Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0001981

Physical Location & Seq

Genomic Coordinates Forward (+)

9388872 .. 9389841

Gene Structure 970 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG059100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 201 bp

ATGGATTCATTCTTGATGGGATTCCTCAAACTAGAATTCAAGCTATCGAGCAAGTTGTTGGAGGATTACTACAGAAAACAGAACAAACTCATCGATTTTCATGTGAAAGGTGCCCCCGGAGAAACCTGGAAGGGGCTGCTGGCTGCATTGCATCTCCAGCATATAAATGCTGTCAGTTCTTTCCAGAAGCTAACTGCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00230 ko00730 ko01100 ko01110 ko01130 map00230 map00730 map01100 map01110 map01130

Pfam Domains

Protein Families

ADK

Protein Analysis

66

Amino Acids

7.57

Weight (kDa)

9.4

Isoelectric Point (pI)

23.66

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001981)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G01820
fragaria_vesca	FvH4_6g53130
malus_domestica	MD06G1144200.v1.1 MD09G1013900.v1.1 MD09G1014300.v1.1 MD17G1014400.v1.1
prunus_persica	Prupe.3G303400_v2.0.a1
pyrus_communis	pycom06g13370 pycom07g09870
rosa_chinensis	RchiOBHm_Chr2g0175001 RchiOBHm_Chr7g0190491
rosa_laevigata	RLG00000004522 RLG00000010233 RLG00000022307 RLG00000022322
rosa_multiflora	Rmu_co7982852.1_g000001 Rmu_sc0001716.1_g000035 Rmu_sc0003920.1_g000002 Rmu_sc0010642.1_g000002 Rmu_sc0010806.1_g000001 Rmu_sc0014601.1_g000013 Rmu_sc0020514.1_g000002
rosa_roxburghii	Rroxscaffold_2G00077590 Rroxscaffold_3G00264550 Rroxscaffold_7G00211240
rosa_rugosa	Rorug02G0581000 Rorug05G0549400 Rorug06G0504900 Rorug06G0505000 Rorug06G0505000
rosa_samantha	Rh2AG661800 Rh2BG673100 Rh2CG416400 Rh2CG636200 Rh2DG686700 Rh6AG066000 Rh6BG058800 Rh6BG059000 Rh6BG059100 Rh7AG111000 Rh7BG113900 Rh7CG116000 Rh7DG114800
rosa_wichuraiana	Rw2G054250 Rw7G009690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	110
AcsI	RAATTY	1 cut(s)	35
AfiI	CCNNNNNNNGG	1 cut(s)	132
AgsI	TTSAA	1 cut(s)	40
AjnI	CCWGG	1 cut(s)	125
AluBI	AGCT	2 cut(s)	43, 190
AluI	AGCT	2 cut(s)	43, 190
ApeKI	GCWGC	2 cut(s)	136, 143
ApoI	RAATTY	1 cut(s)	35
AsuC2I	CCSGG	1 cut(s)	117
BaeGI	GKGCMC	1 cut(s)	115
BanI	GGYRCC	1 cut(s)	110
BbvI	GCAGC	2 cut(s)	123, 130
BccI	CCATC	1 cut(s)	10
BciT130I	CCWGG	1 cut(s)	127
BcnI	CCSGG	1 cut(s)	117
BfaI	CTAG	1 cut(s)	32
BfmI	CTRYAG	1 cut(s)	70
BisI	GCNGC	2 cut(s)	137, 144
BlsI	GCNGC	2 cut(s)	138, 145
Bme1390I	CCNGG	2 cut(s)	117, 127
BmiI	GGNNCC	1 cut(s)	112
BmrFI	CCNGG	2 cut(s)	117, 127
BmsI	GCATC	1 cut(s)	160
BpmI	CTGGAG	1 cut(s)	140
BpuMI	CCSGG	1 cut(s)	117
Bsa29I	ATCGAT	1 cut(s)	93
BsaJI	CCNNGG	1 cut(s)	115
Bsc4I	CCNNNNNNNGG	1 cut(s)	132
Bse3DI	GCAATG	1 cut(s)	146
BseBI	CCWGG	1 cut(s)	127
BseCI	ATCGAT	1 cut(s)	93
BseDI	CCNNGG	1 cut(s)	115
BseLI	CCNNNNNNNGG	1 cut(s)	132
BseMI	GCAATG	1 cut(s)	146
BseSI	GKGCMC	1 cut(s)	115
BseXI	GCAGC	2 cut(s)	123, 130
BshNI	GGYRCC	1 cut(s)	110
BshVI	ATCGAT	1 cut(s)	93
BsiSI	CCGG	1 cut(s)	117
BslI	CCNNNNNNNGG	1 cut(s)	132
Bsp1286I	GDGCHC	1 cut(s)	115
BspDI	ATCGAT	1 cut(s)	93
BspLI	GGNNCC	1 cut(s)	112
BspT107I	GGYRCC	1 cut(s)	110
BsrDI	GCAATG	1 cut(s)	146
BssECI	CCNNGG	1 cut(s)	115
Bst2UI	CCWGG	1 cut(s)	127
BstC8I	GCNNGC	1 cut(s)	141
BstMWI	GCNNNNNNNGC	1 cut(s)	157
BstNI	CCWGG	1 cut(s)	127
BstSCI	CCNGG	2 cut(s)	115, 125
BstSFI	CTRYAG	1 cut(s)	70
BstSLI	GKGCMC	1 cut(s)	115
BstV1I	GCAGC	2 cut(s)	123, 130
Bsu15I	ATCGAT	1 cut(s)	93
BsuTUI	ATCGAT	1 cut(s)	93
Cac8I	GCNNGC	1 cut(s)	141
ClaI	ATCGAT	1 cut(s)	93
CviAII	CATG	2 cut(s)	101, 198
CviJI	RGCY	4 cut(s)	43, 136, 143, 190
CviKI_1	RGCY	4 cut(s)	43, 136, 143, 190
EcoRI	GAATTC	1 cut(s)	35
EcoRII	CCWGG	1 cut(s)	125
FaeI	CATG	2 cut(s)	104, 201
FaiI	YATR	4 cut(s)	102, 162, 164, 199
FatI	CATG	2 cut(s)	100, 197
Fnu4HI	GCNGC	2 cut(s)	137, 144
Fsp4HI	GCNGC	2 cut(s)	137, 144
FspBI	CTAG	1 cut(s)	32
GluI	GCNGC	2 cut(s)	137, 144
GsuI	CTGGAG	1 cut(s)	140
HapII	CCGG	1 cut(s)	117
Hin1II	CATG	2 cut(s)	104, 201
HinfI	GANTC	2 cut(s)	5, 21
HpaII	CCGG	1 cut(s)	117
Hpy188III	TCNNGA	2 cut(s)	13, 184
HpyAV	CCTTC	1 cut(s)	124
HpyCH4V	TGCA	3 cut(s)	146, 151, 197
HpyF10VI	GCNNNNNNNGC	1 cut(s)	157
Hsp92II	CATG	2 cut(s)	104, 201
LpnPI	CCDG	6 cut(s)	112, 125, 130, 139, 170, 197
Lsp1109I	GCAGC	2 cut(s)	123, 130
LweI	GCATC	1 cut(s)	160
MaeI	CTAG	1 cut(s)	32
MhlI	GDGCHC	1 cut(s)	115
MluCI	AATT	1 cut(s)	35
MmeI	TCCRAC	1 cut(s)	39
MnlI	CCTC	2 cut(s)	35, 55
MslI	CAYNNNNRTG	1 cut(s)	165
MspI	CCGG	1 cut(s)	117
MspR9I	CCNGG	2 cut(s)	117, 127
MvaI	CCWGG	1 cut(s)	127
MwoI	GCNNNNNNNGC	1 cut(s)	157
NciI	CCSGG	1 cut(s)	117
NlaIII	CATG	2 cut(s)	104, 201
NlaIV	GGNNCC	1 cut(s)	112
PfeI	GAWTC	2 cut(s)	5, 21
PkrI	GCNGC	2 cut(s)	138, 145
Psp6I	CCWGG	1 cut(s)	125
PspGI	CCWGG	1 cut(s)	125
PspN4I	GGNNCC	1 cut(s)	112
RseI	CAYNNNNRTG	1 cut(s)	165
SatI	GCNGC	2 cut(s)	137, 144
ScrFI	CCNGG	2 cut(s)	117, 127
SduI	GDGCHC	1 cut(s)	115
SetI	ASST	4 cut(s)	45, 112, 128, 192
SfaNI	GCATC	1 cut(s)	160
SfcI	CTRYAG	1 cut(s)	70
SmiMI	CAYNNNNRTG	1 cut(s)	165
Sse9I	AATT	1 cut(s)	35
SspMI	CTAG	1 cut(s)	32
StyD4I	CCNGG	2 cut(s)	115, 125
TaqI	TCGA	2 cut(s)	47, 93
TasI	AATT	1 cut(s)	35
TfiI	GAWTC	2 cut(s)	5, 21
TseI	GCWGC	2 cut(s)	136, 143
TspDTI	ATGAA	1 cut(s)	89
XapI	RAATTY	1 cut(s)	35
XspI	CTAG	1 cut(s)	32

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.