Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0001981

Physical Location & Seq

Genomic Coordinates Reverse (-)

80740437 .. 80742024

Gene Structure 1588 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG636200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 678 bp

ATGGCCGGACTCAGCCGCCTCGAACTGGCCGCCGCGTCGCTGCTGAAGCGAAGCAGTTTCGGCCTCCAAGCGCCGCGCCGAGCCTACGGATCGGCCGCCGCGGCTCAGCTGGACTATTACTCCGACGAGGAAGAAGAGCATCAAACGGCGGTGGTGGACTCGGCCGGGTGGATCCCACGGAGAGGGATACATTGGGTGCTGATAGGAGATCGAGGTGCGAAGAAGCACTTGTACGCCGAGAGGCTCTCGAAGCTTCTGGAAGTTCCCCACATTTCTATGGGCACCCTCGTCCGCCAGGAGCTCAACCCTCGCTCTTCTCTCTACAAGCAGATTGCGAATGCGGTGAATGAAGGAAAGCTTGTTCAGGATGAAGTGATTTTCGCATTGTTGTCGAAAAGGCTCGAGGAAGGATACTACAGAGGTGAAAATGGATTCATTCTTGATGGGATTCCTCGAACTAGAATTCAAGCTGAGTTAGTTGACCAAATTGCGGAAATTGATCTAGTAGTGAATTTCAAATCCACTGATGACTTGGTGAAGAAGAATCTAGGAACTGGAAGCTTGGCTCTTAGTCAAGATTATCTGAGGATGAGTAACTCTATGCATGACGTAAATCTGCAGGAAGAACAACTGAAATCCGCAAATGCTGAGCAGGTATCGCGTTATTCTCTGTTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00230 ko00730 ko01100 ko01110 ko01130 map00230 map00730 map01100 map01110 map01130

Pfam Domains

Protein Families

ADK

Protein Analysis

225

Amino Acids

25.13

Weight (kDa)

6.0

Isoelectric Point (pI)

44.54

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ADK	PF00406	67 - 185	8.2e-21	Adenylate kinase
AAA_17	PF13207	78 - 179	4.2e-11	AAA domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001981)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G01820
fragaria_vesca	FvH4_6g53130
malus_domestica	MD06G1144200.v1.1 MD09G1013900.v1.1 MD09G1014300.v1.1 MD17G1014400.v1.1
prunus_persica	Prupe.3G303400_v2.0.a1
pyrus_communis	pycom06g13370 pycom07g09870
rosa_chinensis	RchiOBHm_Chr2g0175001 RchiOBHm_Chr7g0190491
rosa_laevigata	RLG00000004522 RLG00000010233 RLG00000022307 RLG00000022322
rosa_multiflora	Rmu_co7982852.1_g000001 Rmu_sc0001716.1_g000035 Rmu_sc0003920.1_g000002 Rmu_sc0010642.1_g000002 Rmu_sc0010806.1_g000001 Rmu_sc0014601.1_g000013 Rmu_sc0020514.1_g000002
rosa_roxburghii	Rroxscaffold_2G00077590 Rroxscaffold_3G00264550 Rroxscaffold_7G00211240
rosa_rugosa	Rorug02G0581000 Rorug05G0549400 Rorug06G0504900 Rorug06G0505000 Rorug06G0505000
rosa_samantha	Rh2AG661800 Rh2BG673100 Rh2CG416400 Rh2CG636200 Rh2DG686700 Rh6AG066000 Rh6BG058800 Rh6BG059000 Rh6BG059100 Rh7AG111000 Rh7BG113900 Rh7CG116000 Rh7DG114800
rosa_wichuraiana	Rw2G054250 Rw7G009690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	643
AccB1I	GGYRCC	1 cut(s)	281
AccII	CGCG	4 cut(s)	35, 76, 101, 661
AclWI	GGATC	3 cut(s)	97, 166, 179
AcoI	YGGCCR	4 cut(s)	3, 27, 93, 162
AcsI	RAATTY	2 cut(s)	462, 511
AcuI	CTGAAG	1 cut(s)	65
AfaI	GTAC	1 cut(s)	233
AfiI	CCNNNNNNNGG	3 cut(s)	25, 182, 490
AgsI	TTSAA	2 cut(s)	467, 517
AjnI	CCWGG	1 cut(s)	294
AloI	GAACNNNNNNTCC	2 cut(s)	345, 377
AluBI	AGCT	6 cut(s)	109, 253, 301, 358, 470, 561
AluI	AGCT	6 cut(s)	109, 253, 301, 358, 470, 561
Alw21I	GWGCWC	1 cut(s)	303
AlwI	GGATC	3 cut(s)	97, 166, 179
Ama87I	CYCGRG	1 cut(s)	401
AoxI	GGCC	5 cut(s)	3, 27, 61, 93, 162
ApeKI	GCWGC	1 cut(s)	40
ApoI	RAATTY	2 cut(s)	462, 511
AspLEI	GCGC	2 cut(s)	73, 78
AsuC2I	CCSGG	1 cut(s)	166
AsuHPI	GGTGA	3 cut(s)	355, 434, 547
AvaI	CYCGRG	1 cut(s)	401
BaeGI	GKGCMC	1 cut(s)	284
BamHI	GGATCC	1 cut(s)	171
BanI	GGYRCC	1 cut(s)	281
BanII	GRGCYC	1 cut(s)	303
BarI	GAAGNNNNNNTAC	2 cut(s)	215, 247
Bbv12I	GWGCWC	1 cut(s)	303
BbvI	GCAGC	1 cut(s)	27
BccI	CCATC	1 cut(s)	437
BceAI	ACGGC	1 cut(s)	162
BcgI	CGANNNNNNTGC	2 cut(s)	372, 406
BciT130I	CCWGG	1 cut(s)	296
BciVI	GTATCC	2 cut(s)	180, 404
BcnI	CCSGG	1 cut(s)	166
BfaI	CTAG	3 cut(s)	459, 503, 548
BfmI	CTRYAG	2 cut(s)	415, 617
BfoI	RGCGCY	1 cut(s)	74
BfuAI	ACCTGC	1 cut(s)	643
BfuI	GTATCC	2 cut(s)	180, 404
BglI	GCCNNNNNGGC	1 cut(s)	101
BisI	GCNGC	8 cut(s)	16, 30, 33, 41, 74, 96, 99, 102
BlpI	GCTNAGC	2 cut(s)	105, 648
BlsI	GCNGC	8 cut(s)	17, 31, 34, 42, 75, 97, 100, 103
Bme1390I	CCNGG	2 cut(s)	166, 296
BmeT110I	CYCGRG	1 cut(s)	401
BmiI	GGNNCC	2 cut(s)	173, 283
BmrFI	CCNGG	2 cut(s)	166, 296
BmsI	GCATC	1 cut(s)	148
BplI	GAGNNNNNCTC	2 cut(s)	230, 262
Bpu1102I	GCTNAGC	2 cut(s)	105, 648
BpuMI	CCSGG	1 cut(s)	166
BsaJI	CCNNGG	2 cut(s)	99, 176
BsaXI	ACNNNNNCTCC	2 cut(s)	104, 134
Bsc4I	CCNNNNNNNGG	3 cut(s)	25, 182, 490
Bse1I	ACTGG	2 cut(s)	30, 559
BseBI	CCWGG	1 cut(s)	296
BseDI	CCNNGG	2 cut(s)	99, 176
BseGI	GGATG	2 cut(s)	373, 594
BseLI	CCNNNNNNNGG	3 cut(s)	25, 182, 490
BseMII	CTCAG	5 cut(s)	25, 119, 462, 575, 639
BseNI	ACTGG	2 cut(s)	30, 559
BseSI	GKGCMC	1 cut(s)	284
BseX3I	CGGCCG	2 cut(s)	93, 162
BseXI	GCAGC	1 cut(s)	27
Bsh1236I	CGCG	4 cut(s)	35, 76, 101, 661
Bsh1285I	CGRYCG	2 cut(s)	96, 165
BshFI	GGCC	5 cut(s)	5, 29, 63, 95, 164
BshNI	GGYRCC	1 cut(s)	281
BsiEI	CGRYCG	2 cut(s)	96, 165
BsiHKAI	GWGCWC	1 cut(s)	303
BsiHKCI	CYCGRG	1 cut(s)	401
BsiSI	CCGG	2 cut(s)	6, 165
BslI	CCNNNNNNNGG	3 cut(s)	25, 182, 490
BsmI	GAATGC	1 cut(s)	343
BsnI	GGCC	5 cut(s)	5, 29, 63, 95, 164
BsoBI	CYCGRG	1 cut(s)	401
Bsp1286I	GDGCHC	2 cut(s)	284, 303
Bsp143I	GATC	4 cut(s)	89, 171, 208, 499
Bsp1720I	GCTNAGC	2 cut(s)	105, 648
BspANI	GGCC	5 cut(s)	5, 29, 63, 95, 164
BspCNI	CTCAG	5 cut(s)	24, 118, 463, 576, 640
BspFNI	CGCG	4 cut(s)	35, 76, 101, 661
BspLI	GGNNCC	2 cut(s)	173, 283
BspMAI	CTGCAG	1 cut(s)	621
BspMI	ACCTGC	1 cut(s)	643
BspPI	GGATC	3 cut(s)	97, 166, 179
BspQI	GCTCTTC	2 cut(s)	129, 319
BspT107I	GGYRCC	1 cut(s)	281
BsrI	ACTGG	2 cut(s)	30, 559
BssECI	CCNNGG	2 cut(s)	99, 176
BssMI	GATC	4 cut(s)	89, 171, 208, 499
Bst2UI	CCWGG	1 cut(s)	296
Bst6I	CTCTTC	2 cut(s)	129, 319
BstDEI	CTNAG	6 cut(s)	11, 105, 471, 569, 584, 648
BstDSI	CCRYGG	2 cut(s)	99, 176
BstF5I	GGATG	2 cut(s)	373, 594
BstFNI	CGCG	4 cut(s)	35, 76, 101, 661
BstH2I	RGCGCY	1 cut(s)	74
BstHHI	GCGC	2 cut(s)	73, 78
BstKTI	GATC	4 cut(s)	92, 174, 211, 502
BstMBI	GATC	4 cut(s)	89, 171, 208, 499
BstMCI	CGRYCG	2 cut(s)	96, 165
BstMWI	GCNNNNNNNGC	5 cut(s)	46, 60, 101, 250, 658
BstNI	CCWGG	1 cut(s)	296
BstSCI	CCNGG	2 cut(s)	164, 294
BstSFI	CTRYAG	2 cut(s)	415, 617
BstSLI	GKGCMC	1 cut(s)	284
BstUI	CGCG	4 cut(s)	35, 76, 101, 661
BstV1I	GCAGC	1 cut(s)	27
BstX2I	RGATCY	1 cut(s)	171
BstYI	RGATCY	1 cut(s)	171
BstZI	CGGCCG	2 cut(s)	93, 162
BsuI	GTATCC	2 cut(s)	180, 404
BsuRI	GGCC	5 cut(s)	5, 29, 63, 95, 164
BtgI	CCRYGG	2 cut(s)	99, 176
BtsCI	GGATG	2 cut(s)	373, 594
BtsIMutI	CAGTG	1 cut(s)	522
BveI	ACCTGC	1 cut(s)	643
CfoI	GCGC	2 cut(s)	73, 78
Cfr42I	CCGCGG	1 cut(s)	102
CseI	GACGC	1 cut(s)	24
Csp6I	GTAC	1 cut(s)	232
CviAII	CATG	1 cut(s)	605
CviQI	GTAC	1 cut(s)	232
DdeI	CTNAG	6 cut(s)	11, 105, 471, 569, 584, 648
DpnI	GATC	4 cut(s)	91, 173, 210, 501
DpnII	GATC	4 cut(s)	89, 171, 208, 499
EaeI	YGGCCR	4 cut(s)	3, 27, 93, 162
EagI	CGGCCG	2 cut(s)	93, 162
Eam1104I	CTCTTC	2 cut(s)	129, 319
EarI	CTCTTC	2 cut(s)	129, 319
EciI	GGCGGA	1 cut(s)	281
Ecl136II	GAGCTC	1 cut(s)	301
EclXI	CGGCCG	2 cut(s)	93, 162
Eco24I	GRGCYC	1 cut(s)	303
Eco52I	CGGCCG	2 cut(s)	93, 162
Eco53kI	GAGCTC	1 cut(s)	301
Eco57I	CTGAAG	1 cut(s)	65
Eco88I	CYCGRG	1 cut(s)	401
EcoICRI	GAGCTC	1 cut(s)	301
EcoRI	GAATTC	1 cut(s)	462
EcoRII	CCWGG	1 cut(s)	294
EcoT22I	ATGCAT	1 cut(s)	606
EcoT38I	GRGCYC	1 cut(s)	303
FaeI	CATG	1 cut(s)	608
FaiI	YATR	4 cut(s)	278, 602, 606, 676
FalI	AAGNNNNNCTT	4 cut(s)	212, 244, 342, 374
FatI	CATG	1 cut(s)	604
Fnu4HI	GCNGC	8 cut(s)	16, 30, 33, 41, 74, 96, 99, 102
FokI	GGATG	2 cut(s)	380, 601
FriOI	GRGCYC	1 cut(s)	303
Fsp4HI	GCNGC	8 cut(s)	16, 30, 33, 41, 74, 96, 99, 102
FspBI	CTAG	3 cut(s)	459, 503, 548
GlaI	GCGC	2 cut(s)	72, 77
GluI	GCNGC	8 cut(s)	16, 30, 33, 41, 74, 96, 99, 102
HaeII	RGCGCY	1 cut(s)	74
HaeIII	GGCC	5 cut(s)	5, 29, 63, 95, 164
HapII	CCGG	2 cut(s)	6, 165
HgaI	GACGC	1 cut(s)	24
HhaI	GCGC	2 cut(s)	73, 78
Hin1II	CATG	1 cut(s)	608
Hin6I	GCGC	2 cut(s)	71, 76
HinP1I	GCGC	2 cut(s)	71, 76
HincII	GTYRAC	1 cut(s)	481
HindII	GTYRAC	1 cut(s)	481
HindIII	AAGCTT	3 cut(s)	251, 356, 559
HinfI	GANTC	5 cut(s)	9, 158, 432, 448, 544
HpaII	CCGG	2 cut(s)	6, 165
HphI	GGTGA	3 cut(s)	355, 434, 547
Hpy166II	GTNNAC	2 cut(s)	157, 481
Hpy188I	TCNGA	2 cut(s)	124, 585
Hpy188III	TCNNGA	5 cut(s)	247, 257, 365, 440, 575
Hpy8I	GTNNAC	2 cut(s)	157, 481
Hpy99I	CGWCG	2 cut(s)	40, 128
HpyAV	CCTTC	2 cut(s)	344, 401
HpyCH4IV	ACGT	1 cut(s)	609
HpyCH4V	TGCA	2 cut(s)	604, 619
HpyF10VI	GCNNNNNNNGC	5 cut(s)	46, 60, 101, 250, 658
HpyF3I	CTNAG	6 cut(s)	11, 105, 471, 569, 584, 648
HpySE526I	ACGT	1 cut(s)	609
Hsp92II	CATG	1 cut(s)	608
HspAI	GCGC	2 cut(s)	71, 76
KspI	CCGCGG	1 cut(s)	102
Kzo9I	GATC	4 cut(s)	89, 171, 208, 499
LguI	GCTCTTC	2 cut(s)	129, 319
LmnI	GCTCC	1 cut(s)	298
Lsp1109I	GCAGC	1 cut(s)	27
LweI	GCATC	1 cut(s)	148
MaeI	CTAG	3 cut(s)	459, 503, 548
MaeII	ACGT	1 cut(s)	609
MaeIII	GTNAC	1 cut(s)	593
MalI	GATC	4 cut(s)	91, 173, 210, 501
MboI	GATC	4 cut(s)	89, 171, 208, 499
MboII	GAAGA	7 cut(s)	143, 146, 232, 306, 550, 553, 635
MflI	RGATCY	1 cut(s)	171
MhlI	GDGCHC	2 cut(s)	284, 303
MluCI	AATT	4 cut(s)	462, 486, 495, 511
MlyI	GAGTC	2 cut(s)	3, 152
MmeI	TCCRAC	1 cut(s)	147
Mph1103I	ATGCAT	1 cut(s)	606
MslI	CAYNNNNRTG	1 cut(s)	275
MspA1I	CMGCKG	2 cut(s)	101, 109
MspI	CCGG	2 cut(s)	6, 165
MspR9I	CCNGG	2 cut(s)	166, 296
MteI	GCGCNGCGC	1 cut(s)	74
Mva1269I	GAATGC	1 cut(s)	343
MvaI	CCWGG	1 cut(s)	296
MvnI	CGCG	4 cut(s)	35, 76, 101, 661
MwoI	GCNNNNNNNGC	5 cut(s)	46, 60, 101, 250, 658
NciI	CCSGG	1 cut(s)	166
NdeII	GATC	4 cut(s)	89, 171, 208, 499
NlaIII	CATG	1 cut(s)	608
NlaIV	GGNNCC	2 cut(s)	173, 283
NmeAIII	GCCGAG	3 cut(s)	104, 140, 262
NsiI	ATGCAT	1 cut(s)	606
PaeR7I	CTCGAG	1 cut(s)	401
PciSI	GCTCTTC	2 cut(s)	129, 319
PctI	GAATGC	1 cut(s)	343
PfeI	GAWTC	3 cut(s)	432, 448, 544
PkrI	GCNGC	8 cut(s)	17, 31, 34, 42, 75, 97, 100, 103
PleI	GAGTC	2 cut(s)	3, 152
PpsI	GAGTC	2 cut(s)	3, 152
Psp124BI	GAGCTC	1 cut(s)	303
Psp6I	CCWGG	1 cut(s)	294
PspGI	CCWGG	1 cut(s)	294
PspN4I	GGNNCC	2 cut(s)	173, 283
PspXI	VCTCGAGB	1 cut(s)	401
PstI	CTGCAG	1 cut(s)	621
PsuI	RGATCY	1 cut(s)	171
PvuII	CAGCTG	1 cut(s)	109
RsaI	GTAC	1 cut(s)	233
RsaNI	GTAC	1 cut(s)	232
RseI	CAYNNNNRTG	1 cut(s)	275
SacI	GAGCTC	1 cut(s)	303
SacII	CCGCGG	1 cut(s)	102
SapI	GCTCTTC	2 cut(s)	129, 319
SatI	GCNGC	8 cut(s)	16, 30, 33, 41, 74, 96, 99, 102
Sau3AI	GATC	4 cut(s)	89, 171, 208, 499
SchI	GAGTC	2 cut(s)	3, 152
ScrFI	CCNGG	2 cut(s)	166, 296
SduI	GDGCHC	2 cut(s)	284, 303
SfaNI	GCATC	1 cut(s)	148
SfcI	CTRYAG	2 cut(s)	415, 617
Sfr274I	CTCGAG	1 cut(s)	401
Sfr303I	CCGCGG	1 cut(s)	102
SgrBI	CCGCGG	1 cut(s)	102
SlaI	CTCGAG	1 cut(s)	401
SmiMI	CAYNNNNRTG	1 cut(s)	275
SmlI	CTYRAG	1 cut(s)	401
SmoI	CTYRAG	1 cut(s)	401
Sse9I	AATT	4 cut(s)	462, 486, 495, 511
SspMI	CTAG	3 cut(s)	459, 503, 548
SstI	GAGCTC	1 cut(s)	303
StyD4I	CCNGG	2 cut(s)	164, 294
TaiI	ACGT	1 cut(s)	612
TaqI	TCGA	6 cut(s)	21, 211, 248, 392, 402, 454
TasI	AATT	4 cut(s)	462, 486, 495, 511
TauI	GCSGC	7 cut(s)	18, 32, 35, 76, 98, 101, 104
TfiI	GAWTC	3 cut(s)	432, 448, 544
TscAI	CASTG	1 cut(s)	529
TseI	GCWGC	1 cut(s)	40
TspDTI	ATGAA	3 cut(s)	363, 384, 424
TspGWI	ACGGA	2 cut(s)	102, 193
TspRI	CASTG	1 cut(s)	529
XapI	RAATTY	2 cut(s)	462, 511
XcmI	CCANNNNNNNNNTGG	1 cut(s)	529
XhoI	CTCGAG	1 cut(s)	401
XspI	CTAG	3 cut(s)	459, 503, 548
Zsp2I	ATGCAT	1 cut(s)	606

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.