNGG	1 cut(s)	304
BseNI	ACTGG	2 cut(s)	324, 611
BseRI	GAGGAG	2 cut(s)	50, 105
BseSI	GKGCMC	1 cut(s)	244
BseXI	GCAGC	1 cut(s)	320
BsgI	GTGCAG	1 cut(s)	610
BshFI	GGCC	2 cut(s)	297, 667
BsiHKAI	GWGCWC	2 cut(s)	244, 491
BsiSI	CCGG	2 cut(s)	371, 668
BslI	CCNNNNNNNGG	1 cut(s)	304
BsmAI	GTCTC	1 cut(s)	208
BsnI	GGCC	2 cut(s)	297, 667
Bso31I	GGTCTC	1 cut(s)	208
Bsp1286I	GDGCHC	2 cut(s)	244, 491
Bsp143I	GATC	8 cut(s)	46, 95, 225, 354, 460, 520, 535, 560
Bsp19I	CCATGG	1 cut(s)	27
BspACI	CCGC	1 cut(s)	109
BspANI	GGCC	2 cut(s)	297, 667
BspHI	TCATGA	1 cut(s)	538
BspMAI	CTGCAG	1 cut(s)	348
BspPI	GGATC	3 cut(s)	349, 528, 555
BspTNI	GGTCTC	1 cut(s)	208
BsrI	ACTGG	2 cut(s)	324, 611
BssECI	CCNNGG	1 cut(s)	27
BssMI	GATC	8 cut(s)	46, 95, 225, 354, 460, 520, 535, 560
BssT1I	CCWWGG	1 cut(s)	27
Bst4CI	ACNGT	1 cut(s)	443
Bst6I	CTCTTC	1 cut(s)	637
BstBAI	YACGTR	1 cut(s)	383
BstC8I	GCNNGC	3 cut(s)	156, 192, 348
BstDEI	CTNAG	1 cut(s)	236
BstDSI	CCRYGG	1 cut(s)	27
BstKTI	GATC	8 cut(s)	49, 98, 228, 357, 463, 523, 538, 563
BstMAI	GTCTC	1 cut(s)	208
BstMBI	GATC	8 cut(s)	46, 95, 225, 354, 460, 520, 535, 560
BstMWI	GCNNNNNNNGC	1 cut(s)	164
BstSCI	CCNGG	1 cut(s)	369
BstSFI	CTRYAG	1 cut(s)	344
BstSLI	GKGCMC	1 cut(s)	244
BstV1I	GCAGC	1 cut(s)	320
BstX2I	RGATCY	1 cut(s)	560
BstYI	RGATCY	1 cut(s)	560
BsuRI	GGCC	2 cut(s)	297, 667
BtgI	CCRYGG	1 cut(s)	27
BtsIMutI	CAGTG	1 cut(s)	604
Cac8I	GCNNGC	3 cut(s)	156, 192, 348
CciI	TCATGA	1 cut(s)	538
Cfr13I	GGNCC	1 cut(s)	218
Csp6I	GTAC	3 cut(s)	337, 367, 380
CviAII	CATG	2 cut(s)	28, 539
CviJI	RGCY	9 cut(s)	297, 311, 466, 483, 489, 512, 636, 650, 667
CviKI_1	RGCY	9 cut(s)	297, 311, 466, 483, 489, 512, 636, 650, 667
CviQI	GTAC	3 cut(s)	337, 367, 380
DdeI	CTNAG	1 cut(s)	236
DpnI	GATC	8 cut(s)	48, 97, 227, 356, 462, 522, 537, 562
DpnII	GATC	8 cut(s)	46, 95, 225, 354, 460, 520, 535, 560
EaeI	YGGCCR	1 cut(s)	665
Eam1104I	CTCTTC	1 cut(s)	637
EarI	CTCTTC	1 cut(s)	637
Ecl136II	GAGCTC	1 cut(s)	489
Eco130I	CCWWGG	1 cut(s)	27
Eco147I	AGGCCT	1 cut(s)	297
Eco24I	GRGCYC	1 cut(s)	491
Eco31I	GGTCTC	1 cut(s)	208
Eco47I	GGWCC	1 cut(s)	218
Eco53kI	GAGCTC	1 cut(s)	489
Eco57I	CTGAAG	1 cut(s)	344
EcoICRI	GAGCTC	1 cut(s)	489
EcoT14I	CCWWGG	1 cut(s)	27
EcoT38I	GRGCYC	1 cut(s)	491
ErhI	CCWWGG	1 cut(s)	27
FaeI	CATG	2 cut(s)	31, 542
FatI	CATG	2 cut(s)	27, 538
FbaI	TGATCA	2 cut(s)	460, 535
FblI	GTMKAC	1 cut(s)	36
Fnu4HI	GCNGC	1 cut(s)	309
FriOI	GRGCYC	1 cut(s)	491
Fsp4HI	GCNGC	1 cut(s)	309
GluI	GCNGC	1 cut(s)	309
GsuI	CTGGAG	1 cut(s)	505
HaeIII	GGCC	2 cut(s)	297, 667
HapII	CCGG	2 cut(s)	371, 668
Hin1II	CATG	2 cut(s)	31, 542
HincII	GTYRAC	1 cut(s)	16
HindII	GTYRAC	1 cut(s)	16
HinfI	GANTC	2 cut(s)	286, 314
HpaII	CCGG	2 cut(s)	371, 668
HphI	GGTGA	3 cut(s)	93, 255, 313
Hpy166II	GTNNAC	4 cut(s)	16, 37, 221, 242
Hpy188I	TCNGA	2 cut(s)	363, 450
Hpy188III	TCNNGA	2 cut(s)	427, 539
Hpy8I	GTNNAC	4 cut(s)	16, 37, 221, 242
Hpy99I	CGWCG	1 cut(s)	418
HpyAV	CCTTC	4 cut(s)	74, 169, 368, 473
HpyCH4III	ACNGT	1 cut(s)	443
HpyCH4IV	ACGT	1 cut(s)	382
HpyCH4V	TGCA	4 cut(s)	141, 242, 346, 591
HpyF10VI	GCNNNNNNNGC	1 cut(s)	164
HpyF3I	CTNAG	1 cut(s)	236
HpySE526I	ACGT	1 cut(s)	382
Hsp92II	CATG	2 cut(s)	31, 542
Ksp22I	TGATCA	2 cut(s)	460, 535
Kzo9I	GATC	8 cut(s)	46, 95, 225, 354, 460, 520, 535, 560
LmnI	GCTCC	1 cut(s)	486
Lsp1109I	GCAGC	1 cut(s)	320
MaeII	ACGT	1 cut(s)	382
MaeIII	GTNAC	2 cut(s)	172, 602
MalI	GATC	8 cut(s)	48, 97, 227, 356, 462, 522, 537, 562
MboI	GATC	8 cut(s)	46, 95, 225, 354, 460, 520, 535, 560
MboII	GAAGA	5 cut(s)	79, 139, 651, 654, 669
MflI	RGATCY	1 cut(s)	560
MhlI	GDGCHC	2 cut(s)	244, 491
MluCI	AATT	4 cut(s)	251, 280, 430, 598
MnlI	CCTC	6 cut(s)	68, 71, 123, 126, 287, 523
MroXI	GAANNNNTTC	1 cut(s)	434
MspA1I	CMGCKG	2 cut(s)	311, 466
MspI	CCGG	2 cut(s)	371, 668
MspR9I	CCNGG	1 cut(s)	371
MwoI	GCNNNNNNNGC	1 cut(s)	164
NciI	CCSGG	1 cut(s)	371
NcoI	CCATGG	1 cut(s)	27
NdeII	GATC	8 cut(s)	46, 95, 225, 354, 460, 520, 535, 560
NlaIII	CATG	2 cut(s)	31, 542
NmuCI	GTSAC	1 cut(s)	602
PagI	TCATGA	1 cut(s)	538
PceI	AGGCCT	1 cut(s)	297
PdmI	GAANNNNTTC	1 cut(s)	434
PfeI	GAWTC	2 cut(s)	286, 314
PkrI	GCNGC	1 cut(s)	310
Ppu21I	YACGTR	1 cut(s)	383
PsiI	TTATAA	1 cut(s)	597
Psp124BI	GAGCTC	1 cut(s)	491
PspPI	GGNCC	1 cut(s)	218
PstI	CTGCAG	1 cut(s)	348
PsuI	RGATCY	1 cut(s)	560
PvuII	CAGCTG	2 cut(s)	311, 466
RsaI	GTAC	3 cut(s)	338, 368, 381
RsaNI	GTAC	3 cut(s)	337, 367, 380
SacI	GAGCTC	1 cut(s)	491
SatI	GCNGC	1 cut(s)	309
Sau3AI	GATC	8 cut(s)	46, 95, 225, 354, 460, 520, 535, 560
Sau96I	GGNCC	1 cut(s)	218
ScrFI	CCNGG	1 cut(s)	371
SduI	GDGCHC	2 cut(s)	244, 491
SetI	ASST	7 cut(s)	220, 247, 313, 385, 468, 491, 652
SfcI	CTRYAG	1 cut(s)	344
SinI	GGWCC	1 cut(s)	218
Sse9I	AATT	4 cut(s)	251, 280, 430, 598
SseBI	AGGCCT	1 cut(s)	297
SsiI	CCGC	1 cut(s)	109
SstI	GAGCTC	1 cut(s)	491
StuI	AGGCCT	1 cut(s)	297
StyD4I	CCNGG	1 cut(s)	369
StyI	CCWWGG	1 cut(s)	27
TaaI	ACNGT	1 cut(s)	443
TaiI	ACGT	1 cut(s)	385
TasI	AATT	4 cut(s)	251, 280, 430, 598
TfiI	GAWTC	2 cut(s)	286, 314
TscAI	CASTG	1 cut(s)	611
TseFI	GTSAC	1 cut(s)	602
TseI	GCWGC	1 cut(s)	308
Tsp45I	GTSAC	1 cut(s)	602
TspDTI	ATGAA	3 cut(s)	73, 245, 264
TspRI	CASTG	1 cut(s)	611
VneI	GTGCAC	1 cut(s)	240
VpaK11BI	GGWCC	1 cut(s)	218
XapI	RAATTY	1 cut(s)	251
XmiI	GTMKAC	1 cut(s)	36
XmnI	GAANNNNTTC	1 cut(s)	434

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.