Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0003431

Physical Location & Seq

Genomic Coordinates Forward (+)

43709880 .. 43711398

Gene Structure 1519 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0265000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 384 bp

ATGGGTGTTTATGCAGATATATGTAATGACACAGTTGAAGAAGCTGAAAAGTTTTTGGGTCAACCTTTACATTTGCTGTTCTCATTTACACTGATTGTACTGATGGGACATCCCTTGGAAGCTCATTGTCACCTCCTTTTCCTGGTCCTTGCACACTCAGAACAACATTGGCACCTAAAAAGTGTGATTTGTAAAACCCACCTAAAACGTGGTCTAAGTCCAATCGGCAGAATTCACAAAGGTGTGTTCCTTCTGGATGAAGGTAAAATGTGTAAATCAATATGCAAGGTGGTCTTTTGGCATGTCAGTACTGTTTTCATAAAGCTCTTGATAAGTTTCGTCTTCTATGACATGTATACTGCAACTTGCTATGAAAATAGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006725 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009451 GO:0009507 GO:0009536 GO:0009987 GO:0010019 GO:0016070 GO:0016787 GO:0016788 GO:0023052 GO:0031930 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2 PPR_3 Smr

Protein Analysis

127

Amino Acids

14.58

Weight (kDa)

7.13

Isoelectric Point (pI)

31.41

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0003431)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G23280
fragaria_vesca	FvH4_4g25580
malus_domestica	MD03G1198200.v1.1 MD11G1214400.v1.1
prunus_persica	Prupe.1G244800_v2.0.a1 Prupe.1G244800_v2.0.a1 Prupe.8G011700_v2.0.a1 Prupe.8G011700_v2.0.a1 Prupe.8G011700_v2.0.a1 Prupe.8G016700_v2.0.a1 Prupe.8G016700_v2.0.a1 Prupe.8G016700_v2.0.a1 Prupe.8G016700_v2.0.a1
pyrus_communis	pycom03g14980 pycom11g18880
rosa_chinensis	RchiOBHm_Chr4g0433011 RchiOBHm_Chr7g0190541
rosa_laevigata	RLG00000004517 RLG00000006793
rosa_multiflora	Rmu_sc0001762.1_g000037 Rmu_sc0001784.1_g000019
rosa_roxburghii	Rroxscaffold_3G00264520 Rroxscaffold_5G00374450
rosa_rugosa	Rorug04G0265000 Rorug04G0265000 Rorug06G0505000
rosa_samantha	Rh4AG318600 Rh4BG326700 Rh4CG342100 Rh4DG321900 Rh7AG111500 Rh7BG114500 Rh7CG116300 Rh7DG115400
rosa_wichuraiana	Rw4G027710 Rw7G009730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	171
AccI	GTMKAC	1 cut(s)	356
AcsI	RAATTY	1 cut(s)	231
AfaI	GTAC	2 cut(s)	99, 310
AfiI	CCNNNNNNNGG	1 cut(s)	142
AflIII	ACRYGT	1 cut(s)	351
AgsI	TTSAA	1 cut(s)	38
AjnI	CCWGG	1 cut(s)	141
AleI	CACNNNNGTG	1 cut(s)	240
AluBI	AGCT	3 cut(s)	44, 122, 325
AluI	AGCT	3 cut(s)	44, 122, 325
ApoI	RAATTY	1 cut(s)	231
AspS9I	GGNCC	1 cut(s)	145
AsuHPI	GGTGA	1 cut(s)	122
AvaII	GGWCC	1 cut(s)	145
BanI	GGYRCC	1 cut(s)	171
BbsI	GAAGAC	1 cut(s)	334
BccI	CCATC	1 cut(s)	97
BciT130I	CCWGG	1 cut(s)	143
BmcAI	AGTACT	1 cut(s)	310
Bme1390I	CCNGG	1 cut(s)	143
Bme18I	GGWCC	1 cut(s)	145
BmgT120I	GGNCC	1 cut(s)	145
BmiI	GGNNCC	1 cut(s)	173
BmrFI	CCNGG	1 cut(s)	143
BpiI	GAAGAC	1 cut(s)	334
BsaJI	CCNNGG	1 cut(s)	114
Bsc4I	CCNNNNNNNGG	1 cut(s)	142
BseBI	CCWGG	1 cut(s)	143
BseDI	CCNNGG	1 cut(s)	114
BseGI	GGATG	2 cut(s)	109, 262
BseLI	CCNNNNNNNGG	1 cut(s)	142
BseMII	CTCAG	1 cut(s)	171
BshNI	GGYRCC	1 cut(s)	171
BslFI	GGGAC	1 cut(s)	120
BslI	CCNNNNNNNGG	1 cut(s)	142
BsmFI	GGGAC	1 cut(s)	120
BspCNI	CTCAG	1 cut(s)	170
BspLI	GGNNCC	1 cut(s)	173
BspT107I	GGYRCC	1 cut(s)	171
BssECI	CCNNGG	1 cut(s)	114
BssNAI	GTATAC	1 cut(s)	357
BssT1I	CCWWGG	1 cut(s)	114
Bst1107I	GTATAC	1 cut(s)	357
Bst2UI	CCWGG	1 cut(s)	143
Bst4CI	ACNGT	2 cut(s)	34, 313
BstDEI	CTNAG	2 cut(s)	157, 215
BstF5I	GGATG	2 cut(s)	109, 262
BstNI	CCWGG	1 cut(s)	143
BstNSI	RCATGY	2 cut(s)	305, 355
BstSCI	CCNGG	1 cut(s)	141
BstV2I	GAAGAC	1 cut(s)	334
BstZ17I	GTATAC	1 cut(s)	357
BtsCI	GGATG	2 cut(s)	109, 262
BtsIMutI	CAGTG	1 cut(s)	89
Cfr13I	GGNCC	1 cut(s)	145
Csp6I	GTAC	2 cut(s)	98, 309
CviAII	CATG	2 cut(s)	302, 352
CviJI	RGCY	3 cut(s)	44, 122, 325
CviKI_1	RGCY	3 cut(s)	44, 122, 325
CviQI	GTAC	2 cut(s)	98, 309
DdeI	CTNAG	2 cut(s)	157, 215
Eco130I	CCWWGG	1 cut(s)	114
Eco47I	GGWCC	1 cut(s)	145
EcoRI	GAATTC	1 cut(s)	231
EcoRII	CCWGG	1 cut(s)	141
EcoT14I	CCWWGG	1 cut(s)	114
ErhI	CCWWGG	1 cut(s)	114
FaeI	CATG	2 cut(s)	305, 355
FalI	AAGNNNNNCTT	2 cut(s)	278, 310
FaqI	GGGAC	1 cut(s)	120
FatI	CATG	2 cut(s)	301, 351
FblI	GTMKAC	1 cut(s)	356
FokI	GGATG	2 cut(s)	96, 269
Hin1II	CATG	2 cut(s)	305, 355
HincII	GTYRAC	1 cut(s)	62
HindII	GTYRAC	1 cut(s)	62
HphI	GGTGA	1 cut(s)	122
Hpy166II	GTNNAC	2 cut(s)	62, 357
Hpy188I	TCNGA	1 cut(s)	160
Hpy188III	TCNNGA	2 cut(s)	254, 328
Hpy8I	GTNNAC	2 cut(s)	62, 357
HpyAV	CCTTC	2 cut(s)	254, 260
HpyCH4III	ACNGT	2 cut(s)	34, 313
HpyCH4IV	ACGT	1 cut(s)	208
HpyCH4V	TGCA	4 cut(s)	14, 152, 285, 362
HpyF3I	CTNAG	2 cut(s)	157, 215
HpySE526I	ACGT	1 cut(s)	208
Hsp92II	CATG	2 cut(s)	305, 355
LpnPI	CCDG	3 cut(s)	128, 155, 239
MaeII	ACGT	1 cut(s)	208
MaeIII	GTNAC	1 cut(s)	128
MboII	GAAGA	2 cut(s)	50, 334
MluCI	AATT	1 cut(s)	231
MnlI	CCTC	1 cut(s)	143
MslI	CAYNNNNRTG	1 cut(s)	240
MspR9I	CCNGG	1 cut(s)	143
MvaI	CCWGG	1 cut(s)	143
NlaIII	CATG	2 cut(s)	305, 355
NlaIV	GGNNCC	1 cut(s)	173
NmuCI	GTSAC	1 cut(s)	128
NspI	RCATGY	2 cut(s)	305, 355
OliI	CACNNNNGTG	1 cut(s)	240
PciI	ACATGT	1 cut(s)	351
PscI	ACATGT	1 cut(s)	351
Psp6I	CCWGG	1 cut(s)	141
PspGI	CCWGG	1 cut(s)	141
PspN4I	GGNNCC	1 cut(s)	173
PspPI	GGNCC	1 cut(s)	145
RsaI	GTAC	2 cut(s)	99, 310
RsaNI	GTAC	2 cut(s)	98, 309
RseI	CAYNNNNRTG	1 cut(s)	240
Sau96I	GGNCC	1 cut(s)	145
ScaI	AGTACT	1 cut(s)	310
ScrFI	CCNGG	1 cut(s)	143
SinI	GGWCC	1 cut(s)	145
SmiMI	CAYNNNNRTG	1 cut(s)	240
Sse9I	AATT	1 cut(s)	231
StyD4I	CCNGG	1 cut(s)	141
StyI	CCWWGG	1 cut(s)	114
TaaI	ACNGT	2 cut(s)	34, 313
TaiI	ACGT	1 cut(s)	211
TasI	AATT	1 cut(s)	231
TatI	WGTACW	2 cut(s)	97, 308
TscAI	CASTG	1 cut(s)	96
TseFI	GTSAC	1 cut(s)	128
Tsp45I	GTSAC	1 cut(s)	128
TspDTI	ATGAA	2 cut(s)	273, 307
TspRI	CASTG	1 cut(s)	96
VpaK11BI	GGWCC	1 cut(s)	145
XapI	RAATTY	1 cut(s)	231
XceI	RCATGY	2 cut(s)	305, 355
XcmI	CCANNNNNNNNNTGG	1 cut(s)	206
XmiI	GTMKAC	1 cut(s)	356
ZrmI	AGTACT	1 cut(s)	310

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.