Rmu_sc0014601.1_g000013

Adenylate kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0014601.1
OG0001981
Physical Location & Seq
Forward (+)
40764 .. 42193
1430 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0014601.1_g000013.1.cds

Sequence Viewer

Length: 741 bp
atgatcaaactacgccctttaatttcccctgccgccgccgccgcgccgcctctactccgtcttctgcggctcaccctgagccgactctcctcctccgccgccgcggctcagccgattctcgattacgactactaccagctccaccacgcgccgccgcgcgatcaagctccgttggcggacgcggcgggctcggttcccgtgaggggagtgcggtgggcgttcatagggagcccaatcgccaagaggcacgtctacgccgagagaatctccaagcttcttcaaattcctcacatttccatggccaccctcgtccgtcaagaccttcaccctcactcctctctctacaaccagattgcgaatgccgtgaatcggggggagattgtggcggaggaggatatactattagggttgttgtcaaagagattggaagatggatattggagaggagagagtggatttatactggatggaattcctcgttccaagatccaagctgaaattctttcacaactggttgagattgatctagtggtgaatttcaaatgcacagaacattgcttggtgaaacacaaaagagaagctgcctggagggagaaactccaaatctttgccgagcagagtaagccactagaagattactacaagaaagaggaaaagcttcttgactttcaagtcagtagtgcacctggggagacttggaaagggctcttggctactctgcatctacactcttcactgtag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00230 ko00730 ko01100 ko01110 ko01130 map00230 map00730 map01100 map01110 map01130
Pfam Domains
Protein Families
ADK

Protein Analysis

246

Amino Acids

27.57

Weight (kDa)

8.79

Isoelectric Point (pI)

54.43

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 671
AccI GTMKAC 1 cut(s) 252
AccII CGCG 6 cut(s) 44, 104, 149, 157, 159, 182
AclWI GGATC 1 cut(s) 481
AcoI YGGCCR 1 cut(s) 300
AcsI RAATTY 4 cut(s) 282, 471, 498, 535
AfiI CCNNNNNNNGG 2 cut(s) 203, 369
AgsI TTSAA 3 cut(s) 281, 541, 671
AjiI CACGTC 1 cut(s) 250
AjnI CCWGG 2 cut(s) 584, 685
AjuI GAANNNNNNNTTGG 4 cut(s) 483, 515, 692, 724
AluBI AGCT 6 cut(s) 139, 167, 274, 494, 581, 658
AluI AGCT 6 cut(s) 139, 167, 274, 494, 581, 658
Alw21I GWGCWC 1 cut(s) 685
Alw26I GTCTC 1 cut(s) 686
Alw44I GTGCAC 1 cut(s) 681
AlwI GGATC 1 cut(s) 481
AoxI GGCC 1 cut(s) 300
ApaLI GTGCAC 1 cut(s) 681
ApeKI GCWGC 1 cut(s) 581
ApoI RAATTY 4 cut(s) 282, 471, 498, 535
Asp700I GAANNNNTTC 1 cut(s) 657
AspLEI GCGC 3 cut(s) 46, 151, 159
AsuHPI GGTGA 4 cut(s) 64, 317, 544, 574
BaeGI GKGCMC 1 cut(s) 685
BalI TGGCCA 1 cut(s) 302
BanII GRGCYC 3 cut(s) 191, 233, 708
BbsI GAAGAC 1 cut(s) 53
Bbv12I GWGCWC 1 cut(s) 685
BbvI GCAGC 1 cut(s) 568
BccI CCATC 2 cut(s) 425, 461
BceAI ACGGC 1 cut(s) 347
BciT130I CCWGG 2 cut(s) 586, 687
BclI TGATCA 1 cut(s) 3
BcoDI GTCTC 1 cut(s) 686
BfaI CTAG 2 cut(s) 527, 629
BfmI CTRYAG 1 cut(s) 737
BglI GCCNNNNNGGC 1 cut(s) 104
BlpI GCTNAGC 1 cut(s) 108
Bme1390I CCNGG 2 cut(s) 586, 687
BmgBI CACGTC 1 cut(s) 250
BmiI GGNNCC 2 cut(s) 195, 230
BmrFI CCNGG 2 cut(s) 586, 687
BmsI GCATC 1 cut(s) 730
BpiI GAAGAC 1 cut(s) 53
BplI GAGNNNNNCTC 2 cut(s) 251, 283
BpmI CTGGAG 1 cut(s) 607
Bpu10I CCTNAGC 1 cut(s) 77
Bpu1102I GCTNAGC 1 cut(s) 108
BsaJI CCNNGG 3 cut(s) 102, 297, 686
BsaXI ACNNNNNCTCC 2 cut(s) 317, 347
Bsc4I CCNNNNNNNGG 2 cut(s) 203, 369
Bse1I ACTGG 2 cut(s) 468, 516
Bse3DI GCAATG 1 cut(s) 553
BseBI CCWGG 2 cut(s) 586, 687
BseDI CCNNGG 3 cut(s) 102, 297, 686
BseGI GGATG 1 cut(s) 472
BseLI CCNNNNNNNGG 2 cut(s) 203, 369
BseMI GCAATG 1 cut(s) 553
BseMII CTCAG 2 cut(s) 68, 122
BseNI ACTGG 2 cut(s) 468, 516
BseRI GAGGAG 5 cut(s) 79, 82, 325, 404, 459
BseSI GKGCMC 1 cut(s) 685
BseXI GCAGC 1 cut(s) 568
Bsh1236I CGCG 6 cut(s) 44, 104, 149, 157, 159, 182
BshFI GGCC 1 cut(s) 302
BsiHKAI GWGCWC 1 cut(s) 685
BslI CCNNNNNNNGG 2 cut(s) 203, 369
BsmAI GTCTC 1 cut(s) 686
BsmI GAATGC 1 cut(s) 364
BsnI GGCC 1 cut(s) 302
Bsp1286I GDGCHC 4 cut(s) 191, 233, 685, 708
Bsp143I GATC 4 cut(s) 3, 160, 486, 523
Bsp1720I GCTNAGC 1 cut(s) 108
Bsp19I CCATGG 1 cut(s) 297
BspANI GGCC 1 cut(s) 302
BspCNI CTCAG 2 cut(s) 69, 121
BspFNI CGCG 6 cut(s) 44, 104, 149, 157, 159, 182
BspLI GGNNCC 2 cut(s) 195, 230
BspPI GGATC 1 cut(s) 481
BsrDI GCAATG 1 cut(s) 553
BsrI ACTGG 2 cut(s) 468, 516
BssECI CCNNGG 3 cut(s) 102, 297, 686
BssMI GATC 4 cut(s) 3, 160, 486, 523
BssT1I CCWWGG 1 cut(s) 297
Bst2UI CCWGG 2 cut(s) 586, 687
Bst4CI ACNGT 1 cut(s) 738
Bst6I CTCTTC 1 cut(s) 736
BstC8I GCNNGC 1 cut(s) 187
BstDEI CTNAG 2 cut(s) 77, 108
BstDSI CCRYGG 2 cut(s) 102, 297
BstF5I GGATG 1 cut(s) 472
BstFNI CGCG 6 cut(s) 44, 104, 149, 157, 159, 182
BstHHI GCGC 3 cut(s) 46, 151, 159
BstKTI GATC 4 cut(s) 6, 163, 489, 526
BstMAI GTCTC 1 cut(s) 686
BstMBI GATC 4 cut(s) 3, 160, 486, 523
BstMWI GCNNNNNNNGC 6 cut(s) 38, 41, 104, 173, 182, 622
BstNI CCWGG 2 cut(s) 586, 687
BstSCI CCNGG 2 cut(s) 584, 685
BstSFI CTRYAG 1 cut(s) 737
BstSLI GKGCMC 1 cut(s) 685
BstUI CGCG 6 cut(s) 44, 104, 149, 157, 159, 182
BstV1I GCAGC 1 cut(s) 568
BstV2I GAAGAC 1 cut(s) 53
BstX2I RGATCY 1 cut(s) 486
BstYI RGATCY 1 cut(s) 486
BsuRI GGCC 1 cut(s) 302
BtgI CCRYGG 2 cut(s) 102, 297
BtrI CACGTC 1 cut(s) 250
BtsCI GGATG 1 cut(s) 472
BtsIMutI CAGTG 1 cut(s) 734
Cac8I GCNNGC 1 cut(s) 187
CfoI GCGC 3 cut(s) 46, 151, 159
Cfr42I CCGCGG 1 cut(s) 105
CseI GACGC 1 cut(s) 188
CviAII CATG 1 cut(s) 298
DdeI CTNAG 2 cut(s) 77, 108
DpnI GATC 4 cut(s) 5, 162, 488, 525
DpnII GATC 4 cut(s) 3, 160, 486, 523
DrdI GACNNNNNNGTC 1 cut(s) 671
DseDI GACNNNNNNGTC 1 cut(s) 671
EaeI YGGCCR 1 cut(s) 300
Eam1104I CTCTTC 1 cut(s) 736
EarI CTCTTC 1 cut(s) 736
EciI GGCGGA 3 cut(s) 85, 191, 401
Eco130I CCWWGG 1 cut(s) 297
Eco24I GRGCYC 3 cut(s) 191, 233, 708
EcoRI GAATTC 1 cut(s) 471
EcoRII CCWGG 2 cut(s) 584, 685
EcoT14I CCWWGG 1 cut(s) 297
EcoT38I GRGCYC 3 cut(s) 191, 233, 708
ErhI CCWWGG 1 cut(s) 297
FaeI CATG 1 cut(s) 301
FaiI YATR 4 cut(s) 224, 299, 398, 461
FatI CATG 1 cut(s) 297
FauI CCCGC 1 cut(s) 178
FbaI TGATCA 1 cut(s) 3
FblI GTMKAC 1 cut(s) 252
FokI GGATG 1 cut(s) 479
FriOI GRGCYC 3 cut(s) 191, 233, 708
FspBI CTAG 2 cut(s) 527, 629
GlaI GCGC 3 cut(s) 45, 150, 158
GsuI CTGGAG 1 cut(s) 607
HaeIII GGCC 1 cut(s) 302
HgaI GACGC 1 cut(s) 188
HhaI GCGC 3 cut(s) 46, 151, 159
Hin1II CATG 1 cut(s) 301
Hin6I GCGC 3 cut(s) 44, 149, 157
HinP1I GCGC 3 cut(s) 44, 149, 157
HindIII AAGCTT 2 cut(s) 272, 656
HinfI GANTC 4 cut(s) 84, 115, 264, 367
HphI GGTGA 4 cut(s) 64, 317, 544, 574
Hpy166II GTNNAC 2 cut(s) 253, 683
Hpy188III TCNNGA 3 cut(s) 119, 317, 662
Hpy8I GTNNAC 2 cut(s) 253, 683
HpyAV CCTTC 1 cut(s) 332
HpyCH4III ACNGT 1 cut(s) 738
HpyCH4IV ACGT 1 cut(s) 249
HpyCH4V TGCA 3 cut(s) 546, 683, 721
HpyF10VI GCNNNNNNNGC 6 cut(s) 38, 41, 104, 173, 182, 622
HpyF3I CTNAG 2 cut(s) 77, 108
HpySE526I ACGT 1 cut(s) 249
Hsp92II CATG 1 cut(s) 301
HspAI GCGC 3 cut(s) 44, 149, 157
Ksp22I TGATCA 1 cut(s) 3
KspI CCGCGG 1 cut(s) 105
Kzo9I GATC 4 cut(s) 3, 160, 486, 523
LmnI GCTCC 3 cut(s) 144, 172, 228
Lsp1109I GCAGC 1 cut(s) 568
LweI GCATC 1 cut(s) 730
MaeI CTAG 2 cut(s) 527, 629
MaeII ACGT 1 cut(s) 249
MalI GATC 4 cut(s) 5, 162, 488, 525
MboI GATC 4 cut(s) 3, 160, 486, 523
MboII GAAGA 5 cut(s) 53, 269, 440, 644, 723
MflI RGATCY 1 cut(s) 486
MhlI GDGCHC 4 cut(s) 191, 233, 685, 708
MlsI TGGCCA 1 cut(s) 302
MluCI AATT 5 cut(s) 21, 282, 471, 498, 535
MluNI TGGCCA 1 cut(s) 302
MlyI GAGTC 1 cut(s) 78
Mox20I TGGCCA 1 cut(s) 302
MroXI GAANNNNTTC 1 cut(s) 657
MscI TGGCCA 1 cut(s) 302
MseI TTAA 1 cut(s) 20
MslI CAYNNNNRTG 1 cut(s) 296
Msp20I TGGCCA 1 cut(s) 302
MspA1I CMGCKG 1 cut(s) 104
MspR9I CCNGG 2 cut(s) 586, 687
Mva1269I GAATGC 1 cut(s) 364
MvaI CCWGG 2 cut(s) 586, 687
MvnI CGCG 6 cut(s) 44, 104, 149, 157, 159, 182
MwoI GCNNNNNNNGC 6 cut(s) 38, 41, 104, 173, 182, 622
NcoI CCATGG 1 cut(s) 297
NdeII GATC 4 cut(s) 3, 160, 486, 523
NlaIII CATG 1 cut(s) 301
NlaIV GGNNCC 2 cut(s) 195, 230
NmeAIII GCCGAG 2 cut(s) 283, 637
PcsI WCGNNNNNNNCGW 1 cut(s) 255
PctI GAATGC 1 cut(s) 364
PdmI GAANNNNTTC 1 cut(s) 657
PfeI GAWTC 3 cut(s) 115, 264, 367
PleI GAGTC 1 cut(s) 78
PpsI GAGTC 1 cut(s) 78
Psp6I CCWGG 2 cut(s) 584, 685
PspGI CCWGG 2 cut(s) 584, 685
PspN4I GGNNCC 2 cut(s) 195, 230
PsuI RGATCY 1 cut(s) 486
RseI CAYNNNNRTG 1 cut(s) 296
SacII CCGCGG 1 cut(s) 105
SaqAI TTAA 1 cut(s) 20
Sau3AI GATC 4 cut(s) 3, 160, 486, 523
SchI GAGTC 1 cut(s) 78
ScrFI CCNGG 2 cut(s) 586, 687
SduI GDGCHC 4 cut(s) 191, 233, 685, 708
SetI ASST 9 cut(s) 141, 169, 252, 276, 324, 496, 583, 660, 688
SfaNI GCATC 1 cut(s) 730
SfcI CTRYAG 1 cut(s) 737
Sfr303I CCGCGG 1 cut(s) 105
SgrBI CCGCGG 1 cut(s) 105
SmiMI CAYNNNNRTG 1 cut(s) 296
Sse9I AATT 5 cut(s) 21, 282, 471, 498, 535
SspMI CTAG 2 cut(s) 527, 629
StyD4I CCNGG 2 cut(s) 584, 685
StyI CCWWGG 1 cut(s) 297
TaaI ACNGT 1 cut(s) 738
TaiI ACGT 1 cut(s) 252
TaqI TCGA 1 cut(s) 120
TasI AATT 5 cut(s) 21, 282, 471, 498, 535
TfiI GAWTC 3 cut(s) 115, 264, 367
Tru1I TTAA 1 cut(s) 20
Tru9I TTAA 1 cut(s) 20
TscAI CASTG 1 cut(s) 741
TseI GCWGC 1 cut(s) 581
TspDTI ATGAA 1 cut(s) 211
TspGWI ACGGA 3 cut(s) 47, 159, 302
TspRI CASTG 1 cut(s) 741
VneI GTGCAC 1 cut(s) 681
XapI RAATTY 4 cut(s) 282, 471, 498, 535
XmiI GTMKAC 1 cut(s) 252
XmnI GAANNNNTTC 1 cut(s) 657
XspI CTAG 2 cut(s) 527, 629
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.