Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0020514.1

Orthogroup ID

OG0001981

Physical Location & Seq

Genomic Coordinates Reverse (-)

19478 .. 20285

Gene Structure 808 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0020514.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 456 bp

atgaataatctcacagggataatccctgaaaagattgggaacttgaaatcgataggaacgatcttgatctttctgcgaacaaactttgggtttcattccacagatacggtttctttgacattcgtgactcatctaaaccctaaacacaacaacttgtccgggaaaatcccaacaagcaaccagttcaacagcctaatggatccatcaatttatcaaggcaatgctggtctttgtggcaatccgttacaaactctttgccgagataatgaagaaacacctcaggttccaagtgaagatggagaaggagatgatggtaaatctgaacaggtatggtttggaggtgcgaagaagcacgtgtacgccgagaggctctcgaagcttctggaagttccccacattttcaccctcgtccgccaggagctcaaccctcgctcttctctgtacaagcaggtctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001704 GO:0001706 GO:0003006 GO:0005575 GO:0005618 GO:0005623 GO:0005886 GO:0006810 GO:0006833 GO:0006950 GO:0007275 GO:0007369 GO:0007389 GO:0007492 GO:0008104 GO:0008150 GO:0009505 GO:0009531 GO:0009611 GO:0009653 GO:0009790 GO:0009791 GO:0009793 GO:0009798 GO:0009888 GO:0009987 GO:0010154 GO:0010453 GO:0010470 GO:0016020 GO:0022414 GO:0022603 GO:0030104 GO:0030154 GO:0030312 GO:0032501 GO:0032502 GO:0033036 GO:0035987 GO:0042044 GO:0042592 GO:0042659 GO:0044426 GO:0044462 GO:0044464 GO:0045184 GO:0045595 GO:0045995 GO:0048226 GO:0048316 GO:0048598 GO:0048608 GO:0048646 GO:0048731 GO:0048856 GO:0048869 GO:0048878 GO:0050789 GO:0050793 GO:0050794 GO:0050801 GO:0050896 GO:0051179 GO:0051234 GO:0051239 GO:0051302 GO:0055065 GO:0055067 GO:0055075 GO:0055080 GO:0061458 GO:0065001 GO:0065007 GO:0065008 GO:0071944 GO:0090558 GO:0090708 GO:0098771 GO:0099402 GO:1903224 GO:1905392 GO:1905421 GO:2000026 GO:2000067 GO:2000280

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_6 LRR_8

Protein Analysis

151

Amino Acids

16.77

Weight (kDa)

6.5

Isoelectric Point (pI)

29.61

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001981)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G01820
fragaria_vesca	FvH4_6g53130
malus_domestica	MD06G1144200.v1.1 MD09G1013900.v1.1 MD09G1014300.v1.1 MD17G1014400.v1.1
prunus_persica	Prupe.3G303400_v2.0.a1
pyrus_communis	pycom06g13370 pycom07g09870
rosa_chinensis	RchiOBHm_Chr2g0175001 RchiOBHm_Chr7g0190491
rosa_laevigata	RLG00000004522 RLG00000010233 RLG00000022307 RLG00000022322
rosa_multiflora	Rmu_co7982852.1_g000001 Rmu_sc0001716.1_g000035 Rmu_sc0003920.1_g000002 Rmu_sc0010642.1_g000002 Rmu_sc0010806.1_g000001 Rmu_sc0014601.1_g000013 Rmu_sc0020514.1_g000002
rosa_roxburghii	Rroxscaffold_2G00077590 Rroxscaffold_3G00264550 Rroxscaffold_7G00211240
rosa_rugosa	Rorug02G0581000 Rorug05G0549400 Rorug06G0504900 Rorug06G0505000 Rorug06G0505000
rosa_samantha	Rh2AG661800 Rh2BG673100 Rh2CG416400 Rh2CG636200 Rh2DG686700 Rh6AG066000 Rh6BG058800 Rh6BG059000 Rh6BG059100 Rh7AG111000 Rh7BG113900 Rh7CG116000 Rh7DG114800
rosa_wichuraiana	Rw2G054250 Rw7G009690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	439
AciI	CCGC	1 cut(s)	412
AclWI	GGATC	2 cut(s)	194, 207
AcvI	CACGTG	1 cut(s)	355
AfaI	GTAC	2 cut(s)	359, 443
AflIII	ACRYGT	1 cut(s)	354
AgsI	TTSAA	2 cut(s)	46, 187
AjnI	CCWGG	1 cut(s)	414
AluBI	AGCT	2 cut(s)	379, 421
AluI	AGCT	2 cut(s)	379, 421
Alw21I	GWGCWC	1 cut(s)	423
AlwI	GGATC	2 cut(s)	194, 207
AsuC2I	CCSGG	1 cut(s)	160
AsuHPI	GGTGA	1 cut(s)	394
AxyI	CCTNAGG	1 cut(s)	279
BamHI	GGATCC	1 cut(s)	199
BanII	GRGCYC	1 cut(s)	423
BarI	GAAGNNNNNNTAC	2 cut(s)	341, 373
BbrPI	CACGTG	1 cut(s)	355
Bbv12I	GWGCWC	1 cut(s)	423
BccI	CCATC	3 cut(s)	211, 290, 305
BciT130I	CCWGG	1 cut(s)	416
BcnI	CCSGG	1 cut(s)	160
BfuAI	ACCTGC	1 cut(s)	439
Bme1390I	CCNGG	2 cut(s)	160, 416
BmiI	GGNNCC	2 cut(s)	201, 285
BmrFI	CCNGG	2 cut(s)	160, 416
BplI	GAGNNNNNCTC	2 cut(s)	356, 388
BpuMI	CCSGG	1 cut(s)	160
Bsa29I	ATCGAT	1 cut(s)	50
BsaAI	YACGTR	1 cut(s)	355
BsaBI	GATNNNNATC	1 cut(s)	65
Bse1I	ACTGG	1 cut(s)	181
Bse21I	CCTNAGG	1 cut(s)	279
Bse3DI	GCAATG	1 cut(s)	226
Bse8I	GATNNNNATC	1 cut(s)	65
BseBI	CCWGG	1 cut(s)	416
BseCI	ATCGAT	1 cut(s)	50
BseJI	GATNNNNATC	1 cut(s)	65
BseMI	GCAATG	1 cut(s)	226
BseMII	CTCAG	1 cut(s)	293
BseNI	ACTGG	1 cut(s)	181
BshVI	ATCGAT	1 cut(s)	50
BsiHKAI	GWGCWC	1 cut(s)	423
BsiSI	CCGG	1 cut(s)	159
Bsp1286I	GDGCHC	1 cut(s)	423
Bsp1407I	TGTACA	1 cut(s)	441
Bsp143I	GATC	3 cut(s)	60, 66, 199
BspACI	CCGC	1 cut(s)	412
BspCNI	CTCAG	1 cut(s)	292
BspDI	ATCGAT	1 cut(s)	50
BspLI	GGNNCC	2 cut(s)	201, 285
BspMI	ACCTGC	1 cut(s)	439
BspPI	GGATC	2 cut(s)	194, 207
BspQI	GCTCTTC	1 cut(s)	439
BsrDI	GCAATG	1 cut(s)	226
BsrGI	TGTACA	1 cut(s)	441
BsrI	ACTGG	1 cut(s)	181
BssMI	GATC	3 cut(s)	60, 66, 199
Bst2UI	CCWGG	1 cut(s)	416
Bst4CI	ACNGT	1 cut(s)	109
Bst6I	CTCTTC	1 cut(s)	439
BstAUI	TGTACA	1 cut(s)	441
BstBAI	YACGTR	1 cut(s)	355
BstDEI	CTNAG	1 cut(s)	279
BstKTI	GATC	3 cut(s)	63, 69, 202
BstMBI	GATC	3 cut(s)	60, 66, 199
BstMWI	GCNNNNNNNGC	1 cut(s)	376
BstNI	CCWGG	1 cut(s)	416
BstSCI	CCNGG	2 cut(s)	158, 414
BstX2I	RGATCY	1 cut(s)	199
BstYI	RGATCY	1 cut(s)	199
Bsu15I	ATCGAT	1 cut(s)	50
Bsu36I	CCTNAGG	1 cut(s)	279
BsuTUI	ATCGAT	1 cut(s)	50
BveI	ACCTGC	1 cut(s)	439
ClaI	ATCGAT	1 cut(s)	50
Csp6I	GTAC	2 cut(s)	358, 442
CviJI	RGCY	4 cut(s)	192, 370, 379, 421
CviKI_1	RGCY	4 cut(s)	192, 370, 379, 421
CviQI	GTAC	2 cut(s)	358, 442
DdeI	CTNAG	1 cut(s)	279
DpnI	GATC	3 cut(s)	62, 68, 201
DpnII	GATC	3 cut(s)	60, 66, 199
Eam1104I	CTCTTC	1 cut(s)	439
EarI	CTCTTC	1 cut(s)	439
EciI	GGCGGA	1 cut(s)	401
Ecl136II	GAGCTC	1 cut(s)	421
Eco24I	GRGCYC	1 cut(s)	423
Eco53kI	GAGCTC	1 cut(s)	421
Eco72I	CACGTG	1 cut(s)	355
Eco81I	CCTNAGG	1 cut(s)	279
EcoICRI	GAGCTC	1 cut(s)	421
EcoRII	CCWGG	1 cut(s)	414
EcoT38I	GRGCYC	1 cut(s)	423
FaiI	YATR	1 cut(s)	331
FriOI	GRGCYC	1 cut(s)	423
HapII	CCGG	1 cut(s)	159
HindIII	AAGCTT	1 cut(s)	377
HinfI	GANTC	1 cut(s)	127
HpaII	CCGG	1 cut(s)	159
HphI	GGTGA	1 cut(s)	394
Hpy166II	GTNNAC	1 cut(s)	358
Hpy188I	TCNGA	2 cut(s)	322, 455
Hpy188III	TCNNGA	4 cut(s)	64, 124, 373, 383
Hpy8I	GTNNAC	1 cut(s)	358
HpyAV	CCTTC	1 cut(s)	296
HpyCH4III	ACNGT	1 cut(s)	109
HpyCH4IV	ACGT	1 cut(s)	354
HpyF10VI	GCNNNNNNNGC	1 cut(s)	376
HpyF3I	CTNAG	1 cut(s)	279
HpySE526I	ACGT	1 cut(s)	354
Kzo9I	GATC	3 cut(s)	60, 66, 199
LguI	GCTCTTC	1 cut(s)	439
LmnI	GCTCC	1 cut(s)	418
MaeII	ACGT	1 cut(s)	354
MaeIII	GTNAC	2 cut(s)	124, 243
MalI	GATC	3 cut(s)	62, 68, 201
MboI	GATC	3 cut(s)	60, 66, 199
MboII	GAAGA	4 cut(s)	281, 305, 358, 426
MflI	RGATCY	1 cut(s)	199
MhlI	GDGCHC	1 cut(s)	423
MluCI	AATT	1 cut(s)	207
MlyI	GAGTC	1 cut(s)	121
MnlI	CCTC	5 cut(s)	288, 332, 360, 416, 438
MspI	CCGG	1 cut(s)	159
MspR9I	CCNGG	2 cut(s)	160, 416
MvaI	CCWGG	1 cut(s)	416
MwoI	GCNNNNNNNGC	1 cut(s)	376
NciI	CCSGG	1 cut(s)	160
NdeII	GATC	3 cut(s)	60, 66, 199
NlaIV	GGNNCC	2 cut(s)	201, 285
NmeAIII	GCCGAG	2 cut(s)	284, 388
NmuCI	GTSAC	1 cut(s)	124
PciSI	GCTCTTC	1 cut(s)	439
PcsI	WCGNNNNNNNCGW	2 cut(s)	56, 360
PfoI	TCCNGGA	1 cut(s)	158
PleI	GAGTC	1 cut(s)	121
PmaCI	CACGTG	1 cut(s)	355
PmlI	CACGTG	1 cut(s)	355
PpsI	GAGTC	1 cut(s)	121
Ppu21I	YACGTR	1 cut(s)	355
Psp124BI	GAGCTC	1 cut(s)	423
Psp6I	CCWGG	1 cut(s)	414
PspCI	CACGTG	1 cut(s)	355
PspGI	CCWGG	1 cut(s)	414
PspN4I	GGNNCC	2 cut(s)	201, 285
PsuI	RGATCY	1 cut(s)	199
RsaI	GTAC	2 cut(s)	359, 443
RsaNI	GTAC	2 cut(s)	358, 442
SacI	GAGCTC	1 cut(s)	423
SapI	GCTCTTC	1 cut(s)	439
Sau3AI	GATC	3 cut(s)	60, 66, 199
SchI	GAGTC	1 cut(s)	121
ScrFI	CCNGG	2 cut(s)	160, 416
SduI	GDGCHC	1 cut(s)	423
SetI	ASST	8 cut(s)	280, 285, 330, 343, 357, 381, 423, 453
Sse9I	AATT	1 cut(s)	207
SsiI	CCGC	1 cut(s)	412
SstI	GAGCTC	1 cut(s)	423
StyD4I	CCNGG	2 cut(s)	158, 414
TaaI	ACNGT	1 cut(s)	109
TaiI	ACGT	1 cut(s)	357
TaqI	TCGA	2 cut(s)	50, 374
TasI	AATT	1 cut(s)	207
TatI	WGTACW	1 cut(s)	441
TseFI	GTSAC	1 cut(s)	124
Tsp45I	GTSAC	1 cut(s)	124
TspDTI	ATGAA	3 cut(s)	17, 83, 282
TspGWI	ACGGA	1 cut(s)	231

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.