AT3G01820

adenylate kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0001981
Physical Location & Seq
Reverse (-)
293754 .. 295724
1971 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G01820.1

Sequence Viewer

Length: 792 bp
ATGGCCTGGCTTAGCCGCGTGAGAGGAGTTTCGCCGGTGACAAGGCTCGCAGCGATTCGTCGATCTTTTGGATCAGCGGCCGCGTTGGAGTTTGACTACGACTCCGATGACGAGTACTTGTACGGAGATGATCGCCGCCTCGCGGAACCGAGGCTTGGGTTGGATGGATCGGGGCCGGATAGAGGAGTGCAGTGGGTGCTTATGGGAGCCCCTGGAGCATGGAGGCACGTCTTCGCCGAGAGGCTCTCCAAACTGCTTGAAGTTCCTCACATTTCCATGGGGTCCCTTGTCCGTCAAGAACTCAACCCTAGATCTTCTCTCTACAAGGAGATTGCAAGTGCTGTAAATGAACGAAAGCTGGTTCCAAAGAGTGTTGTGTTTGCGTTGCTATCAAAGAGGCTCGAAGAAGGCTATGCAAGAGGGGAAACTGGTTTCATTCTTCATGGCATTCCTCGCACTCGTTTTCAAGCCGAAACTCTTGATCAAATCGCTCAGATTGACCTCGTTGTCAATCTCAAATGCTCTGAAGACCATCTGGTAAACCGGAATGAAACAGCTCTGCCTCAGCAGGAGTTCCTCGGCTCTATGTTACACTCACCTGTTGCAATCAATGCTCGGAGGGAGAGTGTCGGTGTCTACGCACAGGAGGTGGAAGAATACTATAGGAAGCAGAGGAAACTGCTAGACTTTCATGTTGGCGGTGCCACATCAGCAGACACATGGCAGGGCTTGTTGGCAGCTTTACATCTGAAGCAGGTGAATTTGACGACTTCACAGAAGCTAACTCTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00230 ko00730 ko01100 ko01110 ko01130 map00230 map00730 map01100 map01110 map01130
Pfam Domains
Protein Families
ADK

Protein Analysis

263

Amino Acids

29.45

Weight (kDa)

7.89

Isoelectric Point (pI)

40.68

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ADK PF00406 67 - 224 2.9e-22 Adenylate kinase
AAA_17 PF13207 69 - 182 2e-11 AAA domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 745
AasI GACNNNNNNGTC 1 cut(s) 506
Acc36I ACCTGC 1 cut(s) 745
AccB1I GGYRCC 1 cut(s) 701
AccI GTMKAC 1 cut(s) 636
AccII CGCG 3 cut(s) 18, 83, 143
AciI CCGC 6 cut(s) 16, 77, 81, 136, 143, 699
AclWI GGATC 2 cut(s) 79, 175
AcoI YGGCCR 1 cut(s) 78
AcsI RAATTY 1 cut(s) 760
AcuI CTGAAG 2 cut(s) 546, 770
AfaI GTAC 2 cut(s) 116, 122
AfiI CCNNNNNNNGG 3 cut(s) 142, 155, 182
AgsI TTSAA 2 cut(s) 260, 467
AjiI CACGTC 1 cut(s) 229
AjnI CCWGG 2 cut(s) 5, 211
AjuI GAANNNNNNNTTGG 2 cut(s) 138, 170
AluBI AGCT 4 cut(s) 358, 557, 740, 781
AluI AGCT 4 cut(s) 358, 557, 740, 781
AlwI GGATC 2 cut(s) 79, 175
AoxI GGCC 3 cut(s) 3, 78, 173
ApeKI GCWGC 2 cut(s) 50, 737
ApoI RAATTY 1 cut(s) 760
AspS9I GGNCC 2 cut(s) 173, 282
AsuHPI GGTGA 3 cut(s) 49, 588, 769
AvaII GGWCC 1 cut(s) 282
BanI GGYRCC 1 cut(s) 701
BanII GRGCYC 1 cut(s) 211
BbsI GAAGAC 2 cut(s) 223, 534
BbvCI CCTCAGC 1 cut(s) 564
BbvI GCAGC 2 cut(s) 62, 749
BccI CCATC 2 cut(s) 158, 540
BciT130I CCWGG 2 cut(s) 7, 213
BclI TGATCA 1 cut(s) 481
BfaI CTAG 2 cut(s) 309, 683
BfmI CTRYAG 1 cut(s) 661
BfuAI ACCTGC 1 cut(s) 745
BglII AGATCT 1 cut(s) 311
BisI GCNGC 6 cut(s) 16, 51, 78, 81, 136, 738
BlpI GCTNAGC 1 cut(s) 11
BlsI GCNGC 6 cut(s) 17, 52, 79, 82, 137, 739
BmcAI AGTACT 1 cut(s) 116
Bme1390I CCNGG 2 cut(s) 7, 213
Bme18I GGWCC 1 cut(s) 282
BmgBI CACGTC 1 cut(s) 229
BmgT120I GGNCC 2 cut(s) 173, 282
BmiI GGNNCC 7 cut(s) 147, 174, 208, 283, 284, 363, 703
BmrFI CCNGG 2 cut(s) 7, 213
BpiI GAAGAC 2 cut(s) 223, 534
BplI GAGNNNNNCTC 2 cut(s) 230, 262
BpmI CTGGAG 1 cut(s) 234
Bpu10I CCTNAGC 1 cut(s) 564
Bpu1102I GCTNAGC 1 cut(s) 11
BsaJI CCNNGG 4 cut(s) 149, 211, 276, 577
BsaWI WCCGGW 1 cut(s) 543
BsaXI ACNNNNNCTCC 4 cut(s) 86, 116, 610, 640
Bsc4I CCNNNNNNNGG 3 cut(s) 142, 155, 182
Bse118I RCCGGY 1 cut(s) 34
Bse1I ACTGG 1 cut(s) 433
BseBI CCWGG 2 cut(s) 7, 213
BseDI CCNNGG 4 cut(s) 149, 211, 276, 577
BseGI GGATG 1 cut(s) 169
BseLI CCNNNNNNNGG 3 cut(s) 142, 155, 182
BseMII CTCAG 2 cut(s) 506, 578
BseNI ACTGG 1 cut(s) 433
BseRI GAGGAG 2 cut(s) 39, 198
BseX3I CGGCCG 1 cut(s) 78
BseXI GCAGC 2 cut(s) 62, 749
BsgI GTGCAG 1 cut(s) 209
Bsh1236I CGCG 3 cut(s) 18, 83, 143
Bsh1285I CGRYCG 1 cut(s) 81
BshFI GGCC 3 cut(s) 5, 80, 175
BshNI GGYRCC 1 cut(s) 701
BsiEI CGRYCG 1 cut(s) 81
BsiSI CCGG 3 cut(s) 35, 176, 544
BslFI GGGAC 1 cut(s) 268
BslI CCNNNNNNNGG 3 cut(s) 142, 155, 182
BsmFI GGGAC 1 cut(s) 268
BsmI GAATGC 1 cut(s) 447
BsnI GGCC 3 cut(s) 5, 80, 175
Bsp1286I GDGCHC 1 cut(s) 211
Bsp143I GATC 6 cut(s) 62, 71, 130, 167, 311, 481
Bsp1720I GCTNAGC 1 cut(s) 11
Bsp19I CCATGG 1 cut(s) 276
BspACI CCGC 6 cut(s) 16, 77, 81, 136, 143, 699
BspANI GGCC 3 cut(s) 5, 80, 175
BspCNI CTCAG 2 cut(s) 505, 577
BspFNI CGCG 3 cut(s) 18, 83, 143
BspLI GGNNCC 7 cut(s) 147, 174, 208, 283, 284, 363, 703
BspMI ACCTGC 1 cut(s) 745
BspPI GGATC 2 cut(s) 79, 175
BspT107I GGYRCC 1 cut(s) 701
BsrFI RCCGGY 1 cut(s) 34
BsrI ACTGG 1 cut(s) 433
BssAI RCCGGY 1 cut(s) 34
BssECI CCNNGG 4 cut(s) 149, 211, 276, 577
BssMI GATC 6 cut(s) 62, 71, 130, 167, 311, 481
BssT1I CCWWGG 1 cut(s) 276
Bst2UI CCWGG 2 cut(s) 7, 213
BstAPI GCANNNNNTGC 2 cut(s) 196, 611
BstC8I GCNNGC 1 cut(s) 48
BstDEI CTNAG 3 cut(s) 11, 492, 564
BstDSI CCRYGG 1 cut(s) 276
BstF5I GGATG 1 cut(s) 169
BstFNI CGCG 3 cut(s) 18, 83, 143
BstKTI GATC 6 cut(s) 65, 74, 133, 170, 314, 484
BstMBI GATC 6 cut(s) 62, 71, 130, 167, 311, 481
BstMCI CGRYCG 1 cut(s) 81
BstMWI GCNNNNNNNGC 5 cut(s) 196, 215, 453, 611, 710
BstNI CCWGG 2 cut(s) 7, 213
BstSCI CCNGG 2 cut(s) 5, 211
BstSFI CTRYAG 1 cut(s) 661
BstUI CGCG 3 cut(s) 18, 83, 143
BstV1I GCAGC 2 cut(s) 62, 749
BstV2I GAAGAC 2 cut(s) 223, 534
BstX2I RGATCY 1 cut(s) 311
BstYI RGATCY 1 cut(s) 311
BstZI CGGCCG 1 cut(s) 78
BsuRI GGCC 3 cut(s) 5, 80, 175
BtgI CCRYGG 1 cut(s) 276
BtrI CACGTC 1 cut(s) 229
BtsCI GGATG 1 cut(s) 169
BtsI GCAGTG 1 cut(s) 197
BtsIMutI CAGTG 1 cut(s) 197
BveI ACCTGC 1 cut(s) 745
Cac8I GCNNGC 1 cut(s) 48
CciNI GCGGCCGC 1 cut(s) 78
Cfr10I RCCGGY 1 cut(s) 34
Cfr13I GGNCC 2 cut(s) 173, 282
Csp6I GTAC 2 cut(s) 115, 121
CviAII CATG 5 cut(s) 219, 277, 443, 692, 720
CviQI GTAC 2 cut(s) 115, 121
DdeI CTNAG 3 cut(s) 11, 492, 564
DpnI GATC 6 cut(s) 64, 73, 132, 169, 313, 483
DpnII GATC 6 cut(s) 62, 71, 130, 167, 311, 481
DrdI GACNNNNNNGTC 1 cut(s) 506
DseDI GACNNNNNNGTC 1 cut(s) 506
EaeI YGGCCR 1 cut(s) 78
EagI CGGCCG 1 cut(s) 78
EclXI CGGCCG 1 cut(s) 78
Eco130I CCWWGG 1 cut(s) 276
Eco24I GRGCYC 1 cut(s) 211
Eco47I GGWCC 1 cut(s) 282
Eco52I CGGCCG 1 cut(s) 78
Eco57I CTGAAG 2 cut(s) 546, 770
EcoO109I RGGNCCY 1 cut(s) 282
EcoRII CCWGG 2 cut(s) 5, 211
EcoT14I CCWWGG 1 cut(s) 276
EcoT38I GRGCYC 1 cut(s) 211
ErhI CCWWGG 1 cut(s) 276
FaeI CATG 5 cut(s) 222, 280, 446, 695, 723
FaiI YATR 9 cut(s) 203, 220, 278, 414, 444, 587, 663, 693, 721
FaqI GGGAC 1 cut(s) 268
FatI CATG 5 cut(s) 218, 276, 442, 691, 719
FbaI TGATCA 1 cut(s) 481
FblI GTMKAC 1 cut(s) 636
Fnu4HI GCNGC 6 cut(s) 16, 51, 78, 81, 136, 738
FokI GGATG 1 cut(s) 176
FriOI GRGCYC 1 cut(s) 211
Fsp4HI GCNGC 6 cut(s) 16, 51, 78, 81, 136, 738
FspBI CTAG 2 cut(s) 309, 683
GluI GCNGC 6 cut(s) 16, 51, 78, 81, 136, 738
GsuI CTGGAG 1 cut(s) 234
HaeIII GGCC 3 cut(s) 5, 80, 175
HapII CCGG 3 cut(s) 35, 176, 544
Hin1II CATG 5 cut(s) 222, 280, 446, 695, 723
HinfI GANTC 2 cut(s) 55, 101
HpaII CCGG 3 cut(s) 35, 176, 544
HphI GGTGA 3 cut(s) 49, 588, 769
Hpy166II GTNNAC 2 cut(s) 541, 637
Hpy188I TCNGA 5 cut(s) 106, 495, 526, 618, 750
Hpy188III TCNNGA 2 cut(s) 296, 479
Hpy8I GTNNAC 2 cut(s) 541, 637
Hpy99I CGWCG 1 cut(s) 63
HpyAV CCTTC 1 cut(s) 401
HpyCH4IV ACGT 1 cut(s) 228
HpyCH4V TGCA 4 cut(s) 190, 335, 416, 605
HpyF10VI GCNNNNNNNGC 5 cut(s) 196, 215, 453, 611, 710
HpyF3I CTNAG 3 cut(s) 11, 492, 564
HpySE526I ACGT 1 cut(s) 228
Hsp92II CATG 5 cut(s) 222, 280, 446, 695, 723
KflI GGGWCCC 1 cut(s) 282
Ksp22I TGATCA 1 cut(s) 481
Kzo9I GATC 6 cut(s) 62, 71, 130, 167, 311, 481
LmnI GCTCC 2 cut(s) 206, 215
Lsp1109I GCAGC 2 cut(s) 62, 749
MaeI CTAG 2 cut(s) 309, 683
MaeII ACGT 1 cut(s) 228
MaeIII GTNAC 2 cut(s) 37, 588
MalI GATC 6 cut(s) 64, 73, 132, 169, 313, 483
MboI GATC 6 cut(s) 62, 71, 130, 167, 311, 481
MboII GAAGA 6 cut(s) 223, 306, 416, 431, 539, 665
MflI RGATCY 1 cut(s) 311
MhlI GDGCHC 1 cut(s) 211
MluCI AATT 1 cut(s) 760
MlyI GAGTC 1 cut(s) 95
MmeI TCCRAC 2 cut(s) 66, 141
MslI CAYNNNNRTG 1 cut(s) 275
MspA1I CMGCKG 1 cut(s) 77
MspI CCGG 3 cut(s) 35, 176, 544
MspR9I CCNGG 2 cut(s) 7, 213
Mva1269I GAATGC 1 cut(s) 447
MvaI CCWGG 2 cut(s) 7, 213
MvnI CGCG 3 cut(s) 18, 83, 143
MwoI GCNNNNNNNGC 5 cut(s) 196, 215, 453, 611, 710
NcoI CCATGG 1 cut(s) 276
NdeII GATC 6 cut(s) 62, 71, 130, 167, 311, 481
NlaIII CATG 5 cut(s) 222, 280, 446, 695, 723
NlaIV GGNNCC 7 cut(s) 147, 174, 208, 283, 284, 363, 703
NmeAIII GCCGAG 2 cut(s) 262, 558
NmuCI GTSAC 1 cut(s) 37
NotI GCGGCCGC 1 cut(s) 78
PaqCI CACCTGC 1 cut(s) 745
PcsI WCGNNNNNNNCGW 1 cut(s) 234
PctI GAATGC 1 cut(s) 447
PfeI GAWTC 1 cut(s) 55
PkrI GCNGC 6 cut(s) 17, 52, 79, 82, 137, 739
PleI GAGTC 1 cut(s) 95
PpsI GAGTC 1 cut(s) 95
PpuMI RGGWCCY 1 cut(s) 282
Psp5II RGGWCCY 1 cut(s) 282
Psp6I CCWGG 2 cut(s) 5, 211
PspGI CCWGG 2 cut(s) 5, 211
PspN4I GGNNCC 7 cut(s) 147, 174, 208, 283, 284, 363, 703
PspPI GGNCC 2 cut(s) 173, 282
PspPPI RGGWCCY 1 cut(s) 282
PsuI RGATCY 1 cut(s) 311
RsaI GTAC 2 cut(s) 116, 122
RsaNI GTAC 2 cut(s) 115, 121
RseI CAYNNNNRTG 1 cut(s) 275
SatI GCNGC 6 cut(s) 16, 51, 78, 81, 136, 738
Sau3AI GATC 6 cut(s) 62, 71, 130, 167, 311, 481
Sau96I GGNCC 2 cut(s) 173, 282
ScaI AGTACT 1 cut(s) 116
SchI GAGTC 1 cut(s) 95
ScrFI CCNGG 2 cut(s) 7, 213
SduI GDGCHC 1 cut(s) 211
SetI ASST 9 cut(s) 231, 360, 504, 559, 601, 651, 742, 759, 783
SfcI CTRYAG 1 cut(s) 661
SgrAI CRCCGGYG 1 cut(s) 34
SinI GGWCC 1 cut(s) 282
SmiMI CAYNNNNRTG 1 cut(s) 275
Sse9I AATT 1 cut(s) 760
SsiI CCGC 6 cut(s) 16, 77, 81, 136, 143, 699
SspMI CTAG 2 cut(s) 309, 683
StyD4I CCNGG 2 cut(s) 5, 211
StyI CCWWGG 1 cut(s) 276
TaiI ACGT 1 cut(s) 231
TaqI TCGA 2 cut(s) 61, 402
TasI AATT 1 cut(s) 760
TatI WGTACW 1 cut(s) 114
TauI GCSGC 4 cut(s) 18, 80, 83, 138
TfiI GAWTC 1 cut(s) 55
TscAI CASTG 1 cut(s) 197
TseFI GTSAC 1 cut(s) 37
TseI GCWGC 2 cut(s) 50, 737
Tsp45I GTSAC 1 cut(s) 37
TspDTI ATGAA 5 cut(s) 363, 424, 431, 564, 680
TspGWI ACGGA 2 cut(s) 138, 281
TspRI CASTG 1 cut(s) 197
VpaK11BI GGWCC 1 cut(s) 282
XapI RAATTY 1 cut(s) 760
XmiI GTMKAC 1 cut(s) 636
XspI CTAG 2 cut(s) 309, 683
ZrmI AGTACT 1 cut(s) 116
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.