Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0001981

Physical Location & Seq

Genomic Coordinates Forward (+)

62060971 .. 62063846

Gene Structure 2876 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0505000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1095 bp

ATGTCGGATGTAATTAGCGATCCCAGCTATGCAGATGATCTCTCCAATTCTTTTTCCGGCCTAAACCTTCACGTGTTTTCACTAGCGGAGCTTAAAGTTGCAACAAACAACTTTTCATGGAGTAATTTGCTTGGTGAAGGCGGCTTTGGACCGGTTTACAAGGGGTTTGTTGATGACAATCTTAGGCCTGGAAAATTGAAGGCTCAGCCTGTAGCCGTCAAACTATTAGACTTGGATGGCTTTCAAGGCCATAGGGAGTGGCTGGCAGAACTTGTTTTTCTTGGACAGCTGAGGCATCCCAATATTGTTAAGCTGATCGGATATTGTTGCGAAGAGGAGCATAGGCTTTTGGTATACGAATACATAGCCAGAGGAAGCTTGGAAGATCAACTCTTCAGAAGATATTCTGCTGCTCTTCCATGGTCAACGAGAATGAAAATCGCAGTTGGGGCGGCTAAGGGCCTAGCCTTCCTGCATGAAGATCATAGGCCTGTCATATTCAGGGATTTTAAAACTTCAAATGTTCTGCTAGACTCTGATTATACAGCAAAACTTTCGGATTTTGGGTTAGCAAAGGATGGCCCAGAAGGAGAAGAAACTCATGTGGTAACACGTATCCTAGGGACTCAAGGGTATGCAGCCCCTGAATACGTAAGGACAGGTCACTTAACAACCAAGAGCGATGTGTATAGCTTTGGAGTAGTTCTATTAGAGCTGTTGACAGGTAAAAGGTCACTAGACAGAACCCGCCGGAGCCGTGAACAATCCCTTGTAGAATGGGCAAGGCCTCTGTTGAAGGACCCAAGAAAGCTTAACCGGATCATAGACCCGAGATTGGAGGGACAGTATTCCAGCAAAGGGGCTAGAAAGGCAGCTACAATGGCTTACACTTGCTTGAGCAACAACCCGAAGTCGAGGCCTATGATGACGGATGTGGTTATGATCTTGGAGTCTCTTCAGGGCTTCAACGAAGCGTTAACCTATCAACCATTTGTTTATGTCGCACCAAATGAAGAAAAGGACTGCAATGAAGACAAGGGAAAGTACCATTGCGGATACACCCTAAAAGAAGCTCTCACGACGGAATTGATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005351 GO:0005355 GO:0005402 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0008150 GO:0008324 GO:0008643 GO:0008645 GO:0015075 GO:0015077 GO:0015078 GO:0015144 GO:0015145 GO:0015149 GO:0015291 GO:0015293 GO:0015294 GO:0015295 GO:0015318 GO:0015672 GO:0015749 GO:0016020 GO:0022804 GO:0022857 GO:0022890 GO:0034219 GO:0034220 GO:0044464 GO:0046323 GO:0051119 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071944 GO:0098655 GO:0098660 GO:0098662 GO:1902600 GO:1904659

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Sugar_tr

Protein Analysis

364

Amino Acids

40.95

Weight (kDa)

6.52

Isoelectric Point (pI)

28.89

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PK_Tyr_Ser-Thr	PF07714	41 - 314	4.2e-45	Protein tyrosine and serine/threonine kinase
Pkinase	PF00069	42 - 313	7.1e-44	Protein kinase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001981)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G01820
fragaria_vesca	FvH4_6g53130
malus_domestica	MD06G1144200.v1.1 MD09G1013900.v1.1 MD09G1014300.v1.1 MD17G1014400.v1.1
prunus_persica	Prupe.3G303400_v2.0.a1
pyrus_communis	pycom06g13370 pycom07g09870
rosa_chinensis	RchiOBHm_Chr2g0175001 RchiOBHm_Chr7g0190491
rosa_laevigata	RLG00000004522 RLG00000010233 RLG00000022307 RLG00000022322
rosa_multiflora	Rmu_co7982852.1_g000001 Rmu_sc0001716.1_g000035 Rmu_sc0003920.1_g000002 Rmu_sc0010642.1_g000002 Rmu_sc0010806.1_g000001 Rmu_sc0014601.1_g000013 Rmu_sc0020514.1_g000002
rosa_roxburghii	Rroxscaffold_2G00077590 Rroxscaffold_3G00264550 Rroxscaffold_7G00211240
rosa_rugosa	Rorug02G0581000 Rorug05G0549400 Rorug06G0504900 Rorug06G0505000 Rorug06G0505000
rosa_samantha	Rh2AG661800 Rh2BG673100 Rh2CG416400 Rh2CG636200 Rh2DG686700 Rh6AG066000 Rh6BG058800 Rh6BG059000 Rh6BG059100 Rh7AG111000 Rh7BG113900 Rh7CG116000 Rh7DG114800
rosa_wichuraiana	Rw2G054250 Rw7G009690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	354
AciI	CCGC	5 cut(s)	86, 141, 452, 748, 1053
AclWI	GGATC	2 cut(s)	14, 827
AcuI	CTGAAG	2 cut(s)	379, 941
AcvI	CACGTG	1 cut(s)	73
AfaI	GTAC	1 cut(s)	1046
AfiI	CCNNNNNNNGG	2 cut(s)	835, 858
AflIII	ACRYGT	2 cut(s)	72, 611
AgeI	ACCGGT	1 cut(s)	151
AgsI	TTSAA	5 cut(s)	199, 245, 519, 796, 967
AjnI	CCWGG	1 cut(s)	187
AjuI	GAANNNNNNNTTGG	2 cut(s)	129, 161
Alw26I	GTCTC	1 cut(s)	957
AlwI	GGATC	2 cut(s)	14, 827
AlwNI	CAGNNNCTG	1 cut(s)	644
Ama87I	CYCGRG	1 cut(s)	829
AoxI	GGCC	8 cut(s)	58, 185, 247, 460, 488, 580, 785, 917
ApeKI	GCWGC	3 cut(s)	410, 638, 872
AsiGI	ACCGGT	1 cut(s)	151
Asp700I	GAANNNNTTC	1 cut(s)	403
AspA2I	CCTAGG	1 cut(s)	619
AspS9I	GGNCC	4 cut(s)	149, 460, 581, 799
AsuHPI	GGTGA	1 cut(s)	146
AvaI	CYCGRG	1 cut(s)	829
AvaII	GGWCC	2 cut(s)	149, 799
AvrII	CCTAGG	1 cut(s)	619
BbrPI	CACGTG	1 cut(s)	73
BbsI	GAAGAC	1 cut(s)	1038
BbvCI	CCTCAGC	1 cut(s)	290
BbvI	GCAGC	3 cut(s)	397, 650, 884
BccI	CCATC	2 cut(s)	230, 572
BceAI	ACGGC	2 cut(s)	200, 741
BcgI	CGANNNNNNTGC	2 cut(s)	537, 571
BciT130I	CCWGG	1 cut(s)	189
BciVI	GTATCC	2 cut(s)	626, 1049
BcoDI	GTCTC	1 cut(s)	957
BfaI	CTAG	6 cut(s)	83, 464, 530, 620, 737, 864
BfmI	CTRYAG	1 cut(s)	210
BfuI	GTATCC	2 cut(s)	626, 1049
BisI	GCNGC	5 cut(s)	142, 411, 453, 639, 873
BlnI	CCTAGG	1 cut(s)	619
BlpI	GCTNAGC	1 cut(s)	204
BlsI	GCNGC	5 cut(s)	143, 412, 454, 640, 874
Bme1390I	CCNGG	1 cut(s)	189
Bme18I	GGWCC	2 cut(s)	149, 799
BmeT110I	CYCGRG	1 cut(s)	829
BmgT120I	GGNCC	4 cut(s)	149, 460, 581, 799
BmiI	GGNNCC	2 cut(s)	755, 801
BmrFI	CCNGG	1 cut(s)	189
BmsI	GCATC	1 cut(s)	304
BpiI	GAAGAC	1 cut(s)	1038
Bpu10I	CCTNAGC	2 cut(s)	290, 456
Bpu1102I	GCTNAGC	1 cut(s)	204
BpuEI	CTTGAG	2 cut(s)	612, 916
BsaAI	YACGTR	3 cut(s)	73, 614, 652
BsaBI	GATNNNNATC	1 cut(s)	177
BsaJI	CCNNGG	2 cut(s)	419, 619
BsaWI	WCCGGW	2 cut(s)	151, 816
BsaXI	ACNNNNNCTCC	2 cut(s)	830, 860
Bsc4I	CCNNNNNNNGG	2 cut(s)	835, 858
Bse118I	RCCGGY	1 cut(s)	151
Bse3DI	GCAATG	2 cut(s)	1033, 1048
Bse8I	GATNNNNATC	1 cut(s)	177
BseBI	CCWGG	1 cut(s)	189
BseDI	CCNNGG	2 cut(s)	419, 619
BseGI	GGATG	5 cut(s)	13, 241, 295, 583, 937
BseJI	GATNNNNATC	1 cut(s)	177
BseLI	CCNNNNNNNGG	2 cut(s)	835, 858
BseMI	GCAATG	2 cut(s)	1033, 1048
BseMII	CTCAG	2 cut(s)	218, 281
BseRI	GAGGAG	1 cut(s)	350
BseXI	GCAGC	3 cut(s)	397, 650, 884
BseYI	CCCAGC	1 cut(s)	23
BshFI	GGCC	8 cut(s)	60, 187, 249, 462, 490, 582, 787, 919
BshTI	ACCGGT	1 cut(s)	151
BsiHKCI	CYCGRG	1 cut(s)	829
BsiSI	CCGG	4 cut(s)	57, 152, 751, 817
BslFI	GGGAC	2 cut(s)	637, 855
BslI	CCNNNNNNNGG	2 cut(s)	835, 858
BsmAI	GTCTC	1 cut(s)	957
BsmFI	GGGAC	2 cut(s)	637, 855
BsnI	GGCC	8 cut(s)	60, 187, 249, 462, 490, 582, 787, 919
BsoBI	CYCGRG	1 cut(s)	829
Bsp143I	GATC	7 cut(s)	19, 37, 315, 385, 481, 819, 942
Bsp1720I	GCTNAGC	1 cut(s)	204
Bsp19I	CCATGG	1 cut(s)	419
BspACI	CCGC	5 cut(s)	86, 141, 452, 748, 1053
BspANI	GGCC	8 cut(s)	60, 187, 249, 462, 490, 582, 787, 919
BspCNI	CTCAG	2 cut(s)	217, 282
BspLI	GGNNCC	2 cut(s)	755, 801
BspPI	GGATC	2 cut(s)	14, 827
BspQI	GCTCTTC	1 cut(s)	420
BsrDI	GCAATG	2 cut(s)	1033, 1048
BsrFI	RCCGGY	1 cut(s)	151
BssAI	RCCGGY	1 cut(s)	151
BssECI	CCNNGG	2 cut(s)	419, 619
BssMI	GATC	7 cut(s)	19, 37, 315, 385, 481, 819, 942
BssNAI	GTATAC	1 cut(s)	355
BssT1I	CCWWGG	2 cut(s)	419, 619
Bst1107I	GTATAC	1 cut(s)	355
Bst2UI	CCWGG	1 cut(s)	189
Bst4CI	ACNGT	1 cut(s)	846
Bst6I	CTCTTC	4 cut(s)	327, 398, 420, 960
BstBAI	YACGTR	3 cut(s)	73, 614, 652
BstC8I	GCNNGC	1 cut(s)	264
BstDEI	CTNAG	4 cut(s)	182, 204, 290, 456
BstDSI	CCRYGG	1 cut(s)	419
BstF5I	GGATG	5 cut(s)	13, 241, 295, 583, 937
BstKTI	GATC	7 cut(s)	22, 40, 318, 388, 484, 822, 945
BstMAI	GTCTC	1 cut(s)	957
BstMBI	GATC	7 cut(s)	19, 37, 315, 385, 481, 819, 942
BstMWI	GCNNNNNNNGC	5 cut(s)	24, 246, 449, 869, 881
BstNI	CCWGG	1 cut(s)	189
BstSCI	CCNGG	1 cut(s)	187
BstSFI	CTRYAG	1 cut(s)	210
BstSNI	TACGTA	1 cut(s)	652
BstV1I	GCAGC	3 cut(s)	397, 650, 884
BstV2I	GAAGAC	1 cut(s)	1038
BstZ17I	GTATAC	1 cut(s)	355
BsuI	GTATCC	2 cut(s)	626, 1049
BsuRI	GGCC	8 cut(s)	60, 187, 249, 462, 490, 582, 787, 919
BtgI	CCRYGG	1 cut(s)	419
BtgZI	GCGATG	1 cut(s)	696
BtsCI	GGATG	5 cut(s)	13, 241, 295, 583, 937
Cac8I	GCNNGC	1 cut(s)	264
CaiI	CAGNNNCTG	1 cut(s)	644
Cfr10I	RCCGGY	1 cut(s)	151
Cfr13I	GGNCC	4 cut(s)	149, 460, 581, 799
Csp6I	GTAC	1 cut(s)	1045
CspAI	ACCGGT	1 cut(s)	151
CviAII	CATG	4 cut(s)	117, 420, 476, 602
CviQI	GTAC	1 cut(s)	1045
DdeI	CTNAG	4 cut(s)	182, 204, 290, 456
DpnI	GATC	7 cut(s)	21, 39, 317, 387, 483, 821, 944
DpnII	GATC	7 cut(s)	19, 37, 315, 385, 481, 819, 942
DraI	TTTAAA	1 cut(s)	511
Eam1104I	CTCTTC	4 cut(s)	327, 398, 420, 960
EarI	CTCTTC	4 cut(s)	327, 398, 420, 960
Eco105I	TACGTA	1 cut(s)	652
Eco130I	CCWWGG	2 cut(s)	419, 619
Eco147I	AGGCCT	4 cut(s)	187, 490, 787, 919
Eco47I	GGWCC	2 cut(s)	149, 799
Eco57I	CTGAAG	2 cut(s)	379, 941
Eco72I	CACGTG	1 cut(s)	73
Eco88I	CYCGRG	1 cut(s)	829
EcoO109I	RGGNCCY	2 cut(s)	460, 799
EcoRII	CCWGG	1 cut(s)	187
EcoT14I	CCWWGG	2 cut(s)	419, 619
ErhI	CCWWGG	2 cut(s)	419, 619
FaeI	CATG	4 cut(s)	120, 423, 479, 605
FaqI	GGGAC	2 cut(s)	637, 855
FatI	CATG	4 cut(s)	116, 419, 475, 601
FauI	CCCGC	1 cut(s)	755
FblI	GTMKAC	1 cut(s)	354
Fnu4HI	GCNGC	5 cut(s)	142, 411, 453, 639, 873
FokI	GGATG	5 cut(s)	20, 248, 282, 590, 944
Fsp4HI	GCNGC	5 cut(s)	142, 411, 453, 639, 873
FspBI	CTAG	6 cut(s)	83, 464, 530, 620, 737, 864
GluI	GCNGC	5 cut(s)	142, 411, 453, 639, 873
GsaI	CCCAGC	1 cut(s)	27
HaeIII	GGCC	8 cut(s)	60, 187, 249, 462, 490, 582, 787, 919
HapII	CCGG	4 cut(s)	57, 152, 751, 817
Hin1II	CATG	4 cut(s)	120, 423, 479, 605
HincII	GTYRAC	3 cut(s)	426, 720, 978
HindII	GTYRAC	3 cut(s)	426, 720, 978
HindIII	AAGCTT	2 cut(s)	376, 809
HinfI	GANTC	3 cut(s)	533, 625, 950
HpaI	GTTAAC	1 cut(s)	978
HpaII	CCGG	4 cut(s)	57, 152, 751, 817
HphI	GGTGA	1 cut(s)	146
Hpy166II	GTNNAC	6 cut(s)	157, 355, 426, 720, 761, 978
Hpy188I	TCNGA	5 cut(s)	7, 320, 398, 538, 559
Hpy188III	TCNNGA	1 cut(s)	1078
Hpy8I	GTNNAC	6 cut(s)	157, 355, 426, 720, 761, 978
Hpy99I	CGWCG	1 cut(s)	1084
HpyAV	CCTTC	6 cut(s)	77, 131, 193, 478, 581, 790
HpyCH4III	ACNGT	1 cut(s)	846
HpyCH4IV	ACGT	3 cut(s)	72, 613, 651
HpyCH4V	TGCA	5 cut(s)	32, 101, 475, 638, 1026
HpyF10VI	GCNNNNNNNGC	5 cut(s)	24, 246, 449, 869, 881
HpyF3I	CTNAG	4 cut(s)	182, 204, 290, 456
HpySE526I	ACGT	3 cut(s)	72, 613, 651
Hsp92II	CATG	4 cut(s)	120, 423, 479, 605
KspAI	GTTAAC	1 cut(s)	978
Kzo9I	GATC	7 cut(s)	19, 37, 315, 385, 481, 819, 942
LguI	GCTCTTC	1 cut(s)	420
LmnI	GCTCC	3 cut(s)	88, 337, 753
Lsp1109I	GCAGC	3 cut(s)	397, 650, 884
LweI	GCATC	1 cut(s)	304
MaeI	CTAG	6 cut(s)	83, 464, 530, 620, 737, 864
MaeII	ACGT	3 cut(s)	72, 613, 651
MaeIII	GTNAC	3 cut(s)	607, 662, 732
MalI	GATC	7 cut(s)	21, 39, 317, 387, 483, 821, 944
MboI	GATC	7 cut(s)	19, 37, 315, 385, 481, 819, 942
MluCI	AATT	5 cut(s)	12, 46, 124, 194, 1085
MlyI	GAGTC	3 cut(s)	527, 619, 959
MnlI	CCTC	6 cut(s)	285, 328, 365, 798, 832, 909
MroXI	GAANNNNTTC	1 cut(s)	403
MseI	TTAA	6 cut(s)	93, 309, 510, 668, 813, 977
MspA1I	CMGCKG	1 cut(s)	289
MspI	CCGG	4 cut(s)	57, 152, 751, 817
MspR9I	CCNGG	1 cut(s)	189
MvaI	CCWGG	1 cut(s)	189
MwoI	GCNNNNNNNGC	5 cut(s)	24, 246, 449, 869, 881
NcoI	CCATGG	1 cut(s)	419
NdeII	GATC	7 cut(s)	19, 37, 315, 385, 481, 819, 942
NlaIII	CATG	4 cut(s)	120, 423, 479, 605
NlaIV	GGNNCC	2 cut(s)	755, 801
NmuCI	GTSAC	2 cut(s)	662, 732
PceI	AGGCCT	4 cut(s)	187, 490, 787, 919
PciSI	GCTCTTC	1 cut(s)	420
PdmI	GAANNNNTTC	1 cut(s)	403
PinAI	ACCGGT	1 cut(s)	151
PkrI	GCNGC	5 cut(s)	143, 412, 454, 640, 874
PleI	GAGTC	3 cut(s)	527, 619, 958
PmaCI	CACGTG	1 cut(s)	73
PmlI	CACGTG	1 cut(s)	73
PpsI	GAGTC	3 cut(s)	527, 619, 958
Ppu21I	YACGTR	3 cut(s)	73, 614, 652
PpuMI	RGGWCCY	1 cut(s)	799
Psp5II	RGGWCCY	1 cut(s)	799
Psp6I	CCWGG	1 cut(s)	187
PspCI	CACGTG	1 cut(s)	73
PspFI	CCCAGC	1 cut(s)	23
PspGI	CCWGG	1 cut(s)	187
PspN4I	GGNNCC	2 cut(s)	755, 801
PspPI	GGNCC	4 cut(s)	149, 460, 581, 799
PspPPI	RGGWCCY	1 cut(s)	799
PstNI	CAGNNNCTG	1 cut(s)	644
PvuII	CAGCTG	1 cut(s)	289
RsaI	GTAC	1 cut(s)	1046
RsaNI	GTAC	1 cut(s)	1045
SapI	GCTCTTC	1 cut(s)	420
SaqAI	TTAA	6 cut(s)	93, 309, 510, 668, 813, 977
SatI	GCNGC	5 cut(s)	142, 411, 453, 639, 873
Sau3AI	GATC	7 cut(s)	19, 37, 315, 385, 481, 819, 942
Sau96I	GGNCC	4 cut(s)	149, 460, 581, 799
SchI	GAGTC	3 cut(s)	527, 619, 959
ScrFI	CCNGG	1 cut(s)	189
SfaNI	GCATC	1 cut(s)	304
SfcI	CTRYAG	1 cut(s)	210
SinI	GGWCC	2 cut(s)	149, 799
SmlI	CTYRAG	2 cut(s)	627, 895
SmoI	CTYRAG	2 cut(s)	627, 895
SnaBI	TACGTA	1 cut(s)	652
Sse9I	AATT	5 cut(s)	12, 46, 124, 194, 1085
SseBI	AGGCCT	4 cut(s)	187, 490, 787, 919
SsiI	CCGC	5 cut(s)	86, 141, 452, 748, 1053
SspI	AATATT	1 cut(s)	304
SspMI	CTAG	6 cut(s)	83, 464, 530, 620, 737, 864
StuI	AGGCCT	4 cut(s)	187, 490, 787, 919
StyD4I	CCNGG	1 cut(s)	187
StyI	CCWWGG	2 cut(s)	419, 619
TaaI	ACNGT	1 cut(s)	846
TaiI	ACGT	3 cut(s)	75, 616, 654
TaqI	TCGA	1 cut(s)	914
TasI	AATT	5 cut(s)	12, 46, 124, 194, 1085
TauI	GCSGC	2 cut(s)	144, 455
Tru1I	TTAA	6 cut(s)	93, 309, 510, 668, 813, 977
Tru9I	TTAA	6 cut(s)	93, 309, 510, 668, 813, 977
TseFI	GTSAC	2 cut(s)	662, 732
TseI	GCWGC	3 cut(s)	410, 638, 872
Tsp45I	GTSAC	2 cut(s)	662, 732
TspDTI	ATGAA	5 cut(s)	105, 449, 492, 1026, 1044
TspGWI	ACGGA	1 cut(s)	944
VpaK11BI	GGWCC	2 cut(s)	149, 799
XcmI	CCANNNNNNNNNTGG	1 cut(s)	376
XmaJI	CCTAGG	1 cut(s)	619
XmiI	GTMKAC	1 cut(s)	354
XmnI	GAANNNNTTC	1 cut(s)	403
XspI	CTAG	6 cut(s)	83, 464, 530, 620, 737, 864

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.