Rorug05G0549400

Belongs to the adenylate kinase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0001981
Physical Location & Seq
Reverse (-)
73790604 .. 73791041
438 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0549400.1

Sequence Viewer

Length: 294 bp
ATGAATCCAGATATTATAGACAAGGTTGGGGTTGTTCTTGAACTTGTGGCAAGTAATCGAACTAGTATTCCGGCAACCAAGGCAGTAGAAATACTAAATAGTCGTGTGCAACATGAAGTCATCAAGACTGGGTTTCACAATGTGGGGACTTCAGCTGCAGAATTAAGGCTGTTCAGGTCAGTTGTGGAATGTTGTTTTCTTGGAAATGAAGATCCTGTAACAGTTGCCAGGAGGTTAAAACTGGATCGTAAAATGTACCGGTTGATGAACAAGATTCAAGCTTTGTGTTTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00230 ko00730 ko01100 ko01110 ko01130 map00230 map00730 map01100 map01110 map01130
Pfam Domains
Protein Families
ADK

Protein Analysis

97

Amino Acids

10.87

Weight (kDa)

9.25

Isoelectric Point (pI)

37.04

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 2 cut(s) 206, 252
AcuI CTGAAG 1 cut(s) 135
AdeI CACNNNGTG 1 cut(s) 142
AfaI GTAC 1 cut(s) 257
AgeI ACCGGT 1 cut(s) 258
AgsI TTSAA 2 cut(s) 41, 278
AhlI ACTAGT 1 cut(s) 62
AjnI CCWGG 1 cut(s) 227
AloI GAACNNNNNNTCC 2 cut(s) 52, 84
AluBI AGCT 2 cut(s) 155, 281
AluI AGCT 2 cut(s) 155, 281
AlwI GGATC 2 cut(s) 206, 252
ApeKI GCWGC 1 cut(s) 155
AsiGI ACCGGT 1 cut(s) 258
BbvI GCAGC 1 cut(s) 142
BciT130I CCWGG 1 cut(s) 229
BcuI ACTAGT 1 cut(s) 62
BfaI CTAG 1 cut(s) 63
BfmI CTRYAG 1 cut(s) 156
BisI GCNGC 1 cut(s) 156
BlsI GCNGC 1 cut(s) 157
Bme1390I CCNGG 1 cut(s) 229
BmrFI CCNGG 1 cut(s) 229
BmrI ACTGGG 1 cut(s) 138
BmuI ACTGGG 1 cut(s) 138
BsaJI CCNNGG 1 cut(s) 78
BsaWI WCCGGW 1 cut(s) 258
Bse118I RCCGGY 1 cut(s) 258
Bse1I ACTGG 2 cut(s) 133, 246
BseBI CCWGG 1 cut(s) 229
BseDI CCNNGG 1 cut(s) 78
BseNI ACTGG 2 cut(s) 133, 246
BseXI GCAGC 1 cut(s) 142
BshTI ACCGGT 1 cut(s) 258
BsiSI CCGG 2 cut(s) 71, 259
BslFI GGGAC 1 cut(s) 160
BsmFI GGGAC 1 cut(s) 160
Bsp143I GATC 2 cut(s) 211, 244
BspMAI CTGCAG 1 cut(s) 160
BspPI GGATC 2 cut(s) 206, 252
BsrFI RCCGGY 1 cut(s) 258
BsrI ACTGG 2 cut(s) 133, 246
BssAI RCCGGY 1 cut(s) 258
BssECI CCNNGG 1 cut(s) 78
BssMI GATC 2 cut(s) 211, 244
BssT1I CCWWGG 1 cut(s) 78
Bst2UI CCWGG 1 cut(s) 229
Bst4CI ACNGT 1 cut(s) 223
BstKTI GATC 2 cut(s) 214, 247
BstMBI GATC 2 cut(s) 211, 244
BstMWI GCNNNNNNNGC 1 cut(s) 80
BstNI CCWGG 1 cut(s) 229
BstSCI CCNGG 1 cut(s) 227
BstSFI CTRYAG 1 cut(s) 156
BstV1I GCAGC 1 cut(s) 142
BstX2I RGATCY 1 cut(s) 211
BstYI RGATCY 1 cut(s) 211
Cfr10I RCCGGY 1 cut(s) 258
Csp6I GTAC 1 cut(s) 256
CspAI ACCGGT 1 cut(s) 258
CviAII CATG 1 cut(s) 113
CviJI RGCY 3 cut(s) 155, 169, 281
CviKI_1 RGCY 3 cut(s) 155, 169, 281
CviQI GTAC 1 cut(s) 256
DpnI GATC 2 cut(s) 213, 246
DpnII GATC 2 cut(s) 211, 244
DraIII CACNNNGTG 1 cut(s) 142
Eco130I CCWWGG 1 cut(s) 78
Eco57I CTGAAG 1 cut(s) 135
EcoRII CCWGG 1 cut(s) 227
EcoT14I CCWWGG 1 cut(s) 78
ErhI CCWWGG 1 cut(s) 78
FaeI CATG 1 cut(s) 116
FaiI YATR 2 cut(s) 17, 114
FaqI GGGAC 1 cut(s) 160
FatI CATG 1 cut(s) 112
Fnu4HI GCNGC 1 cut(s) 156
Fsp4HI GCNGC 1 cut(s) 156
FspBI CTAG 1 cut(s) 63
GluI GCNGC 1 cut(s) 156
HapII CCGG 2 cut(s) 71, 259
Hin1II CATG 1 cut(s) 116
HindIII AAGCTT 1 cut(s) 279
HinfI GANTC 2 cut(s) 4, 274
HpaII CCGG 2 cut(s) 71, 259
Hpy188III TCNNGA 3 cut(s) 8, 38, 124
HpyCH4III ACNGT 1 cut(s) 223
HpyCH4V TGCA 2 cut(s) 109, 158
HpyF10VI GCNNNNNNNGC 1 cut(s) 80
Hsp92II CATG 1 cut(s) 116
Kzo9I GATC 2 cut(s) 211, 244
LpnPI CCDG 9 cut(s) 21, 84, 114, 160, 214, 227, 228, 241, 272
Lsp1109I GCAGC 1 cut(s) 142
MaeI CTAG 1 cut(s) 63
MaeIII GTNAC 1 cut(s) 217
MalI GATC 2 cut(s) 213, 246
MboI GATC 2 cut(s) 211, 244
MboII GAAGA 1 cut(s) 221
MflI RGATCY 1 cut(s) 211
MluCI AATT 1 cut(s) 161
MnlI CCTC 1 cut(s) 225
MseI TTAA 2 cut(s) 164, 236
MspA1I CMGCKG 1 cut(s) 155
MspI CCGG 2 cut(s) 71, 259
MspR9I CCNGG 1 cut(s) 229
MvaI CCWGG 1 cut(s) 229
MwoI GCNNNNNNNGC 1 cut(s) 80
NdeII GATC 2 cut(s) 211, 244
NlaIII CATG 1 cut(s) 116
PfeI GAWTC 2 cut(s) 4, 274
PinAI ACCGGT 1 cut(s) 258
PkrI GCNGC 1 cut(s) 157
Psp6I CCWGG 1 cut(s) 227
PspGI CCWGG 1 cut(s) 227
PstI CTGCAG 1 cut(s) 160
PsuI RGATCY 1 cut(s) 211
PvuII CAGCTG 1 cut(s) 155
RsaI GTAC 1 cut(s) 257
RsaNI GTAC 1 cut(s) 256
SaqAI TTAA 2 cut(s) 164, 236
SatI GCNGC 1 cut(s) 156
Sau3AI GATC 2 cut(s) 211, 244
ScrFI CCNGG 1 cut(s) 229
SetI ASST 5 cut(s) 27, 157, 179, 236, 283
SfcI CTRYAG 1 cut(s) 156
SpeI ACTAGT 1 cut(s) 62
Sse9I AATT 1 cut(s) 161
SspMI CTAG 1 cut(s) 63
StyD4I CCNGG 1 cut(s) 227
StyI CCWWGG 1 cut(s) 78
TaaI ACNGT 1 cut(s) 223
TaqI TCGA 1 cut(s) 58
TasI AATT 1 cut(s) 161
TfiI GAWTC 2 cut(s) 4, 274
Tru1I TTAA 2 cut(s) 164, 236
Tru9I TTAA 2 cut(s) 164, 236
TseI GCWGC 1 cut(s) 155
TspDTI ATGAA 4 cut(s) 17, 129, 222, 281
XspI CTAG 1 cut(s) 63
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.