Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0001981

Physical Location & Seq

Genomic Coordinates Reverse (-)

64524152 .. 64525130

Gene Structure 979 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000010233

Sequence Viewer

CDS Protein Promoter (2k)

Length: 411 bp

ATGGGCACCCTCGTCCGCCAGGAGCTCAACCGTCGCTCTTCTCTCTACAAGCAGATTGCGAATGCGGTGAATGAAGGAAAGCTTGTTCAGGATGAAGTAATTTTCGCATTGTTGTCGAAAAGGCTTGAGGAAGGATACTACAGAGGTGAAAATGGATTCATTCTTGATGGGATTCCTCGAACTAGAATTCAAGCTGAGTTAGTTGACCAAATTGCAGAAATTGATCTAGTAGTGAATTTCAAATCCACTGATGACTTGAGCAAGTTGTTGGAGGATTACTACAGAAAACAGAACAAACTCATTGATTTTCACAAGAAAGGTGCCCCCGGAGAAACCTGGAAGGGCCTGCTGGCTGCATTGCATCTTCAGCATATAAATTCTGTCAGTTCTTCCCAGAAACTGACTGCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00230 ko00730 ko01100 ko01110 ko01130 map00230 map00730 map01100 map01110 map01130

Pfam Domains

Protein Families

ADK

Protein Analysis

137

Amino Acids

15.44

Weight (kDa)

7.94

Isoelectric Point (pI)

34.21

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AAA_17	PF13207	1 - 91	1.1e-06	AAA domain
ADK	PF00406	2 - 86	5e-15	Adenylate kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001981)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G01820
fragaria_vesca	FvH4_6g53130
malus_domestica	MD06G1144200.v1.1 MD09G1013900.v1.1 MD09G1014300.v1.1 MD17G1014400.v1.1
prunus_persica	Prupe.3G303400_v2.0.a1
pyrus_communis	pycom06g13370 pycom07g09870
rosa_chinensis	RchiOBHm_Chr2g0175001 RchiOBHm_Chr7g0190491
rosa_laevigata	RLG00000004522 RLG00000010233 RLG00000022307 RLG00000022322
rosa_multiflora	Rmu_co7982852.1_g000001 Rmu_sc0001716.1_g000035 Rmu_sc0003920.1_g000002 Rmu_sc0010642.1_g000002 Rmu_sc0010806.1_g000001 Rmu_sc0014601.1_g000013 Rmu_sc0020514.1_g000002
rosa_roxburghii	Rroxscaffold_2G00077590 Rroxscaffold_3G00264550 Rroxscaffold_7G00211240
rosa_rugosa	Rorug02G0581000 Rorug05G0549400 Rorug06G0504900 Rorug06G0505000 Rorug06G0505000
rosa_samantha	Rh2AG661800 Rh2BG673100 Rh2CG416400 Rh2CG636200 Rh2DG686700 Rh6AG066000 Rh6BG058800 Rh6BG059000 Rh6BG059100 Rh7AG111000 Rh7BG113900 Rh7CG116000 Rh7DG114800
rosa_wichuraiana	Rw2G054250 Rw7G009690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	5, 320
AciI	CCGC	2 cut(s)	16, 65
AcsI	RAATTY	3 cut(s)	186, 235, 376
AcuI	CTGAAG	1 cut(s)	350
AgsI	TTSAA	2 cut(s)	191, 241
AjnI	CCWGG	2 cut(s)	18, 335
AloI	GAACNNNNNNTCC	2 cut(s)	69, 101
AluBI	AGCT	3 cut(s)	25, 82, 194
AluI	AGCT	3 cut(s)	25, 82, 194
Alw21I	GWGCWC	1 cut(s)	27
AlwNI	CAGNNNCTG	1 cut(s)	400
AoxI	GGCC	1 cut(s)	343
ApeKI	GCWGC	1 cut(s)	353
ApoI	RAATTY	3 cut(s)	186, 235, 376
AspS9I	GGNCC	1 cut(s)	343
AsuC2I	CCSGG	1 cut(s)	327
AsuHPI	GGTGA	2 cut(s)	79, 158
BaeGI	GKGCMC	2 cut(s)	8, 325
BanI	GGYRCC	2 cut(s)	5, 320
BanII	GRGCYC	1 cut(s)	27
Bbv12I	GWGCWC	1 cut(s)	27
BbvI	GCAGC	1 cut(s)	340
BccI	CCATC	1 cut(s)	161
BcgI	CGANNNNNNTGC	2 cut(s)	96, 130
BciT130I	CCWGG	2 cut(s)	20, 337
BciVI	GTATCC	1 cut(s)	128
BcnI	CCSGG	1 cut(s)	327
BfaI	CTAG	2 cut(s)	183, 227
BfmI	CTRYAG	2 cut(s)	139, 280
BfuI	GTATCC	1 cut(s)	128
BisI	GCNGC	1 cut(s)	354
BlsI	GCNGC	1 cut(s)	355
Bme1390I	CCNGG	3 cut(s)	20, 327, 337
BmgT120I	GGNCC	1 cut(s)	343
BmiI	GGNNCC	2 cut(s)	7, 322
BmrFI	CCNGG	3 cut(s)	20, 327, 337
BmsI	GCATC	1 cut(s)	370
BpuEI	CTTGAG	2 cut(s)	146, 277
BpuMI	CCSGG	1 cut(s)	327
BsaJI	CCNNGG	1 cut(s)	325
Bse3DI	GCAATG	1 cut(s)	356
BseBI	CCWGG	2 cut(s)	20, 337
BseDI	CCNNGG	1 cut(s)	325
BseGI	GGATG	1 cut(s)	97
BseMI	GCAATG	1 cut(s)	356
BseMII	CTCAG	1 cut(s)	186
BseSI	GKGCMC	2 cut(s)	8, 325
BseXI	GCAGC	1 cut(s)	340
BshFI	GGCC	1 cut(s)	345
BshNI	GGYRCC	2 cut(s)	5, 320
BsiHKAI	GWGCWC	1 cut(s)	27
BsiSI	CCGG	1 cut(s)	327
BsmI	GAATGC	1 cut(s)	67
BsnI	GGCC	1 cut(s)	345
Bsp1286I	GDGCHC	3 cut(s)	8, 27, 325
Bsp143I	GATC	1 cut(s)	223
BspACI	CCGC	2 cut(s)	16, 65
BspANI	GGCC	1 cut(s)	345
BspCNI	CTCAG	1 cut(s)	187
BspLI	GGNNCC	2 cut(s)	7, 322
BspQI	GCTCTTC	1 cut(s)	43
BspT107I	GGYRCC	2 cut(s)	5, 320
BsrDI	GCAATG	1 cut(s)	356
BssECI	CCNNGG	1 cut(s)	325
BssMI	GATC	1 cut(s)	223
Bst2UI	CCWGG	2 cut(s)	20, 337
Bst4CI	ACNGT	1 cut(s)	32
Bst6I	CTCTTC	1 cut(s)	43
BstC8I	GCNNGC	2 cut(s)	347, 351
BstDEI	CTNAG	1 cut(s)	195
BstF5I	GGATG	1 cut(s)	97
BstKTI	GATC	1 cut(s)	226
BstMBI	GATC	1 cut(s)	223
BstMWI	GCNNNNNNNGC	1 cut(s)	367
BstNI	CCWGG	2 cut(s)	20, 337
BstSCI	CCNGG	3 cut(s)	18, 325, 335
BstSFI	CTRYAG	2 cut(s)	139, 280
BstSLI	GKGCMC	2 cut(s)	8, 325
BstV1I	GCAGC	1 cut(s)	340
BsuI	GTATCC	1 cut(s)	128
BsuRI	GGCC	1 cut(s)	345
BtsCI	GGATG	1 cut(s)	97
BtsIMutI	CAGTG	1 cut(s)	246
Cac8I	GCNNGC	2 cut(s)	347, 351
CaiI	CAGNNNCTG	1 cut(s)	400
Cfr13I	GGNCC	1 cut(s)	343
CviAII	CATG	1 cut(s)	408
CviJI	RGCY	6 cut(s)	25, 82, 124, 194, 345, 353
CviKI_1	RGCY	6 cut(s)	25, 82, 124, 194, 345, 353
DdeI	CTNAG	1 cut(s)	195
DpnI	GATC	1 cut(s)	225
DpnII	GATC	1 cut(s)	223
Eam1104I	CTCTTC	1 cut(s)	43
EarI	CTCTTC	1 cut(s)	43
EciI	GGCGGA	1 cut(s)	5
Ecl136II	GAGCTC	1 cut(s)	25
Eco24I	GRGCYC	1 cut(s)	27
Eco53kI	GAGCTC	1 cut(s)	25
Eco57I	CTGAAG	1 cut(s)	350
EcoICRI	GAGCTC	1 cut(s)	25
EcoO109I	RGGNCCY	1 cut(s)	343
EcoRI	GAATTC	1 cut(s)	186
EcoRII	CCWGG	2 cut(s)	18, 335
EcoT38I	GRGCYC	1 cut(s)	27
FaeI	CATG	1 cut(s)	411
FaiI	YATR	3 cut(s)	372, 374, 409
FalI	AAGNNNNNCTT	2 cut(s)	66, 98
FatI	CATG	1 cut(s)	407
Fnu4HI	GCNGC	1 cut(s)	354
FokI	GGATG	1 cut(s)	104
FriOI	GRGCYC	1 cut(s)	27
Fsp4HI	GCNGC	1 cut(s)	354
FspBI	CTAG	2 cut(s)	183, 227
GluI	GCNGC	1 cut(s)	354
HaeIII	GGCC	1 cut(s)	345
HapII	CCGG	1 cut(s)	327
Hin1II	CATG	1 cut(s)	411
HincII	GTYRAC	1 cut(s)	205
HindII	GTYRAC	1 cut(s)	205
HindIII	AAGCTT	1 cut(s)	80
HinfI	GANTC	2 cut(s)	156, 172
HpaII	CCGG	1 cut(s)	327
HphI	GGTGA	2 cut(s)	79, 158
Hpy166II	GTNNAC	1 cut(s)	205
Hpy188III	TCNNGA	2 cut(s)	89, 164
Hpy8I	GTNNAC	1 cut(s)	205
Hpy99I	CGWCG	1 cut(s)	36
HpyAV	CCTTC	3 cut(s)	68, 125, 334
HpyCH4III	ACNGT	1 cut(s)	32
HpyCH4V	TGCA	4 cut(s)	215, 356, 361, 407
HpyF10VI	GCNNNNNNNGC	1 cut(s)	367
HpyF3I	CTNAG	1 cut(s)	195
Hsp92II	CATG	1 cut(s)	411
Kzo9I	GATC	1 cut(s)	223
LguI	GCTCTTC	1 cut(s)	43
LmnI	GCTCC	1 cut(s)	22
LpnPI	CCDG	9 cut(s)	5, 32, 74, 322, 335, 340, 349, 359, 407
Lsp1109I	GCAGC	1 cut(s)	340
LweI	GCATC	1 cut(s)	370
MaeI	CTAG	2 cut(s)	183, 227
MalI	GATC	1 cut(s)	225
MboI	GATC	1 cut(s)	223
MboII	GAAGA	3 cut(s)	30, 356, 381
MhlI	GDGCHC	3 cut(s)	8, 27, 325
MluCI	AATT	6 cut(s)	99, 186, 210, 219, 235, 376
MmeI	TCCRAC	1 cut(s)	249
MnlI	CCTC	5 cut(s)	20, 121, 137, 186, 265
MspI	CCGG	1 cut(s)	327
MspR9I	CCNGG	3 cut(s)	20, 327, 337
Mva1269I	GAATGC	1 cut(s)	67
MvaI	CCWGG	2 cut(s)	20, 337
MwoI	GCNNNNNNNGC	1 cut(s)	367
NciI	CCSGG	1 cut(s)	327
NdeII	GATC	1 cut(s)	223
NlaIII	CATG	1 cut(s)	411
NlaIV	GGNNCC	2 cut(s)	7, 322
PciSI	GCTCTTC	1 cut(s)	43
PctI	GAATGC	1 cut(s)	67
PfeI	GAWTC	2 cut(s)	156, 172
PkrI	GCNGC	1 cut(s)	355
Psp124BI	GAGCTC	1 cut(s)	27
Psp6I	CCWGG	2 cut(s)	18, 335
PspGI	CCWGG	2 cut(s)	18, 335
PspN4I	GGNNCC	2 cut(s)	7, 322
PspPI	GGNCC	1 cut(s)	343
PstNI	CAGNNNCTG	1 cut(s)	400
SacI	GAGCTC	1 cut(s)	27
SapI	GCTCTTC	1 cut(s)	43
SatI	GCNGC	1 cut(s)	354
Sau3AI	GATC	1 cut(s)	223
Sau96I	GGNCC	1 cut(s)	343
ScrFI	CCNGG	3 cut(s)	20, 327, 337
SduI	GDGCHC	3 cut(s)	8, 27, 325
SetI	ASST	6 cut(s)	27, 84, 148, 196, 322, 338
SfaNI	GCATC	1 cut(s)	370
SfcI	CTRYAG	2 cut(s)	139, 280
SmlI	CTYRAG	2 cut(s)	125, 256
SmoI	CTYRAG	2 cut(s)	125, 256
Sse9I	AATT	6 cut(s)	99, 186, 210, 219, 235, 376
SsiI	CCGC	2 cut(s)	16, 65
SspMI	CTAG	2 cut(s)	183, 227
SstI	GAGCTC	1 cut(s)	27
StyD4I	CCNGG	3 cut(s)	18, 325, 335
TaaI	ACNGT	1 cut(s)	32
TaqI	TCGA	2 cut(s)	116, 178
TasI	AATT	6 cut(s)	99, 186, 210, 219, 235, 376
TfiI	GAWTC	2 cut(s)	156, 172
TscAI	CASTG	1 cut(s)	253
TseI	GCWGC	1 cut(s)	353
TspDTI	ATGAA	3 cut(s)	87, 108, 148
TspRI	CASTG	1 cut(s)	253
XapI	RAATTY	3 cut(s)	186, 235, 376
XspI	CTAG	2 cut(s)	183, 227

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.