Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr6

Orthogroup ID

OG0001981

Physical Location & Seq

Genomic Coordinates Forward (+)

18388545 .. 18389948

Gene Structure 1404 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom06g13370.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 444 bp

ATGGCCGGCCTCGTCCGCCAAGACCTCAACCCTCGTTCTTCGCTTTACAAGCAGATTGCGAATGCTGTGAATCGAGGGGAGCTTGTTCCGGAAGAAATCATATTCGGGTTGTTATCGAAGAGATTGGAAGATGGGTATTGCAGAGGAGAAAGTGGATTTATACTGGATGGACTTCCTCGTTCTCGGATTCAAGCCGAAATTCTTTCCGAACTCGTTGAGATTGATCTAGTTGTGAATTTCAAATGCACAGAGCATTGCTTGGCAGAACACGAAAGAGAGGGTGCCTGGAGGGAGAAACTTCGAATCTTTGCTGAGCAGAGTAAGCTGCTGGAAGATTACTACAAGAAACGGGATAAGCTTCTCGACTTTCAAGTGAGTAGTGCACCCGGGGAGACTTGGAAGGGGCTGTTGGCTTCGTTACATCTACGCTCCTCCCTGTTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00230 ko00730 ko01100 ko01110 ko01130 map00230 map00730 map01100 map01110 map01130

Pfam Domains

Protein Families

ADK

Protein Analysis

148

Amino Acids

16.79

Weight (kDa)

5.96

Isoelectric Point (pI)

52.29

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001981)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G01820
fragaria_vesca	FvH4_6g53130
malus_domestica	MD06G1144200.v1.1 MD09G1013900.v1.1 MD09G1014300.v1.1 MD17G1014400.v1.1
prunus_persica	Prupe.3G303400_v2.0.a1
pyrus_communis	pycom06g13370 pycom07g09870
rosa_chinensis	RchiOBHm_Chr2g0175001 RchiOBHm_Chr7g0190491
rosa_laevigata	RLG00000004522 RLG00000010233 RLG00000022307 RLG00000022322
rosa_multiflora	Rmu_co7982852.1_g000001 Rmu_sc0001716.1_g000035 Rmu_sc0003920.1_g000002 Rmu_sc0010642.1_g000002 Rmu_sc0010806.1_g000001 Rmu_sc0014601.1_g000013 Rmu_sc0020514.1_g000002
rosa_roxburghii	Rroxscaffold_2G00077590 Rroxscaffold_3G00264550 Rroxscaffold_7G00211240
rosa_rugosa	Rorug02G0581000 Rorug05G0549400 Rorug06G0504900 Rorug06G0505000 Rorug06G0505000
rosa_samantha	Rh2AG661800 Rh2BG673100 Rh2CG416400 Rh2CG636200 Rh2DG686700 Rh6AG066000 Rh6BG058800 Rh6BG059000 Rh6BG059100 Rh7AG111000 Rh7BG113900 Rh7CG116000 Rh7DG114800
rosa_wichuraiana	Rw2G054250 Rw7G009690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	281
AccIII	TCCGGA	1 cut(s)	88
AciI	CCGC	1 cut(s)	16
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	2 cut(s)	198, 235
AgsI	TTSAA	3 cut(s)	191, 241, 371
AjnI	CCWGG	1 cut(s)	284
AjuI	GAANNNNNNNTTGG	2 cut(s)	392, 424
AluBI	AGCT	3 cut(s)	82, 325, 358
AluI	AGCT	3 cut(s)	82, 325, 358
Alw21I	GWGCWC	1 cut(s)	385
Alw26I	GTCTC	1 cut(s)	386
Alw44I	GTGCAC	1 cut(s)	381
Ama87I	CYCGRG	1 cut(s)	386
Aor13HI	TCCGGA	1 cut(s)	88
AoxI	GGCC	2 cut(s)	3, 7
ApaLI	GTGCAC	1 cut(s)	381
ApeKI	GCWGC	1 cut(s)	325
ApoI	RAATTY	2 cut(s)	198, 235
AsuC2I	CCSGG	2 cut(s)	387, 388
AsuII	TTCGAA	1 cut(s)	301
AvaI	CYCGRG	1 cut(s)	386
BaeGI	GKGCMC	1 cut(s)	385
BanI	GGYRCC	1 cut(s)	281
Bbv12I	GWGCWC	1 cut(s)	385
BbvI	GCAGC	1 cut(s)	312
BccI	CCATC	2 cut(s)	125, 161
BciT130I	CCWGG	1 cut(s)	286
BcnI	CCSGG	2 cut(s)	387, 388
BcoDI	GTCTC	1 cut(s)	386
BfaI	CTAG	1 cut(s)	227
BisI	GCNGC	1 cut(s)	326
BlpI	GCTNAGC	1 cut(s)	312
BlsI	GCNGC	1 cut(s)	327
Bme1390I	CCNGG	3 cut(s)	286, 387, 388
BmeT110I	CYCGRG	1 cut(s)	386
BmiI	GGNNCC	1 cut(s)	283
BmrFI	CCNGG	3 cut(s)	286, 387, 388
BpmI	CTGGAG	1 cut(s)	307
Bpu1102I	GCTNAGC	1 cut(s)	312
Bpu14I	TTCGAA	1 cut(s)	301
BpuMI	CCSGG	2 cut(s)	387, 388
BsaJI	CCNNGG	2 cut(s)	386, 387
BsaWI	WCCGGW	1 cut(s)	88
Bse118I	RCCGGY	1 cut(s)	5
Bse1I	ACTGG	1 cut(s)	168
Bse3DI	GCAATG	1 cut(s)	253
BseAI	TCCGGA	1 cut(s)	88
BseBI	CCWGG	1 cut(s)	286
BseDI	CCNNGG	2 cut(s)	386, 387
BseGI	GGATG	1 cut(s)	172
BseMI	GCAATG	1 cut(s)	253
BseMII	CTCAG	1 cut(s)	303
BseNI	ACTGG	1 cut(s)	168
BseRI	GAGGAG	2 cut(s)	159, 421
BseSI	GKGCMC	1 cut(s)	385
BseXI	GCAGC	1 cut(s)	312
BshFI	GGCC	2 cut(s)	5, 9
BshNI	GGYRCC	1 cut(s)	281
BsiHKAI	GWGCWC	1 cut(s)	385
BsiHKCI	CYCGRG	1 cut(s)	386
BsiSI	CCGG	3 cut(s)	6, 89, 387
BsmAI	GTCTC	1 cut(s)	386
BsmI	GAATGC	1 cut(s)	67
BsnI	GGCC	2 cut(s)	5, 9
BsoBI	CYCGRG	1 cut(s)	386
Bsp119I	TTCGAA	1 cut(s)	301
Bsp1286I	GDGCHC	1 cut(s)	385
Bsp13I	TCCGGA	1 cut(s)	88
Bsp143I	GATC	1 cut(s)	223
Bsp1720I	GCTNAGC	1 cut(s)	312
BspACI	CCGC	1 cut(s)	16
BspANI	GGCC	2 cut(s)	5, 9
BspCNI	CTCAG	1 cut(s)	304
BspEI	TCCGGA	1 cut(s)	88
BspLI	GGNNCC	1 cut(s)	283
BspT104I	TTCGAA	1 cut(s)	301
BspT107I	GGYRCC	1 cut(s)	281
BsrDI	GCAATG	1 cut(s)	253
BsrFI	RCCGGY	1 cut(s)	5
BsrI	ACTGG	1 cut(s)	168
BssAI	RCCGGY	1 cut(s)	5
BssECI	CCNNGG	2 cut(s)	386, 387
BssMI	GATC	1 cut(s)	223
Bst2UI	CCWGG	1 cut(s)	286
Bst6I	CTCTTC	1 cut(s)	113
BstBI	TTCGAA	1 cut(s)	301
BstC8I	GCNNGC	1 cut(s)	7
BstDEI	CTNAG	1 cut(s)	312
BstF5I	GGATG	1 cut(s)	172
BstKTI	GATC	1 cut(s)	226
BstMAI	GTCTC	1 cut(s)	386
BstMBI	GATC	1 cut(s)	223
BstMWI	GCNNNNNNNGC	3 cut(s)	15, 49, 322
BstNI	CCWGG	1 cut(s)	286
BstSCI	CCNGG	3 cut(s)	284, 385, 386
BstSLI	GKGCMC	1 cut(s)	385
BstV1I	GCAGC	1 cut(s)	312
BsuRI	GGCC	2 cut(s)	5, 9
BtsCI	GGATG	1 cut(s)	172
Cac8I	GCNNGC	1 cut(s)	7
Cfr10I	RCCGGY	1 cut(s)	5
Cfr9I	CCCGGG	1 cut(s)	386
CviJI	RGCY	8 cut(s)	5, 9, 82, 194, 325, 358, 406, 413
CviKI_1	RGCY	8 cut(s)	5, 9, 82, 194, 325, 358, 406, 413
DdeI	CTNAG	1 cut(s)	312
DpnI	GATC	1 cut(s)	225
DpnII	GATC	1 cut(s)	223
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	1 cut(s)	113
EarI	CTCTTC	1 cut(s)	113
EciI	GGCGGA	1 cut(s)	5
Eco88I	CYCGRG	1 cut(s)	386
EcoRII	CCWGG	1 cut(s)	284
FaiI	YATR	2 cut(s)	101, 161
Fnu4HI	GCNGC	1 cut(s)	326
FokI	GGATG	1 cut(s)	179
FseI	GGCCGGCC	1 cut(s)	9
Fsp4HI	GCNGC	1 cut(s)	326
FspBI	CTAG	1 cut(s)	227
GluI	GCNGC	1 cut(s)	326
GsuI	CTGGAG	1 cut(s)	307
HaeIII	GGCC	2 cut(s)	5, 9
HapII	CCGG	3 cut(s)	6, 89, 387
HindIII	AAGCTT	1 cut(s)	356
HinfI	GANTC	3 cut(s)	70, 187, 303
HpaII	CCGG	3 cut(s)	6, 89, 387
Hpy166II	GTNNAC	1 cut(s)	383
Hpy188I	TCNGA	2 cut(s)	186, 208
Hpy188III	TCNNGA	2 cut(s)	89, 362
Hpy8I	GTNNAC	1 cut(s)	383
HpyAV	CCTTC	1 cut(s)	394
HpyCH4V	TGCA	3 cut(s)	141, 246, 383
HpyF10VI	GCNNNNNNNGC	3 cut(s)	15, 49, 322
HpyF3I	CTNAG	1 cut(s)	312
Kpn2I	TCCGGA	1 cut(s)	88
KroI	GCCGGC	1 cut(s)	5
KroNI	GCCGGC	1 cut(s)	7
Kzo9I	GATC	1 cut(s)	223
LmnI	GCTCC	2 cut(s)	79, 434
LpnPI	CCDG	7 cut(s)	19, 102, 149, 271, 298, 314, 400
Lsp1109I	GCAGC	1 cut(s)	312
MaeI	CTAG	1 cut(s)	227
MaeIII	GTNAC	1 cut(s)	417
MalI	GATC	1 cut(s)	225
MboI	GATC	1 cut(s)	223
MboII	GAAGA	5 cut(s)	30, 104, 130, 140, 344
MhlI	GDGCHC	1 cut(s)	385
MluCI	AATT	2 cut(s)	198, 235
MnlI	CCTC	9 cut(s)	20, 35, 42, 68, 137, 186, 271, 282, 442
MroI	TCCGGA	1 cut(s)	88
MroNI	GCCGGC	1 cut(s)	5
MspI	CCGG	3 cut(s)	6, 89, 387
MspR9I	CCNGG	3 cut(s)	286, 387, 388
Mva1269I	GAATGC	1 cut(s)	67
MvaI	CCWGG	1 cut(s)	286
MwoI	GCNNNNNNNGC	3 cut(s)	15, 49, 322
NaeI	GCCGGC	1 cut(s)	7
NciI	CCSGG	2 cut(s)	387, 388
NdeII	GATC	1 cut(s)	223
NgoMIV	GCCGGC	1 cut(s)	5
NlaIV	GGNNCC	1 cut(s)	283
NspV	TTCGAA	1 cut(s)	301
PctI	GAATGC	1 cut(s)	67
PdiI	GCCGGC	1 cut(s)	7
PfeI	GAWTC	3 cut(s)	70, 187, 303
PkrI	GCNGC	1 cut(s)	327
Psp6I	CCWGG	1 cut(s)	284
PspGI	CCWGG	1 cut(s)	284
PspN4I	GGNNCC	1 cut(s)	283
RigI	GGCCGGCC	1 cut(s)	9
SatI	GCNGC	1 cut(s)	326
Sau3AI	GATC	1 cut(s)	223
ScrFI	CCNGG	3 cut(s)	286, 387, 388
SduI	GDGCHC	1 cut(s)	385
SetI	ASST	4 cut(s)	27, 84, 327, 360
SfuI	TTCGAA	1 cut(s)	301
SmaI	CCCGGG	1 cut(s)	388
Sse9I	AATT	2 cut(s)	198, 235
SsiI	CCGC	1 cut(s)	16
SspMI	CTAG	1 cut(s)	227
StyD4I	CCNGG	3 cut(s)	284, 385, 386
TaqI	TCGA	4 cut(s)	73, 116, 301, 363
TasI	AATT	2 cut(s)	198, 235
TfiI	GAWTC	3 cut(s)	70, 187, 303
TseI	GCWGC	1 cut(s)	325
TspMI	CCCGGG	1 cut(s)	386
VneI	GTGCAC	1 cut(s)	381
XapI	RAATTY	2 cut(s)	198, 235
XmaI	CCCGGG	1 cut(s)	386
XspI	CTAG	1 cut(s)	227

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.