Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr09

Orthogroup ID

OG0001981

Physical Location & Seq

Genomic Coordinates Forward (+)

896218 .. 896767

Gene Structure 550 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD09G1013900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 408 bp

ATGCTGGGCTCGGACGGGTGGGTCCCGGGAAGAGGTGTGCAGTGGGTGCCGATCGGAGACAGAGGCGCGAAGAAGCACTTTTACGCCGAGAGGCTCTCGAAGCTGCTGGAAGTTCGGAACATTTCTATGGGATCCCTCATCCGCCAGGAGCTCAACCCTCGCTCTTCTCTCTACAAGGAGGTTAAATTCTCCGTTCGAAATCTAAATCTGCAGTCAAAGGAAGAACTGAAGTCTTCCCCTGCCGATGCAGAGCAGACCAAGTCGCTGGAAGATTACTACAGAAAACAGAACAAACTCATCGATTTTCAGGTCCAAGCCGCACCCGGAGAAACCTGGCAGGGGCTGTTGGCTGCGTTACATCTTCAGCATATAAATGCTGTCAATTCTTCCCAGAAGCTCACTGCGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00230 ko00730 ko01100 ko01110 ko01130 map00230 map00730 map01100 map01110 map01130

Pfam Domains

Protein Families

ADK

Protein Analysis

136

Amino Acids

15.25

Weight (kDa)

9.56

Isoelectric Point (pI)

49.25

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001981)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G01820
fragaria_vesca	FvH4_6g53130
malus_domestica	MD06G1144200.v1.1 MD09G1013900.v1.1 MD09G1014300.v1.1 MD17G1014400.v1.1
prunus_persica	Prupe.3G303400_v2.0.a1
pyrus_communis	pycom06g13370 pycom07g09870
rosa_chinensis	RchiOBHm_Chr2g0175001 RchiOBHm_Chr7g0190491
rosa_laevigata	RLG00000004522 RLG00000010233 RLG00000022307 RLG00000022322
rosa_multiflora	Rmu_co7982852.1_g000001 Rmu_sc0001716.1_g000035 Rmu_sc0003920.1_g000002 Rmu_sc0010642.1_g000002 Rmu_sc0010806.1_g000001 Rmu_sc0014601.1_g000013 Rmu_sc0020514.1_g000002
rosa_roxburghii	Rroxscaffold_2G00077590 Rroxscaffold_3G00264550 Rroxscaffold_7G00211240
rosa_rugosa	Rorug02G0581000 Rorug05G0549400 Rorug06G0504900 Rorug06G0505000 Rorug06G0505000
rosa_samantha	Rh2AG661800 Rh2BG673100 Rh2CG416400 Rh2CG636200 Rh2DG686700 Rh6AG066000 Rh6BG058800 Rh6BG059000 Rh6BG059100 Rh7AG111000 Rh7BG113900 Rh7CG116000 Rh7DG114800
rosa_wichuraiana	Rw2G054250 Rw7G009690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	20
AccB1I	GGYRCC	1 cut(s)	46
AccII	CGCG	1 cut(s)	68
AciI	CCGC	2 cut(s)	142, 318
AclWI	GGATC	2 cut(s)	126, 139
AcsI	RAATTY	1 cut(s)	185
AcuI	CTGAAG	2 cut(s)	248, 347
AdeI	CACNNNGTG	1 cut(s)	405
AfiI	CCNNNNNNNGG	2 cut(s)	32, 339
AjnI	CCWGG	2 cut(s)	144, 332
AluBI	AGCT	3 cut(s)	103, 151, 397
AluI	AGCT	3 cut(s)	103, 151, 397
Alw21I	GWGCWC	1 cut(s)	153
Alw26I	GTCTC	1 cut(s)	51
AlwI	GGATC	2 cut(s)	126, 139
AlwNI	CAGNNNCTG	1 cut(s)	343
Ama87I	CYCGRG	1 cut(s)	25
ApeKI	GCWGC	2 cut(s)	103, 350
ApoI	RAATTY	1 cut(s)	185
AspLEI	GCGC	1 cut(s)	68
AspS9I	GGNCC	2 cut(s)	22, 310
AsuC2I	CCSGG	3 cut(s)	26, 27, 324
AsuII	TTCGAA	1 cut(s)	196
AvaI	CYCGRG	1 cut(s)	25
AvaII	GGWCC	2 cut(s)	22, 310
BamHI	GGATCC	1 cut(s)	131
BanI	GGYRCC	1 cut(s)	46
BanII	GRGCYC	2 cut(s)	11, 153
BarI	GAAGNNNNNNTAC	2 cut(s)	65, 97
BbsI	GAAGAC	1 cut(s)	225
Bbv12I	GWGCWC	1 cut(s)	153
BbvI	GCAGC	2 cut(s)	90, 337
BciT130I	CCWGG	2 cut(s)	146, 334
BcnI	CCSGG	3 cut(s)	26, 27, 324
BcoDI	GTCTC	1 cut(s)	51
BfmI	CTRYAG	2 cut(s)	209, 277
BisI	GCNGC	3 cut(s)	104, 318, 351
BlsI	GCNGC	3 cut(s)	105, 319, 352
Bme1390I	CCNGG	5 cut(s)	26, 27, 146, 324, 334
Bme18I	GGWCC	2 cut(s)	22, 310
BmeT110I	CYCGRG	1 cut(s)	25
BmgT120I	GGNCC	2 cut(s)	22, 310
BmiI	GGNNCC	4 cut(s)	23, 24, 48, 133
BmrFI	CCNGG	5 cut(s)	26, 27, 146, 324, 334
BmsI	GCATC	1 cut(s)	235
BpiI	GAAGAC	1 cut(s)	225
BplI	GAGNNNNNCTC	2 cut(s)	80, 112
Bpu14I	TTCGAA	1 cut(s)	196
BpuMI	CCSGG	3 cut(s)	26, 27, 324
Bsa29I	ATCGAT	1 cut(s)	300
BsaJI	CCNNGG	1 cut(s)	25
Bsc4I	CCNNNNNNNGG	2 cut(s)	32, 339
BseBI	CCWGG	2 cut(s)	146, 334
BseCI	ATCGAT	1 cut(s)	300
BseDI	CCNNGG	1 cut(s)	25
BseGI	GGATG	1 cut(s)	138
BseLI	CCNNNNNNNGG	2 cut(s)	32, 339
BseXI	GCAGC	2 cut(s)	90, 337
BseYI	CCCAGC	1 cut(s)	4
BsgI	GTGCAG	1 cut(s)	59
Bsh1236I	CGCG	1 cut(s)	68
Bsh1285I	CGRYCG	1 cut(s)	54
BshNI	GGYRCC	1 cut(s)	46
BshVI	ATCGAT	1 cut(s)	300
BsiEI	CGRYCG	1 cut(s)	54
BsiHKAI	GWGCWC	1 cut(s)	153
BsiHKCI	CYCGRG	1 cut(s)	25
BsiSI	CCGG	2 cut(s)	26, 324
BslFI	GGGAC	1 cut(s)	8
BslI	CCNNNNNNNGG	2 cut(s)	32, 339
BsmAI	GTCTC	1 cut(s)	51
BsmFI	GGGAC	1 cut(s)	8
BsoBI	CYCGRG	1 cut(s)	25
Bsp119I	TTCGAA	1 cut(s)	196
Bsp1286I	GDGCHC	2 cut(s)	11, 153
Bsp143I	GATC	2 cut(s)	51, 131
BspACI	CCGC	2 cut(s)	142, 318
BspDI	ATCGAT	1 cut(s)	300
BspFNI	CGCG	1 cut(s)	68
BspLI	GGNNCC	4 cut(s)	23, 24, 48, 133
BspMAI	CTGCAG	1 cut(s)	213
BspPI	GGATC	2 cut(s)	126, 139
BspQI	GCTCTTC	1 cut(s)	169
BspT104I	TTCGAA	1 cut(s)	196
BspT107I	GGYRCC	1 cut(s)	46
BssECI	CCNNGG	1 cut(s)	25
BssMI	GATC	2 cut(s)	51, 131
Bst2UI	CCWGG	2 cut(s)	146, 334
Bst6I	CTCTTC	2 cut(s)	25, 169
BstAPI	GCANNNNNTGC	1 cut(s)	46
BstBI	TTCGAA	1 cut(s)	196
BstF5I	GGATG	1 cut(s)	138
BstFNI	CGCG	1 cut(s)	68
BstHHI	GCGC	1 cut(s)	68
BstKTI	GATC	2 cut(s)	54, 134
BstMAI	GTCTC	1 cut(s)	51
BstMBI	GATC	2 cut(s)	51, 131
BstMCI	CGRYCG	1 cut(s)	54
BstMWI	GCNNNNNNNGC	2 cut(s)	46, 100
BstNI	CCWGG	2 cut(s)	146, 334
BstSCI	CCNGG	5 cut(s)	24, 25, 144, 322, 332
BstSFI	CTRYAG	2 cut(s)	209, 277
BstUI	CGCG	1 cut(s)	68
BstV1I	GCAGC	2 cut(s)	90, 337
BstV2I	GAAGAC	1 cut(s)	225
BstX2I	RGATCY	1 cut(s)	131
BstXI	CCANNNNNNTGG	1 cut(s)	265
BstYI	RGATCY	1 cut(s)	131
Bsu15I	ATCGAT	1 cut(s)	300
BsuTUI	ATCGAT	1 cut(s)	300
BtsCI	GGATG	1 cut(s)	138
BtsI	GCAGTG	2 cut(s)	47, 399
BtsIMutI	CAGTG	2 cut(s)	47, 399
CaiI	CAGNNNCTG	1 cut(s)	343
CfoI	GCGC	1 cut(s)	68
Cfr13I	GGNCC	2 cut(s)	22, 310
Cfr9I	CCCGGG	1 cut(s)	25
ClaI	ATCGAT	1 cut(s)	300
CviJI	RGCY	8 cut(s)	9, 94, 103, 151, 317, 343, 350, 397
CviKI_1	RGCY	8 cut(s)	9, 94, 103, 151, 317, 343, 350, 397
DpnI	GATC	2 cut(s)	53, 133
DpnII	GATC	2 cut(s)	51, 131
DraIII	CACNNNGTG	1 cut(s)	405
DrdI	GACNNNNNNGTC	1 cut(s)	20
DseDI	GACNNNNNNGTC	1 cut(s)	20
Eam1104I	CTCTTC	2 cut(s)	25, 169
EarI	CTCTTC	2 cut(s)	25, 169
EciI	GGCGGA	1 cut(s)	131
Ecl136II	GAGCTC	1 cut(s)	151
Eco24I	GRGCYC	2 cut(s)	11, 153
Eco47I	GGWCC	2 cut(s)	22, 310
Eco53kI	GAGCTC	1 cut(s)	151
Eco57I	CTGAAG	2 cut(s)	248, 347
Eco88I	CYCGRG	1 cut(s)	25
EcoICRI	GAGCTC	1 cut(s)	151
EcoO109I	RGGNCCY	1 cut(s)	22
EcoRII	CCWGG	2 cut(s)	144, 332
EcoT38I	GRGCYC	2 cut(s)	11, 153
FaiI	YATR	3 cut(s)	128, 369, 371
FalI	AAGNNNNNCTT	2 cut(s)	62, 94
FaqI	GGGAC	1 cut(s)	8
Fnu4HI	GCNGC	3 cut(s)	104, 318, 351
FokI	GGATG	1 cut(s)	125
FriOI	GRGCYC	2 cut(s)	11, 153
Fsp4HI	GCNGC	3 cut(s)	104, 318, 351
GlaI	GCGC	1 cut(s)	67
GluI	GCNGC	3 cut(s)	104, 318, 351
GsaI	CCCAGC	1 cut(s)	8
HapII	CCGG	2 cut(s)	26, 324
HhaI	GCGC	1 cut(s)	68
Hin6I	GCGC	1 cut(s)	66
HinP1I	GCGC	1 cut(s)	66
HpaII	CCGG	2 cut(s)	26, 324
Hpy188I	TCNGA	3 cut(s)	13, 56, 117
Hpy188III	TCNNGA	1 cut(s)	97
HpyCH4V	TGCA	3 cut(s)	40, 211, 248
HpyF10VI	GCNNNNNNNGC	2 cut(s)	46, 100
HspAI	GCGC	1 cut(s)	66
KflI	GGGWCCC	1 cut(s)	22
Kzo9I	GATC	2 cut(s)	51, 131
LguI	GCTCTTC	1 cut(s)	169
LmnI	GCTCC	1 cut(s)	148
Lsp1109I	GCAGC	2 cut(s)	90, 337
LweI	GCATC	1 cut(s)	235
MaeIII	GTNAC	1 cut(s)	354
MalI	GATC	2 cut(s)	53, 133
MboI	GATC	2 cut(s)	51, 131
MboII	GAAGA	8 cut(s)	42, 82, 156, 225, 233, 281, 353, 378
MflI	RGATCY	1 cut(s)	131
MhlI	GDGCHC	2 cut(s)	11, 153
MluCI	AATT	2 cut(s)	185, 382
MnlI	CCTC	6 cut(s)	26, 56, 84, 146, 168, 172
MseI	TTAA	1 cut(s)	183
MslI	CAYNNNNRTG	2 cut(s)	125, 372
MspI	CCGG	2 cut(s)	26, 324
MspR9I	CCNGG	5 cut(s)	26, 27, 146, 324, 334
MvaI	CCWGG	2 cut(s)	146, 334
MvnI	CGCG	1 cut(s)	68
MwoI	GCNNNNNNNGC	2 cut(s)	46, 100
NciI	CCSGG	3 cut(s)	26, 27, 324
NdeII	GATC	2 cut(s)	51, 131
NlaIV	GGNNCC	4 cut(s)	23, 24, 48, 133
NmeAIII	GCCGAG	1 cut(s)	112
NspV	TTCGAA	1 cut(s)	196
PciSI	GCTCTTC	1 cut(s)	169
PflFI	GACNNNGTC	1 cut(s)	259
PkrI	GCNGC	3 cut(s)	105, 319, 352
Ple19I	CGATCG	1 cut(s)	54
PpuMI	RGGWCCY	1 cut(s)	22
Psp124BI	GAGCTC	1 cut(s)	153
Psp5II	RGGWCCY	1 cut(s)	22
Psp6I	CCWGG	2 cut(s)	144, 332
PspFI	CCCAGC	1 cut(s)	4
PspGI	CCWGG	2 cut(s)	144, 332
PspN4I	GGNNCC	4 cut(s)	23, 24, 48, 133
PspPI	GGNCC	2 cut(s)	22, 310
PspPPI	RGGWCCY	1 cut(s)	22
PstI	CTGCAG	1 cut(s)	213
PstNI	CAGNNNCTG	1 cut(s)	343
PsuI	RGATCY	1 cut(s)	131
PsyI	GACNNNGTC	1 cut(s)	259
PvuI	CGATCG	1 cut(s)	54
RseI	CAYNNNNRTG	2 cut(s)	125, 372
SacI	GAGCTC	1 cut(s)	153
SapI	GCTCTTC	1 cut(s)	169
SaqAI	TTAA	1 cut(s)	183
SatI	GCNGC	3 cut(s)	104, 318, 351
Sau3AI	GATC	2 cut(s)	51, 131
Sau96I	GGNCC	2 cut(s)	22, 310
ScrFI	CCNGG	5 cut(s)	26, 27, 146, 324, 334
SduI	GDGCHC	2 cut(s)	11, 153
SetI	ASST	7 cut(s)	37, 105, 153, 183, 312, 335, 399
SfaNI	GCATC	1 cut(s)	235
SfcI	CTRYAG	2 cut(s)	209, 277
SfuI	TTCGAA	1 cut(s)	196
SinI	GGWCC	2 cut(s)	22, 310
SmaI	CCCGGG	1 cut(s)	27
SmiMI	CAYNNNNRTG	2 cut(s)	125, 372
Sse9I	AATT	2 cut(s)	185, 382
SsiI	CCGC	2 cut(s)	142, 318
SstI	GAGCTC	1 cut(s)	153
StyD4I	CCNGG	5 cut(s)	24, 25, 144, 322, 332
TaqI	TCGA	3 cut(s)	98, 196, 300
TasI	AATT	2 cut(s)	185, 382
TauI	GCSGC	1 cut(s)	320
Tru1I	TTAA	1 cut(s)	183
Tru9I	TTAA	1 cut(s)	183
TscAI	CASTG	2 cut(s)	47, 406
TseI	GCWGC	2 cut(s)	103, 350
TspGWI	ACGGA	1 cut(s)	181
TspMI	CCCGGG	1 cut(s)	25
TspRI	CASTG	2 cut(s)	47, 406
Tth111I	GACNNNGTC	1 cut(s)	259
VpaK11BI	GGWCC	2 cut(s)	22, 310
XapI	RAATTY	1 cut(s)	185
XmaI	CCCGGG	1 cut(s)	25

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.