Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0001981

Physical Location & Seq

Genomic Coordinates Forward (+)

9325624 .. 9329545

Gene Structure 3922 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG058800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 411 bp

ATGAAGCAGAATCAGTTATTGAAGATGATCATTCCCAGGAAAATGTTTGGAGGTGCGAAGAAGCACGTGTACGCCGAGAGGCTCTCGAAGCTTCTGGAAGTTCCCCACATTTTCACCCTCGTCCGCCAGGAGCTCAACCCTCGCTCTTCTCTGTACAAGCAGATTGCGAATGCGGTGAATGACGGAAAGCTTGTTCAGGATGAAGTGATTTTTGCATTGTTGTCGGAAAAGGCTCGAGGAAGGATACTACAGAGATCGAGCAAGTTGTTGGAGGATTACTACAGAAAACAGAACAAACTCATCGATTTTCATGTGAAAGGTGCCCCCGGAGAAACCTGGAAGGGGCTGCTGGCTGCATTGCATCTCCAGCATATAAATGCTGTCAGTTCTTTCCAGAAGCTAACTGCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00230 ko00730 ko01100 ko01110 ko01130 map00230 map00730 map01100 map01110 map01130

Pfam Domains

Protein Families

ADK

Protein Analysis

136

Amino Acids

15.58

Weight (kDa)

10.13

Isoelectric Point (pI)

44.73

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001981)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G01820
fragaria_vesca	FvH4_6g53130
malus_domestica	MD06G1144200.v1.1 MD09G1013900.v1.1 MD09G1014300.v1.1 MD17G1014400.v1.1
prunus_persica	Prupe.3G303400_v2.0.a1
pyrus_communis	pycom06g13370 pycom07g09870
rosa_chinensis	RchiOBHm_Chr2g0175001 RchiOBHm_Chr7g0190491
rosa_laevigata	RLG00000004522 RLG00000010233 RLG00000022307 RLG00000022322
rosa_multiflora	Rmu_co7982852.1_g000001 Rmu_sc0001716.1_g000035 Rmu_sc0003920.1_g000002 Rmu_sc0010642.1_g000002 Rmu_sc0010806.1_g000001 Rmu_sc0014601.1_g000013 Rmu_sc0020514.1_g000002
rosa_roxburghii	Rroxscaffold_2G00077590 Rroxscaffold_3G00264550 Rroxscaffold_7G00211240
rosa_rugosa	Rorug02G0581000 Rorug05G0549400 Rorug06G0504900 Rorug06G0505000 Rorug06G0505000
rosa_samantha	Rh2AG661800 Rh2BG673100 Rh2CG416400 Rh2CG636200 Rh2DG686700 Rh6AG066000 Rh6BG058800 Rh6BG059000 Rh6BG059100 Rh7AG111000 Rh7BG113900 Rh7CG116000 Rh7DG114800
rosa_wichuraiana	Rw2G054250 Rw7G009690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	320
AciI	CCGC	2 cut(s)	124, 173
AcvI	CACGTG	1 cut(s)	67
AfaI	GTAC	2 cut(s)	71, 155
AfiI	CCNNNNNNNGG	1 cut(s)	342
AflIII	ACRYGT	1 cut(s)	66
AgsI	TTSAA	1 cut(s)	22
AjnI	CCWGG	3 cut(s)	35, 126, 335
AloI	GAACNNNNNNTCC	2 cut(s)	177, 209
AluBI	AGCT	4 cut(s)	91, 133, 190, 400
AluI	AGCT	4 cut(s)	91, 133, 190, 400
Alw21I	GWGCWC	1 cut(s)	135
Ama87I	CYCGRG	1 cut(s)	234
ApeKI	GCWGC	2 cut(s)	346, 353
AsuC2I	CCSGG	1 cut(s)	327
AsuHPI	GGTGA	2 cut(s)	106, 187
AvaI	CYCGRG	1 cut(s)	234
BaeGI	GKGCMC	1 cut(s)	325
BanI	GGYRCC	1 cut(s)	320
BanII	GRGCYC	1 cut(s)	135
BarI	GAAGNNNNNNTAC	2 cut(s)	53, 85
BbrPI	CACGTG	1 cut(s)	67
Bbv12I	GWGCWC	1 cut(s)	135
BbvI	GCAGC	2 cut(s)	333, 340
BcgI	CGANNNNNNTGC	2 cut(s)	204, 238
BciT130I	CCWGG	3 cut(s)	37, 128, 337
BciVI	GTATCC	1 cut(s)	237
BclI	TGATCA	1 cut(s)	27
BcnI	CCSGG	1 cut(s)	327
BfmI	CTRYAG	2 cut(s)	248, 280
BfuI	GTATCC	1 cut(s)	237
BisI	GCNGC	2 cut(s)	347, 354
BlsI	GCNGC	2 cut(s)	348, 355
Bme1390I	CCNGG	4 cut(s)	37, 128, 327, 337
BmeT110I	CYCGRG	1 cut(s)	234
BmiI	GGNNCC	1 cut(s)	322
BmrFI	CCNGG	4 cut(s)	37, 128, 327, 337
BmsI	GCATC	1 cut(s)	370
BplI	GAGNNNNNCTC	2 cut(s)	68, 100
BpmI	CTGGAG	1 cut(s)	350
BpuMI	CCSGG	1 cut(s)	327
Bsa29I	ATCGAT	1 cut(s)	303
BsaAI	YACGTR	1 cut(s)	67
BsaJI	CCNNGG	2 cut(s)	35, 325
Bsc4I	CCNNNNNNNGG	1 cut(s)	342
Bse3DI	GCAATG	1 cut(s)	356
BseBI	CCWGG	3 cut(s)	37, 128, 337
BseCI	ATCGAT	1 cut(s)	303
BseDI	CCNNGG	2 cut(s)	35, 325
BseGI	GGATG	1 cut(s)	205
BseLI	CCNNNNNNNGG	1 cut(s)	342
BseMI	GCAATG	1 cut(s)	356
BseSI	GKGCMC	1 cut(s)	325
BseXI	GCAGC	2 cut(s)	333, 340
BshNI	GGYRCC	1 cut(s)	320
BshVI	ATCGAT	1 cut(s)	303
BsiHKAI	GWGCWC	1 cut(s)	135
BsiHKCI	CYCGRG	1 cut(s)	234
BsiSI	CCGG	1 cut(s)	327
BslI	CCNNNNNNNGG	1 cut(s)	342
BsmI	GAATGC	1 cut(s)	175
BsoBI	CYCGRG	1 cut(s)	234
Bsp1286I	GDGCHC	2 cut(s)	135, 325
Bsp1407I	TGTACA	1 cut(s)	153
Bsp143I	GATC	2 cut(s)	27, 254
BspACI	CCGC	2 cut(s)	124, 173
BspDI	ATCGAT	1 cut(s)	303
BspLI	GGNNCC	1 cut(s)	322
BspQI	GCTCTTC	1 cut(s)	151
BspT107I	GGYRCC	1 cut(s)	320
BsrDI	GCAATG	1 cut(s)	356
BsrGI	TGTACA	1 cut(s)	153
BssECI	CCNNGG	2 cut(s)	35, 325
BssMI	GATC	2 cut(s)	27, 254
Bst2UI	CCWGG	3 cut(s)	37, 128, 337
Bst6I	CTCTTC	1 cut(s)	151
BstAUI	TGTACA	1 cut(s)	153
BstBAI	YACGTR	1 cut(s)	67
BstC8I	GCNNGC	1 cut(s)	351
BstF5I	GGATG	1 cut(s)	205
BstKTI	GATC	2 cut(s)	30, 257
BstMBI	GATC	2 cut(s)	27, 254
BstMWI	GCNNNNNNNGC	2 cut(s)	88, 367
BstNI	CCWGG	3 cut(s)	37, 128, 337
BstSCI	CCNGG	4 cut(s)	35, 126, 325, 335
BstSFI	CTRYAG	2 cut(s)	248, 280
BstSLI	GKGCMC	1 cut(s)	325
BstV1I	GCAGC	2 cut(s)	333, 340
Bsu15I	ATCGAT	1 cut(s)	303
BsuI	GTATCC	1 cut(s)	237
BsuTUI	ATCGAT	1 cut(s)	303
BtsCI	GGATG	1 cut(s)	205
Cac8I	GCNNGC	1 cut(s)	351
ClaI	ATCGAT	1 cut(s)	303
Csp6I	GTAC	2 cut(s)	70, 154
CviAII	CATG	2 cut(s)	311, 408
CviJI	RGCY	8 cut(s)	82, 91, 133, 190, 233, 346, 353, 400
CviKI_1	RGCY	8 cut(s)	82, 91, 133, 190, 233, 346, 353, 400
CviQI	GTAC	2 cut(s)	70, 154
DpnI	GATC	2 cut(s)	29, 256
DpnII	GATC	2 cut(s)	27, 254
Eam1104I	CTCTTC	1 cut(s)	151
EarI	CTCTTC	1 cut(s)	151
EciI	GGCGGA	1 cut(s)	113
Ecl136II	GAGCTC	1 cut(s)	133
Eco24I	GRGCYC	1 cut(s)	135
Eco53kI	GAGCTC	1 cut(s)	133
Eco72I	CACGTG	1 cut(s)	67
Eco88I	CYCGRG	1 cut(s)	234
EcoICRI	GAGCTC	1 cut(s)	133
EcoRII	CCWGG	3 cut(s)	35, 126, 335
EcoT38I	GRGCYC	1 cut(s)	135
FaeI	CATG	2 cut(s)	314, 411
FaiI	YATR	4 cut(s)	312, 372, 374, 409
FatI	CATG	2 cut(s)	310, 407
FbaI	TGATCA	1 cut(s)	27
Fnu4HI	GCNGC	2 cut(s)	347, 354
FokI	GGATG	1 cut(s)	212
FriOI	GRGCYC	1 cut(s)	135
Fsp4HI	GCNGC	2 cut(s)	347, 354
GluI	GCNGC	2 cut(s)	347, 354
GsuI	CTGGAG	1 cut(s)	350
HapII	CCGG	1 cut(s)	327
Hin1II	CATG	2 cut(s)	314, 411
HindIII	AAGCTT	2 cut(s)	89, 188
HinfI	GANTC	1 cut(s)	10
HpaII	CCGG	1 cut(s)	327
HphI	GGTGA	2 cut(s)	106, 187
Hpy166II	GTNNAC	1 cut(s)	70
Hpy188I	TCNGA	1 cut(s)	226
Hpy188III	TCNNGA	4 cut(s)	85, 95, 197, 394
Hpy8I	GTNNAC	1 cut(s)	70
HpyAV	CCTTC	2 cut(s)	234, 334
HpyCH4IV	ACGT	1 cut(s)	66
HpyCH4V	TGCA	4 cut(s)	215, 356, 361, 407
HpyF10VI	GCNNNNNNNGC	2 cut(s)	88, 367
HpySE526I	ACGT	1 cut(s)	66
Hsp92II	CATG	2 cut(s)	314, 411
Ksp22I	TGATCA	1 cut(s)	27
Kzo9I	GATC	2 cut(s)	27, 254
LguI	GCTCTTC	1 cut(s)	151
LmnI	GCTCC	1 cut(s)	130
Lsp1109I	GCAGC	2 cut(s)	333, 340
LweI	GCATC	1 cut(s)	370
MaeII	ACGT	1 cut(s)	66
MalI	GATC	2 cut(s)	29, 256
MboI	GATC	2 cut(s)	27, 254
MboII	GAAGA	3 cut(s)	34, 70, 138
MhlI	GDGCHC	2 cut(s)	135, 325
MmeI	TCCRAC	2 cut(s)	204, 249
MnlI	CCTC	6 cut(s)	44, 72, 128, 150, 230, 265
MslI	CAYNNNNRTG	1 cut(s)	375
MspI	CCGG	1 cut(s)	327
MspR9I	CCNGG	4 cut(s)	37, 128, 327, 337
Mva1269I	GAATGC	1 cut(s)	175
MvaI	CCWGG	3 cut(s)	37, 128, 337
MwoI	GCNNNNNNNGC	2 cut(s)	88, 367
NciI	CCSGG	1 cut(s)	327
NdeII	GATC	2 cut(s)	27, 254
NlaIII	CATG	2 cut(s)	314, 411
NlaIV	GGNNCC	1 cut(s)	322
NmeAIII	GCCGAG	1 cut(s)	100
PaeR7I	CTCGAG	1 cut(s)	234
PciSI	GCTCTTC	1 cut(s)	151
PcsI	WCGNNNNNNNCGW	1 cut(s)	72
PctI	GAATGC	1 cut(s)	175
PfeI	GAWTC	1 cut(s)	10
PkrI	GCNGC	2 cut(s)	348, 355
PmaCI	CACGTG	1 cut(s)	67
PmlI	CACGTG	1 cut(s)	67
Ppu21I	YACGTR	1 cut(s)	67
Psp124BI	GAGCTC	1 cut(s)	135
Psp6I	CCWGG	3 cut(s)	35, 126, 335
PspCI	CACGTG	1 cut(s)	67
PspGI	CCWGG	3 cut(s)	35, 126, 335
PspN4I	GGNNCC	1 cut(s)	322
PspXI	VCTCGAGB	1 cut(s)	234
RsaI	GTAC	2 cut(s)	71, 155
RsaNI	GTAC	2 cut(s)	70, 154
RseI	CAYNNNNRTG	1 cut(s)	375
SacI	GAGCTC	1 cut(s)	135
SapI	GCTCTTC	1 cut(s)	151
SatI	GCNGC	2 cut(s)	347, 354
Sau3AI	GATC	2 cut(s)	27, 254
ScrFI	CCNGG	4 cut(s)	37, 128, 327, 337
SduI	GDGCHC	2 cut(s)	135, 325
SetI	ASST	8 cut(s)	55, 69, 93, 135, 192, 322, 338, 402
SfaNI	GCATC	1 cut(s)	370
SfcI	CTRYAG	2 cut(s)	248, 280
Sfr274I	CTCGAG	1 cut(s)	234
SlaI	CTCGAG	1 cut(s)	234
SmiMI	CAYNNNNRTG	1 cut(s)	375
SmlI	CTYRAG	1 cut(s)	234
SmoI	CTYRAG	1 cut(s)	234
SsiI	CCGC	2 cut(s)	124, 173
SstI	GAGCTC	1 cut(s)	135
StyD4I	CCNGG	4 cut(s)	35, 126, 325, 335
TaiI	ACGT	1 cut(s)	69
TaqI	TCGA	4 cut(s)	86, 235, 257, 303
TatI	WGTACW	1 cut(s)	153
TfiI	GAWTC	1 cut(s)	10
TseI	GCWGC	2 cut(s)	346, 353
TspDTI	ATGAA	3 cut(s)	17, 216, 299
TspGWI	ACGGA	1 cut(s)	198
XhoI	CTCGAG	1 cut(s)	234

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.