Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0001981

Physical Location & Seq

Genomic Coordinates Reverse (-)

58154197 .. 58156314

Gene Structure 2118 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00264550.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 756 bp

ATGATCAAACTACGCCCTTTAATTTCCCCTGCCGCCGTAACCGCCGCGCCGCCTCTACTCCGTCTTCTCCGGCTCACCCTGAGCCGACTCTCCTCCTCCTCCTCCTCCGCCGCCGCCGCGGCTCAGCCGATTCTCGATTACGACTACTACCAGCTCGACCACGCGCCGCCACGCGATCAAGCTCCTTTGGCCGACGCGGCGGGCTCGGTTCCCGTGAGGGGAGTGCAGTGGGCGTTCATAGGGAGCCCAATCGCCAAGAGGCACGTCTACGCCGAGAGAATCTCCAAGCTTCTTCAAGTTCCTCACATTTCCATGGCCACCCTCGTCCGTCAAGACCTTCACCCTCACTCCTCTCTCTACAACCAGATTGCGAATGCCGTGAATCGGGGGGAGATTGTGGCAGAGGAGGATATACTATTAGGGTTGTTGTCAAAGAGATTGGAAGATGGATATTGGAGGGGAGAGAGTGGATTTATACTGGATGGAATTCCTCGTTCCAAGATCCAAGCTGAAATTCTTTCACAACTGGTTGAGATTGATCTAGTGGTGAATTTCAAATGCACAGAACATTGCTTGGTGAAACACAAAAGAGAAGCTGCCTGGAGGGAGAAACTCCAAATCTTTGCCGAGCAGAGTAGGCCACTAGAAGATTACTACAAGAAACAGGAAAAGATTCTTGACTTTCAAGTCAGTAGTGCACCTGGGGAGACTTGGAAAGGGCTCTTGGCTACTCTGCATCTACACTCTTCACTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00230 ko00730 ko01100 ko01110 ko01130 map00230 map00730 map01100 map01110 map01130

Pfam Domains

Protein Families

ADK

Protein Analysis

251

Amino Acids

28.0

Weight (kDa)

8.47

Isoelectric Point (pI)

56.82

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ADK	PF00406	80 - 223	5.9e-20	Adenylate kinase
AAA_17	PF13207	91 - 194	6.4e-06	AAA domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001981)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G01820
fragaria_vesca	FvH4_6g53130
malus_domestica	MD06G1144200.v1.1 MD09G1013900.v1.1 MD09G1014300.v1.1 MD17G1014400.v1.1
prunus_persica	Prupe.3G303400_v2.0.a1
pyrus_communis	pycom06g13370 pycom07g09870
rosa_chinensis	RchiOBHm_Chr2g0175001 RchiOBHm_Chr7g0190491
rosa_laevigata	RLG00000004522 RLG00000010233 RLG00000022307 RLG00000022322
rosa_multiflora	Rmu_co7982852.1_g000001 Rmu_sc0001716.1_g000035 Rmu_sc0003920.1_g000002 Rmu_sc0010642.1_g000002 Rmu_sc0010806.1_g000001 Rmu_sc0014601.1_g000013 Rmu_sc0020514.1_g000002
rosa_roxburghii	Rroxscaffold_2G00077590 Rroxscaffold_3G00264550 Rroxscaffold_7G00211240
rosa_rugosa	Rorug02G0581000 Rorug05G0549400 Rorug06G0504900 Rorug06G0505000 Rorug06G0505000
rosa_samantha	Rh2AG661800 Rh2BG673100 Rh2CG416400 Rh2CG636200 Rh2DG686700 Rh6AG066000 Rh6BG058800 Rh6BG059000 Rh6BG059100 Rh7AG111000 Rh7BG113900 Rh7CG116000 Rh7DG114800
rosa_wichuraiana	Rw2G054250 Rw7G009690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	686
AccI	GTMKAC	1 cut(s)	267
AccII	CGCG	5 cut(s)	47, 119, 164, 174, 197
AclWI	GGATC	1 cut(s)	496
AcoI	YGGCCR	2 cut(s)	189, 315
AcsI	RAATTY	3 cut(s)	486, 513, 550
AfiI	CCNNNNNNNGG	2 cut(s)	218, 384
AgsI	TTSAA	3 cut(s)	296, 556, 686
AjiI	CACGTC	1 cut(s)	265
AjnI	CCWGG	2 cut(s)	599, 700
AjuI	GAANNNNNNNTTGG	4 cut(s)	498, 530, 707, 739
AluBI	AGCT	5 cut(s)	154, 182, 289, 509, 596
AluI	AGCT	5 cut(s)	154, 182, 289, 509, 596
Alw21I	GWGCWC	1 cut(s)	700
Alw26I	GTCTC	1 cut(s)	701
Alw44I	GTGCAC	1 cut(s)	696
AlwI	GGATC	1 cut(s)	496
AoxI	GGCC	3 cut(s)	189, 315, 638
ApaLI	GTGCAC	1 cut(s)	696
ApeKI	GCWGC	1 cut(s)	596
ApoI	RAATTY	3 cut(s)	486, 513, 550
Asp700I	GAANNNNTTC	1 cut(s)	672
AspLEI	GCGC	2 cut(s)	49, 166
AsuHPI	GGTGA	4 cut(s)	67, 332, 559, 589
BaeGI	GKGCMC	1 cut(s)	700
BalI	TGGCCA	1 cut(s)	317
BanII	GRGCYC	3 cut(s)	206, 248, 723
BbsI	GAAGAC	1 cut(s)	56
Bbv12I	GWGCWC	1 cut(s)	700
BbvI	GCAGC	1 cut(s)	583
BccI	CCATC	2 cut(s)	440, 476
BceAI	ACGGC	2 cut(s)	20, 362
BciT130I	CCWGG	2 cut(s)	601, 702
BclI	TGATCA	1 cut(s)	3
BcoDI	GTCTC	1 cut(s)	701
BfaI	CTAG	2 cut(s)	542, 644
BfmI	CTRYAG	1 cut(s)	752
BglI	GCCNNNNNGGC	2 cut(s)	119, 197
BlpI	GCTNAGC	1 cut(s)	123
Bme1390I	CCNGG	2 cut(s)	601, 702
BmgBI	CACGTC	1 cut(s)	265
BmiI	GGNNCC	2 cut(s)	210, 245
BmrFI	CCNGG	2 cut(s)	601, 702
BmsI	GCATC	1 cut(s)	745
BpiI	GAAGAC	1 cut(s)	56
BplI	GAGNNNNNCTC	2 cut(s)	266, 298
BpmI	CTGGAG	1 cut(s)	622
Bpu10I	CCTNAGC	1 cut(s)	80
Bpu1102I	GCTNAGC	1 cut(s)	123
BsaJI	CCNNGG	3 cut(s)	117, 312, 701
BsaXI	ACNNNNNCTCC	2 cut(s)	332, 362
Bsc4I	CCNNNNNNNGG	2 cut(s)	218, 384
Bse1I	ACTGG	2 cut(s)	483, 531
Bse3DI	GCAATG	1 cut(s)	568
BseBI	CCWGG	2 cut(s)	601, 702
BseDI	CCNNGG	3 cut(s)	117, 312, 701
BseGI	GGATG	1 cut(s)	487
BseLI	CCNNNNNNNGG	2 cut(s)	218, 384
BseMI	GCAATG	1 cut(s)	568
BseMII	CTCAG	2 cut(s)	71, 137
BseNI	ACTGG	2 cut(s)	483, 531
BseRI	GAGGAG	7 cut(s)	82, 85, 88, 91, 94, 340, 419
BseSI	GKGCMC	1 cut(s)	700
BseXI	GCAGC	1 cut(s)	583
BsgI	GTGCAG	1 cut(s)	245
Bsh1236I	CGCG	5 cut(s)	47, 119, 164, 174, 197
BshFI	GGCC	3 cut(s)	191, 317, 640
BsiHKAI	GWGCWC	1 cut(s)	700
BsiSI	CCGG	1 cut(s)	70
BslI	CCNNNNNNNGG	2 cut(s)	218, 384
BsmAI	GTCTC	1 cut(s)	701
BsmI	GAATGC	1 cut(s)	379
BsnI	GGCC	3 cut(s)	191, 317, 640
Bsp1286I	GDGCHC	4 cut(s)	206, 248, 700, 723
Bsp143I	GATC	4 cut(s)	3, 175, 501, 538
Bsp1720I	GCTNAGC	1 cut(s)	123
Bsp19I	CCATGG	1 cut(s)	312
BspANI	GGCC	3 cut(s)	191, 317, 640
BspCNI	CTCAG	2 cut(s)	72, 136
BspFNI	CGCG	5 cut(s)	47, 119, 164, 174, 197
BspLI	GGNNCC	2 cut(s)	210, 245
BspPI	GGATC	1 cut(s)	496
BsrDI	GCAATG	1 cut(s)	568
BsrI	ACTGG	2 cut(s)	483, 531
BssECI	CCNNGG	3 cut(s)	117, 312, 701
BssMI	GATC	4 cut(s)	3, 175, 501, 538
BssT1I	CCWWGG	1 cut(s)	312
Bst2UI	CCWGG	2 cut(s)	601, 702
Bst4CI	ACNGT	1 cut(s)	753
Bst6I	CTCTTC	1 cut(s)	751
BstC8I	GCNNGC	1 cut(s)	202
BstDEI	CTNAG	2 cut(s)	80, 123
BstDSI	CCRYGG	2 cut(s)	117, 312
BstF5I	GGATG	1 cut(s)	487
BstFNI	CGCG	5 cut(s)	47, 119, 164, 174, 197
BstHHI	GCGC	2 cut(s)	49, 166
BstKTI	GATC	4 cut(s)	6, 178, 504, 541
BstMAI	GTCTC	1 cut(s)	701
BstMBI	GATC	4 cut(s)	3, 175, 501, 538
BstMWI	GCNNNNNNNGC	6 cut(s)	41, 116, 119, 188, 197, 637
BstNI	CCWGG	2 cut(s)	601, 702
BstSCI	CCNGG	2 cut(s)	599, 700
BstSFI	CTRYAG	1 cut(s)	752
BstSLI	GKGCMC	1 cut(s)	700
BstUI	CGCG	5 cut(s)	47, 119, 164, 174, 197
BstV1I	GCAGC	1 cut(s)	583
BstV2I	GAAGAC	1 cut(s)	56
BstX2I	RGATCY	1 cut(s)	501
BstYI	RGATCY	1 cut(s)	501
BsuRI	GGCC	3 cut(s)	191, 317, 640
BtgI	CCRYGG	2 cut(s)	117, 312
BtrI	CACGTC	1 cut(s)	265
BtsCI	GGATG	1 cut(s)	487
BtsI	GCAGTG	1 cut(s)	233
BtsIMutI	CAGTG	2 cut(s)	233, 749
Cac8I	GCNNGC	1 cut(s)	202
CfoI	GCGC	2 cut(s)	49, 166
Cfr42I	CCGCGG	1 cut(s)	120
CseI	GACGC	1 cut(s)	203
CviAII	CATG	1 cut(s)	313
DdeI	CTNAG	2 cut(s)	80, 123
DpnI	GATC	4 cut(s)	5, 177, 503, 540
DpnII	GATC	4 cut(s)	3, 175, 501, 538
DrdI	GACNNNNNNGTC	1 cut(s)	686
DseDI	GACNNNNNNGTC	1 cut(s)	686
EaeI	YGGCCR	2 cut(s)	189, 315
Eam1104I	CTCTTC	1 cut(s)	751
EarI	CTCTTC	1 cut(s)	751
EciI	GGCGGA	1 cut(s)	97
Eco130I	CCWWGG	1 cut(s)	312
Eco24I	GRGCYC	3 cut(s)	206, 248, 723
EcoRI	GAATTC	1 cut(s)	486
EcoRII	CCWGG	2 cut(s)	599, 700
EcoT14I	CCWWGG	1 cut(s)	312
EcoT38I	GRGCYC	3 cut(s)	206, 248, 723
ErhI	CCWWGG	1 cut(s)	312
FaeI	CATG	1 cut(s)	316
FaiI	YATR	4 cut(s)	239, 314, 413, 476
FatI	CATG	1 cut(s)	312
FauI	CCCGC	1 cut(s)	193
FbaI	TGATCA	1 cut(s)	3
FblI	GTMKAC	1 cut(s)	267
FokI	GGATG	1 cut(s)	494
FriOI	GRGCYC	3 cut(s)	206, 248, 723
FspBI	CTAG	2 cut(s)	542, 644
GlaI	GCGC	2 cut(s)	48, 165
GsuI	CTGGAG	1 cut(s)	622
HaeIII	GGCC	3 cut(s)	191, 317, 640
HapII	CCGG	1 cut(s)	70
HgaI	GACGC	1 cut(s)	203
HhaI	GCGC	2 cut(s)	49, 166
Hin1II	CATG	1 cut(s)	316
Hin6I	GCGC	2 cut(s)	47, 164
HinP1I	GCGC	2 cut(s)	47, 164
HindIII	AAGCTT	1 cut(s)	287
HinfI	GANTC	5 cut(s)	87, 130, 279, 382, 673
HpaII	CCGG	1 cut(s)	70
HphI	GGTGA	4 cut(s)	67, 332, 559, 589
Hpy166II	GTNNAC	2 cut(s)	268, 698
Hpy188III	TCNNGA	3 cut(s)	134, 332, 677
Hpy8I	GTNNAC	2 cut(s)	268, 698
Hpy99I	CGWCG	1 cut(s)	197
HpyAV	CCTTC	1 cut(s)	347
HpyCH4III	ACNGT	1 cut(s)	753
HpyCH4IV	ACGT	1 cut(s)	264
HpyCH4V	TGCA	4 cut(s)	226, 561, 698, 736
HpyF10VI	GCNNNNNNNGC	6 cut(s)	41, 116, 119, 188, 197, 637
HpyF3I	CTNAG	2 cut(s)	80, 123
HpySE526I	ACGT	1 cut(s)	264
Hsp92II	CATG	1 cut(s)	316
HspAI	GCGC	2 cut(s)	47, 164
Ksp22I	TGATCA	1 cut(s)	3
KspI	CCGCGG	1 cut(s)	120
Kzo9I	GATC	4 cut(s)	3, 175, 501, 538
LmnI	GCTCC	2 cut(s)	187, 243
Lsp1109I	GCAGC	1 cut(s)	583
LweI	GCATC	1 cut(s)	745
MaeI	CTAG	2 cut(s)	542, 644
MaeII	ACGT	1 cut(s)	264
MaeIII	GTNAC	1 cut(s)	37
MalI	GATC	4 cut(s)	5, 177, 503, 540
MboI	GATC	4 cut(s)	3, 175, 501, 538
MboII	GAAGA	5 cut(s)	56, 284, 455, 659, 738
MflI	RGATCY	1 cut(s)	501
MhlI	GDGCHC	4 cut(s)	206, 248, 700, 723
MlsI	TGGCCA	1 cut(s)	317
MluCI	AATT	4 cut(s)	21, 486, 513, 550
MluNI	TGGCCA	1 cut(s)	317
MlyI	GAGTC	1 cut(s)	81
Mox20I	TGGCCA	1 cut(s)	317
MroXI	GAANNNNTTC	1 cut(s)	672
MscI	TGGCCA	1 cut(s)	317
MseI	TTAA	1 cut(s)	20
MslI	CAYNNNNRTG	1 cut(s)	311
Msp20I	TGGCCA	1 cut(s)	317
MspA1I	CMGCKG	1 cut(s)	119
MspI	CCGG	1 cut(s)	70
MspR9I	CCNGG	2 cut(s)	601, 702
Mva1269I	GAATGC	1 cut(s)	379
MvaI	CCWGG	2 cut(s)	601, 702
MvnI	CGCG	5 cut(s)	47, 119, 164, 174, 197
MwoI	GCNNNNNNNGC	6 cut(s)	41, 116, 119, 188, 197, 637
NcoI	CCATGG	1 cut(s)	312
NdeII	GATC	4 cut(s)	3, 175, 501, 538
NlaIII	CATG	1 cut(s)	316
NlaIV	GGNNCC	2 cut(s)	210, 245
NmeAIII	GCCGAG	2 cut(s)	298, 652
PcsI	WCGNNNNNNNCGW	1 cut(s)	270
PctI	GAATGC	1 cut(s)	379
PdmI	GAANNNNTTC	1 cut(s)	672
PfeI	GAWTC	4 cut(s)	130, 279, 382, 673
PleI	GAGTC	1 cut(s)	81
PpsI	GAGTC	1 cut(s)	81
Psp6I	CCWGG	2 cut(s)	599, 700
PspGI	CCWGG	2 cut(s)	599, 700
PspN4I	GGNNCC	2 cut(s)	210, 245
PsuI	RGATCY	1 cut(s)	501
RseI	CAYNNNNRTG	1 cut(s)	311
SacII	CCGCGG	1 cut(s)	120
SaqAI	TTAA	1 cut(s)	20
Sau3AI	GATC	4 cut(s)	3, 175, 501, 538
SchI	GAGTC	1 cut(s)	81
ScrFI	CCNGG	2 cut(s)	601, 702
SduI	GDGCHC	4 cut(s)	206, 248, 700, 723
SetI	ASST	8 cut(s)	156, 184, 267, 291, 339, 511, 598, 703
SfaNI	GCATC	1 cut(s)	745
SfcI	CTRYAG	1 cut(s)	752
Sfr303I	CCGCGG	1 cut(s)	120
SgrBI	CCGCGG	1 cut(s)	120
SmiMI	CAYNNNNRTG	1 cut(s)	311
Sse9I	AATT	4 cut(s)	21, 486, 513, 550
SspMI	CTAG	2 cut(s)	542, 644
StyD4I	CCNGG	2 cut(s)	599, 700
StyI	CCWWGG	1 cut(s)	312
TaaI	ACNGT	1 cut(s)	753
TaiI	ACGT	1 cut(s)	267
TaqI	TCGA	2 cut(s)	135, 156
TasI	AATT	4 cut(s)	21, 486, 513, 550
TauI	GCSGC	9 cut(s)	35, 47, 52, 113, 116, 119, 122, 169, 200
TfiI	GAWTC	4 cut(s)	130, 279, 382, 673
Tru1I	TTAA	1 cut(s)	20
Tru9I	TTAA	1 cut(s)	20
TscAI	CASTG	2 cut(s)	233, 756
TseI	GCWGC	1 cut(s)	596
TspDTI	ATGAA	1 cut(s)	226
TspGWI	ACGGA	2 cut(s)	50, 317
TspRI	CASTG	2 cut(s)	233, 756
VneI	GTGCAC	1 cut(s)	696
XapI	RAATTY	3 cut(s)	486, 513, 550
XmiI	GTMKAC	1 cut(s)	267
XmnI	GAANNNNTTC	1 cut(s)	672
XspI	CTAG	2 cut(s)	542, 644

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.