MD13G1101100.v1.1

ethylene-responsive transcription factor

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr13
Physical Location & Seq
Reverse (-)
7165695 .. 7166993
1299 bp
Loading structure...
UTR
Exon/CDS
Intron
MD13G1101100.v1.1.491

Sequence Viewer

Length: 1299 bp
ATGGAAGAAGCGATCAGAAGGATGGACGAATTCACTCACTCTTCTGAACCCGACCCGATCACTAAAGCGCAAAGGAAGTCAACGACCGCCGCCACCAATAAGCGCTCGCTGAGAGACACTGCGACAGCCGCTGCCTCGGGCGCAATGAGATACCGCGGCGTGCGACGCAGGCCGTGGGGTCGTTACGCGGCGGAGATCCGGGACCCGCTGTCCAAAGAGAGGCGTTGGCTGGGGACCTTTGACACGGCAGAGGAAGCCGCCTGCGCCTACGACTGCGCCGCTCGTGCCATGCGCGGCGTCAAGGCTCGGACCAACTTCGTCTATCCTCCTTCCCCGCCTACCGATGTCGTCGCCGATCACCCCTTCCCTCCTTTCAGCCACCACATGCACTCTCACCCGTCTGCTAAAACCCGTAATGGTTACGGAGGCGCTAACTACTCTCCTAGTTGGAATTCTGTACCGTTTTTGCAATACCCATCTCCTAATCAGAACGATGGCTACGGCGACGCTACTACTGCTGCTGCAACTTCTTTCAACATGCTTTTCCTCCGGAATTTCATAAATCCCTCACAAAATCCATCTCCCGTTTACAATAACCAGTATCCGTACAACATAAACGGCTCTTCTTCTATTTCTTGTTCTTCAGCTTCTTTGGTCAACCATCCCTCTTCTGGTCCACGCCATGAAGCCAACATCTCCGGAAGTACTAATTTCACTACTGGTTCTTCTTCTTCCATGGCTACTACTCCTACTTCTGCTACTACAACTCTTCCCTTCATGGATATTACTTCACCTCCTCCCACAAAACCCACCTCCCACGACGATCAACACGACTACTCCTCCGACTTCTTCCCCACGGAGCCGTCCGATTCCGGGTTTCTAGAAGAGGTGATCCACCGCTTCTTCCCAAAACCCACCTCCAAGAAATTATCAAACGATGTTCCCAAATGGACTGACGACTACGCCCATCCTTCCAGTGCAGCTCAGACACCTTGCTTTGATGGGTCTTCGACGAGGTCCGTTGGAGGATACTCAAAAAACGATCACCGTCAGGTAAATGTTTGTTACAATTTCCAAGAGCTGCTGCCGCTGCCTCAGCCGCACAAGCTGGAAGGACGTAGTTTCAACGAATTAATGGATCATCATCATCAACAACAGCAAGTGTCACAGCCACAGGCAGTACCGTCTTACAACGATCACGTGCCGTTGGGCGGCGGCTCAGATCACTCCATGGGAGTGGATAACATGTTCCAGTACCCTGAGGTTATGGGTGAGTTTGCAGCCAGGTTCCAAAACTAA

Protein Analysis

433

Amino Acids

47.77

Weight (kDa)

6.54

Isoelectric Point (pI)

56.97

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AP2 PF00847 50 - 99 8.8e-12 AP2 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0016831)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g25630
malus_domestica MD13G1101100.v1.1 MD16G1101400.v1.1
prunus_persica Prupe.1G245500_v2.0.a1
pyrus_communis pycom13g08820 pycom16g08590
rosa_chinensis RchiOBHm_Chr4g0433071
rosa_laevigata RLG00000006789
rosa_multiflora Rmu_sc0001190.1_g000018
rosa_rugosa Rorug04G0265000
rosa_samantha Rh4BG327200 Rh4CG342600 Rh4DG322200
rosa_wichuraiana Rw4G027730

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 281
AccII CGCG 3 cut(s) 156, 188, 294
AccIII TCCGGA 2 cut(s) 549, 698
AclWI GGATC 3 cut(s) 190, 886, 1146
AcsI RAATTY 3 cut(s) 29, 451, 553
AcuI CTGAAG 1 cut(s) 627
AcvI CACGTG 1 cut(s) 1201
AcyI GRCGYC 1 cut(s) 297
AfaI GTAC 5 cut(s) 459, 608, 706, 1182, 1256
AfeI AGCGCT 1 cut(s) 104
AfiI CCNNNNNNNGG 4 cut(s) 219, 671, 873, 1211
AflIII ACRYGT 1 cut(s) 1245
AgsI TTSAA 2 cut(s) 535, 1126
AhdI GACNNNNNGTC 1 cut(s) 208
AjnI CCWGG 1 cut(s) 1283
AloI GAACNNNNNNTCC 2 cut(s) 1232, 1264
AluBI AGCT 4 cut(s) 647, 983, 1081, 1108
AluI AGCT 4 cut(s) 647, 983, 1081, 1108
Alw26I GTCTC 1 cut(s) 108
AlwI GGATC 3 cut(s) 190, 886, 1146
AlwNI CAGNNNCTG 1 cut(s) 131
Ama87I CYCGRG 1 cut(s) 136
Aor13HI TCCGGA 2 cut(s) 549, 698
Aor51HI AGCGCT 1 cut(s) 104
AoxI GGCC 1 cut(s) 170
ApeKI GCWGC 8 cut(s) 131, 518, 521, 980, 1081, 1084, 1090, 1280
ApoI RAATTY 3 cut(s) 29, 451, 553
AseI ATTAAT 1 cut(s) 1133
AspLEI GCGC 7 cut(s) 70, 105, 143, 266, 278, 294, 431
AspS9I GGNCC 5 cut(s) 202, 234, 309, 674, 1017
AsuC2I CCSGG 2 cut(s) 200, 874
AsuHPI GGTGA 6 cut(s) 350, 386, 783, 901, 1037, 1283
AvaI CYCGRG 1 cut(s) 136
AvaII GGWCC 5 cut(s) 202, 234, 309, 674, 1017
AxyI CCTNAGG 1 cut(s) 1260
BauI CACGAG 1 cut(s) 282
BbrPI CACGTG 1 cut(s) 1201
BbsI GAAGAC 1 cut(s) 999
BbvCI CCTCAGC 1 cut(s) 1095
BbvI GCAGC 8 cut(s) 118, 505, 508, 992, 1068, 1071, 1077, 1292
BccI CCATC 7 cut(s) 16, 484, 488, 586, 669, 975, 995
BceAI ACGGC 6 cut(s) 157, 261, 517, 634, 847, 1189
BciT130I CCWGG 1 cut(s) 1285
BciVI GTATCC 2 cut(s) 612, 1022
BcnI CCSGG 2 cut(s) 200, 874
BcoDI GTCTC 1 cut(s) 108
BfaI CTAG 2 cut(s) 444, 881
BfoI RGCGCY 2 cut(s) 106, 432
BfuI GTATCC 2 cut(s) 612, 1022
BmcAI AGTACT 1 cut(s) 706
Bme1390I CCNGG 3 cut(s) 200, 874, 1285
Bme18I GGWCC 5 cut(s) 202, 234, 309, 674, 1017
BmeRI GACNNNNNGTC 1 cut(s) 208
BmeT110I CYCGRG 1 cut(s) 136
BmgT120I GGNCC 5 cut(s) 202, 234, 309, 674, 1017
BmiI GGNNCC 5 cut(s) 203, 204, 235, 861, 1289
BmrFI CCNGG 3 cut(s) 200, 874, 1285
BpiI GAAGAC 1 cut(s) 999
Bpu10I CCTNAGC 1 cut(s) 1095
BpuMI CCSGG 2 cut(s) 200, 874
BsaAI YACGTR 1 cut(s) 1201
BsaBI GATNNNNATC 1 cut(s) 1143
BsaHI GRCGYC 1 cut(s) 297
BsaJI CCNNGG 6 cut(s) 135, 154, 173, 735, 855, 1230
BsaWI WCCGGW 2 cut(s) 549, 698
BsaXI ACNNNNNCTCC 6 cut(s) 778, 808, 821, 824, 851, 854
Bsc4I CCNNNNNNNGG 4 cut(s) 219, 671, 873, 1211
Bse1I ACTGG 4 cut(s) 598, 724, 975, 1252
Bse21I CCTNAGG 1 cut(s) 1260
Bse3DI GCAATG 1 cut(s) 150
Bse8I GATNNNNATC 1 cut(s) 1143
BseAI TCCGGA 2 cut(s) 549, 698
BseBI CCWGG 1 cut(s) 1285
BseDI CCNNGG 6 cut(s) 135, 154, 173, 735, 855, 1230
BseGI GGATG 3 cut(s) 27, 661, 967
BseJI GATNNNNATC 1 cut(s) 1143
BseLI CCNNNNNNNGG 4 cut(s) 219, 671, 873, 1211
BseMI GCAATG 1 cut(s) 150
BseMII CTCAG 5 cut(s) 101, 998, 1109, 1233, 1251
BseNI ACTGG 4 cut(s) 598, 724, 975, 1252
BseRI GAGGAG 2 cut(s) 786, 829
BseXI GCAGC 8 cut(s) 118, 505, 508, 992, 1068, 1071, 1077, 1292
BseYI CCCAGC 1 cut(s) 229
BsgI GTGCAG 1 cut(s) 999
Bsh1236I CGCG 3 cut(s) 156, 188, 294
Bsh1285I CGRYCG 1 cut(s) 87
BshFI GGCC 1 cut(s) 172
BsiEI CGRYCG 1 cut(s) 87
BsiHKCI CYCGRG 1 cut(s) 136
BsiSI CCGG 4 cut(s) 199, 550, 699, 873
BslFI GGGAC 2 cut(s) 215, 247
BslI CCNNNNNNNGG 4 cut(s) 219, 671, 873, 1211
BsmAI GTCTC 1 cut(s) 108
BsmFI GGGAC 2 cut(s) 215, 247
BsnI GGCC 1 cut(s) 172
BsoBI CYCGRG 1 cut(s) 136
Bsp13I TCCGGA 2 cut(s) 549, 698
Bsp19I CCATGG 2 cut(s) 735, 1230
BspANI GGCC 1 cut(s) 172
BspCNI CTCAG 5 cut(s) 102, 997, 1108, 1232, 1252
BspEI TCCGGA 2 cut(s) 549, 698
BspFNI CGCG 3 cut(s) 156, 188, 294
BspLI GGNNCC 5 cut(s) 203, 204, 235, 861, 1289
BspPI GGATC 3 cut(s) 190, 886, 1146
BspQI GCTCTTC 1 cut(s) 628
BsrBI CCGCTC 1 cut(s) 281
BsrDI GCAATG 1 cut(s) 150
BsrI ACTGG 4 cut(s) 598, 724, 975, 1252
BssECI CCNNGG 6 cut(s) 135, 154, 173, 735, 855, 1230
BssNI GRCGYC 1 cut(s) 297
BssSI CACGAG 1 cut(s) 282
BssT1I CCWWGG 2 cut(s) 735, 1230
Bst2BI CACGAG 1 cut(s) 282
Bst2UI CCWGG 1 cut(s) 1285
Bst4CI ACNGT 3 cut(s) 462, 1049, 1185
Bst6I CTCTTC 5 cut(s) 46, 628, 673, 774, 879
BstACI GRCGYC 1 cut(s) 297
BstBAI YACGTR 1 cut(s) 1201
BstC8I GCNNGC 4 cut(s) 107, 161, 170, 262
BstDEI CTNAG 5 cut(s) 110, 984, 1095, 1219, 1260
BstDSI CCRYGG 5 cut(s) 154, 173, 735, 855, 1230
BstF5I GGATG 3 cut(s) 27, 661, 967
BstFNI CGCG 3 cut(s) 156, 188, 294
BstH2I RGCGCY 2 cut(s) 106, 432
BstHHI GCGC 7 cut(s) 70, 105, 143, 266, 278, 294, 431
BstMAI GTCTC 1 cut(s) 108
BstMCI CGRYCG 1 cut(s) 87
BstNI CCWGG 1 cut(s) 1285
BstNSI RCATGY 3 cut(s) 388, 541, 1249
BstSCI CCNGG 3 cut(s) 198, 872, 1283
BstUI CGCG 3 cut(s) 156, 188, 294
BstV1I GCAGC 8 cut(s) 118, 505, 508, 992, 1068, 1071, 1077, 1292
BstV2I GAAGAC 1 cut(s) 999
BstX2I RGATCY 1 cut(s) 195
BstXI CCANNNNNNTGG 1 cut(s) 1237
BstYI RGATCY 1 cut(s) 195
Bsu36I CCTNAGG 1 cut(s) 1260
BsuI GTATCC 2 cut(s) 612, 1022
BsuRI GGCC 1 cut(s) 172
BtgI CCRYGG 5 cut(s) 154, 173, 735, 855, 1230
BtsCI GGATG 3 cut(s) 27, 661, 967
BtsI GCAGTG 1 cut(s) 117
BtsIMutI CAGTG 2 cut(s) 117, 982
Cac8I GCNNGC 4 cut(s) 107, 161, 170, 262
CaiI CAGNNNCTG 1 cut(s) 131
CfoI GCGC 7 cut(s) 70, 105, 143, 266, 278, 294, 431
Cfr13I GGNCC 5 cut(s) 202, 234, 309, 674, 1017
Cfr42I CCGCGG 1 cut(s) 157
CseI GACGC 3 cut(s) 174, 286, 515
Csp6I GTAC 5 cut(s) 458, 607, 705, 1181, 1255
CviAII CATG 8 cut(s) 289, 385, 538, 683, 736, 778, 1231, 1246
CviQI GTAC 5 cut(s) 458, 607, 705, 1181, 1255
DdeI CTNAG 5 cut(s) 110, 984, 1095, 1219, 1260
DriI GACNNNNNGTC 1 cut(s) 208
Eam1104I CTCTTC 5 cut(s) 46, 628, 673, 774, 879
Eam1105I GACNNNNNGTC 1 cut(s) 208
EarI CTCTTC 5 cut(s) 46, 628, 673, 774, 879
EciI GGCGGA 1 cut(s) 206
Eco130I CCWWGG 2 cut(s) 735, 1230
Eco47I GGWCC 5 cut(s) 202, 234, 309, 674, 1017
Eco47III AGCGCT 1 cut(s) 104
Eco57I CTGAAG 1 cut(s) 627
Eco72I CACGTG 1 cut(s) 1201
Eco81I CCTNAGG 1 cut(s) 1260
Eco88I CYCGRG 1 cut(s) 136
EcoO109I RGGNCCY 2 cut(s) 202, 234
EcoRI GAATTC 2 cut(s) 29, 451
EcoRII CCWGG 1 cut(s) 1283
EcoT14I CCWWGG 2 cut(s) 735, 1230
ErhI CCWWGG 2 cut(s) 735, 1230
FaeI CATG 8 cut(s) 292, 388, 541, 686, 739, 781, 1234, 1249
FaqI GGGAC 2 cut(s) 215, 247
FatI CATG 8 cut(s) 288, 384, 537, 682, 735, 777, 1230, 1245
FauI CCCGC 2 cut(s) 213, 342
FokI GGATG 3 cut(s) 34, 648, 954
FspBI CTAG 2 cut(s) 444, 881
GlaI GCGC 7 cut(s) 69, 104, 142, 265, 277, 293, 430
GsaI CCCAGC 1 cut(s) 233
HaeII RGCGCY 2 cut(s) 106, 432
HaeIII GGCC 1 cut(s) 172
HapII CCGG 4 cut(s) 199, 550, 699, 873
HgaI GACGC 3 cut(s) 174, 286, 515
HhaI GCGC 7 cut(s) 70, 105, 143, 266, 278, 294, 431
Hin1I GRCGYC 1 cut(s) 297
Hin1II CATG 8 cut(s) 292, 388, 541, 686, 739, 781, 1234, 1249
Hin6I GCGC 7 cut(s) 68, 103, 141, 264, 276, 292, 429
HinP1I GCGC 7 cut(s) 68, 103, 141, 264, 276, 292, 429
HincII GTYRAC 2 cut(s) 81, 658
HindII GTYRAC 2 cut(s) 81, 658
HinfI GANTC 1 cut(s) 869
HpaII CCGG 4 cut(s) 199, 550, 699, 873
HphI GGTGA 6 cut(s) 350, 386, 783, 901, 1037, 1283
Hpy166II GTNNAC 4 cut(s) 81, 589, 658, 677
Hpy188I TCNGA 8 cut(s) 17, 46, 309, 489, 844, 868, 987, 1222
Hpy188III TCNNGA 3 cut(s) 550, 699, 881
Hpy8I GTNNAC 4 cut(s) 81, 589, 658, 677
Hpy99I CGWCG 5 cut(s) 168, 353, 509, 824, 1015
HpyAV CCTTC 6 cut(s) 12, 339, 373, 784, 981, 1106
HpyCH4III ACNGT 3 cut(s) 462, 1049, 1185
HpyCH4IV ACGT 2 cut(s) 1117, 1200
HpyCH4V TGCA 5 cut(s) 388, 469, 524, 980, 1280
HpyF3I CTNAG 5 cut(s) 110, 984, 1095, 1219, 1260
HpySE526I ACGT 2 cut(s) 1117, 1200
Hsp92I GRCGYC 1 cut(s) 297
Hsp92II CATG 8 cut(s) 292, 388, 541, 686, 739, 781, 1234, 1249
HspAI GCGC 7 cut(s) 68, 103, 141, 264, 276, 292, 429
KflI GGGWCCC 1 cut(s) 202
Kpn2I TCCGGA 2 cut(s) 549, 698
KspI CCGCGG 1 cut(s) 157
LguI GCTCTTC 1 cut(s) 628
LmnI GCTCC 1 cut(s) 859
Lsp1109I GCAGC 8 cut(s) 118, 505, 508, 992, 1068, 1071, 1077, 1292
MaeI CTAG 2 cut(s) 444, 881
MaeII ACGT 2 cut(s) 1117, 1200
MaeIII GTNAC 4 cut(s) 182, 419, 1064, 1164
MbiI CCGCTC 1 cut(s) 281
MflI RGATCY 1 cut(s) 195
MluCI AATT 7 cut(s) 29, 451, 553, 709, 926, 1069, 1130
MmeI TCCRAC 3 cut(s) 428, 867, 1003
MroI TCCGGA 2 cut(s) 549, 698
MseI TTAA 1 cut(s) 1133
MslI CAYNNNNRTG 1 cut(s) 1235
MspA1I CMGCKG 4 cut(s) 131, 156, 208, 1090
MspI CCGG 4 cut(s) 199, 550, 699, 873
MspR9I CCNGG 3 cut(s) 200, 874, 1285
MvaI CCWGG 1 cut(s) 1285
MvnI CGCG 3 cut(s) 156, 188, 294
NciI CCSGG 2 cut(s) 200, 874
NcoI CCATGG 2 cut(s) 735, 1230
NlaIII CATG 8 cut(s) 292, 388, 541, 686, 739, 781, 1234, 1249
NlaIV GGNNCC 5 cut(s) 203, 204, 235, 861, 1289
NmuCI GTSAC 1 cut(s) 1164
NspI RCATGY 3 cut(s) 388, 541, 1249
PciI ACATGT 1 cut(s) 1245
PciSI GCTCTTC 1 cut(s) 628
PcsI WCGNNNNNNNCGW 1 cut(s) 828
PfeI GAWTC 1 cut(s) 869
PflFI GACNNNGTC 1 cut(s) 1015
PfoI TCCNGGA 1 cut(s) 198
PmaCI CACGTG 1 cut(s) 1201
PmlI CACGTG 1 cut(s) 1201
Ppu21I YACGTR 1 cut(s) 1201
PpuMI RGGWCCY 2 cut(s) 202, 234
PscI ACATGT 1 cut(s) 1245
PshBI ATTAAT 1 cut(s) 1133
Psp5II RGGWCCY 2 cut(s) 202, 234
Psp6I CCWGG 1 cut(s) 1283
PspCI CACGTG 1 cut(s) 1201
PspFI CCCAGC 1 cut(s) 229
PspGI CCWGG 1 cut(s) 1283
PspN4I GGNNCC 5 cut(s) 203, 204, 235, 861, 1289
PspPI GGNCC 5 cut(s) 202, 234, 309, 674, 1017
PspPPI RGGWCCY 2 cut(s) 202, 234
PsrI GAACNNNNNNTAC 2 cut(s) 482, 514
PstNI CAGNNNCTG 1 cut(s) 131
PsuI RGATCY 1 cut(s) 195
PsyI GACNNNGTC 1 cut(s) 1015
RsaI GTAC 5 cut(s) 459, 608, 706, 1182, 1256
RsaNI GTAC 5 cut(s) 458, 607, 705, 1181, 1255
RseI CAYNNNNRTG 1 cut(s) 1235
SacII CCGCGG 1 cut(s) 157
SapI GCTCTTC 1 cut(s) 628
SaqAI TTAA 1 cut(s) 1133
Sau96I GGNCC 5 cut(s) 202, 234, 309, 674, 1017
ScaI AGTACT 1 cut(s) 706
ScrFI CCNGG 3 cut(s) 200, 874, 1285
Sfr303I CCGCGG 1 cut(s) 157
SgrBI CCGCGG 1 cut(s) 157
SinI GGWCC 5 cut(s) 202, 234, 309, 674, 1017
SmiMI CAYNNNNRTG 1 cut(s) 1235
Sse9I AATT 7 cut(s) 29, 451, 553, 709, 926, 1069, 1130
SspMI CTAG 2 cut(s) 444, 881
StyD4I CCNGG 3 cut(s) 198, 872, 1283
StyI CCWWGG 2 cut(s) 735, 1230
TaaI ACNGT 3 cut(s) 462, 1049, 1185
TaiI ACGT 2 cut(s) 1120, 1203
TaqI TCGA 1 cut(s) 1010
TasI AATT 7 cut(s) 29, 451, 553, 709, 926, 1069, 1130
TatI WGTACW 1 cut(s) 704
TfiI GAWTC 1 cut(s) 869
Tru1I TTAA 1 cut(s) 1133
Tru9I TTAA 1 cut(s) 1133
TscAI CASTG 2 cut(s) 124, 982
TseFI GTSAC 1 cut(s) 1164
TseI GCWGC 8 cut(s) 131, 518, 521, 980, 1081, 1084, 1090, 1280
Tsp45I GTSAC 1 cut(s) 1164
TspDTI ATGAA 3 cut(s) 547, 699, 766
TspGWI ACGGA 4 cut(s) 438, 594, 872, 1009
TspRI CASTG 2 cut(s) 124, 982
Tth111I GACNNNGTC 1 cut(s) 1015
VpaK11BI GGWCC 5 cut(s) 202, 234, 309, 674, 1017
VspI ATTAAT 1 cut(s) 1133
XapI RAATTY 3 cut(s) 29, 451, 553
XbaI TCTAGA 1 cut(s) 880
XceI RCATGY 3 cut(s) 388, 541, 1249
XcmI CCANNNNNNNNNTGG 1 cut(s) 668
XspI CTAG 2 cut(s) 444, 881
ZrmI AGTACT 1 cut(s) 706
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.