Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr09

Orthogroup ID

OG0001981

Physical Location & Seq

Genomic Coordinates Forward (+)

912308 .. 913565

Gene Structure 1258 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD09G1014300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 429 bp

ATGCTGGACTCGGACGGGTGGGTCCCGGGAAGAGGTGTGCAGTGGGTGCTGATCGGAGACAGAGGCGCGAAAAAGCACTTGTACGCCGACAGGCTCTCGAAGCTGCTGGAAGTTCCGCACATTTCTACGGGATCCCTCTTCCGCCAGGAGCTCAACCCTCGCTCTTCTCTCTATGGGATCCCTCTTGCGAATGCAGTGAATGAAAGGAAGCTTGTCCCGGACGAAGTGATATTTGCGTTGTTGTCGAAGAGGTTGGAAGAAGGATGCTATCGCGGCGAAAACGGGTTCATCCTCGATGGGATTCCTCGAGCAAGAGCTCAAGCTGAGATTGTTGATCAAATTGCTGATATTGATTTAGTGGTGAATTTGAAACGCACAAATGAGCACTTGGTGAAGAAGAATCTAGGAACCCGAAACTTCTCTGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00230 ko00730 ko01100 ko01110 ko01130 map00230 map00730 map01100 map01110 map01130

Pfam Domains

Protein Families

ADK

Protein Analysis

143

Amino Acids

15.87

Weight (kDa)

8.79

Isoelectric Point (pI)

18.5

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ADK	PF00406	17 - 133	4e-20	Adenylate kinase
AAA_17	PF13207	28 - 137	2.3e-12	AAA domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001981)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G01820
fragaria_vesca	FvH4_6g53130
malus_domestica	MD06G1144200.v1.1 MD09G1013900.v1.1 MD09G1014300.v1.1 MD17G1014400.v1.1
prunus_persica	Prupe.3G303400_v2.0.a1
pyrus_communis	pycom06g13370 pycom07g09870
rosa_chinensis	RchiOBHm_Chr2g0175001 RchiOBHm_Chr7g0190491
rosa_laevigata	RLG00000004522 RLG00000010233 RLG00000022307 RLG00000022322
rosa_multiflora	Rmu_co7982852.1_g000001 Rmu_sc0001716.1_g000035 Rmu_sc0003920.1_g000002 Rmu_sc0010642.1_g000002 Rmu_sc0010806.1_g000001 Rmu_sc0014601.1_g000013 Rmu_sc0020514.1_g000002
rosa_roxburghii	Rroxscaffold_2G00077590 Rroxscaffold_3G00264550 Rroxscaffold_7G00211240
rosa_rugosa	Rorug02G0581000 Rorug05G0549400 Rorug06G0504900 Rorug06G0505000 Rorug06G0505000
rosa_samantha	Rh2AG661800 Rh2BG673100 Rh2CG416400 Rh2CG636200 Rh2DG686700 Rh6AG066000 Rh6BG058800 Rh6BG059000 Rh6BG059100 Rh7AG111000 Rh7BG113900 Rh7CG116000 Rh7DG114800
rosa_wichuraiana	Rw2G054250 Rw7G009690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	20
AccII	CGCG	2 cut(s)	68, 273
AciI	CCGC	3 cut(s)	116, 142, 273
AclWI	GGATC	4 cut(s)	126, 139, 172, 185
AcsI	RAATTY	1 cut(s)	364
AdeI	CACNNNGTG	1 cut(s)	391
AfaI	GTAC	1 cut(s)	83
AfiI	CCNNNNNNNGG	1 cut(s)	32
AgsI	TTSAA	1 cut(s)	370
AjnI	CCWGG	1 cut(s)	144
AluBI	AGCT	5 cut(s)	103, 151, 211, 317, 323
AluI	AGCT	5 cut(s)	103, 151, 211, 317, 323
Alw21I	GWGCWC	3 cut(s)	153, 319, 387
Alw26I	GTCTC	1 cut(s)	51
AlwI	GGATC	4 cut(s)	126, 139, 172, 185
Ama87I	CYCGRG	2 cut(s)	25, 306
ApeKI	GCWGC	1 cut(s)	103
ApoI	RAATTY	1 cut(s)	364
AspLEI	GCGC	1 cut(s)	68
AspS9I	GGNCC	1 cut(s)	22
AsuC2I	CCSGG	3 cut(s)	26, 27, 218
AsuHPI	GGTGA	2 cut(s)	373, 403
AvaI	CYCGRG	2 cut(s)	25, 306
AvaII	GGWCC	1 cut(s)	22
BamHI	GGATCC	2 cut(s)	131, 177
BanII	GRGCYC	2 cut(s)	153, 319
Bbv12I	GWGCWC	3 cut(s)	153, 319, 387
BbvI	GCAGC	1 cut(s)	90
BccI	CCATC	1 cut(s)	290
BciT130I	CCWGG	1 cut(s)	146
BclI	TGATCA	1 cut(s)	334
BcnI	CCSGG	3 cut(s)	26, 27, 218
BcoDI	GTCTC	1 cut(s)	51
BfaI	CTAG	1 cut(s)	404
BisI	GCNGC	2 cut(s)	104, 274
BlsI	GCNGC	2 cut(s)	105, 275
Bme1390I	CCNGG	4 cut(s)	26, 27, 146, 218
Bme18I	GGWCC	1 cut(s)	22
BmeT110I	CYCGRG	2 cut(s)	25, 306
BmgT120I	GGNCC	1 cut(s)	22
BmiI	GGNNCC	5 cut(s)	23, 24, 133, 179, 409
BmrFI	CCNGG	4 cut(s)	26, 27, 146, 218
BmsI	GCATC	1 cut(s)	254
BpuEI	CTTGAG	1 cut(s)	303
BpuMI	CCSGG	3 cut(s)	26, 27, 218
BsaJI	CCNNGG	1 cut(s)	25
Bsc4I	CCNNNNNNNGG	1 cut(s)	32
BseBI	CCWGG	1 cut(s)	146
BseDI	CCNNGG	1 cut(s)	25
BseGI	GGATG	2 cut(s)	269, 288
BseLI	CCNNNNNNNGG	1 cut(s)	32
BseMII	CTCAG	1 cut(s)	315
BseXI	GCAGC	1 cut(s)	90
BsgI	GTGCAG	1 cut(s)	59
Bsh1236I	CGCG	2 cut(s)	68, 273
BsiHKAI	GWGCWC	3 cut(s)	153, 319, 387
BsiHKCI	CYCGRG	2 cut(s)	25, 306
BsiSI	CCGG	2 cut(s)	26, 218
BslFI	GGGAC	2 cut(s)	8, 200
BslI	CCNNNNNNNGG	1 cut(s)	32
BsmAI	GTCTC	1 cut(s)	51
BsmFI	GGGAC	2 cut(s)	8, 200
BsmI	GAATGC	1 cut(s)	196
BsoBI	CYCGRG	2 cut(s)	25, 306
Bsp1286I	GDGCHC	3 cut(s)	153, 319, 387
Bsp143I	GATC	4 cut(s)	51, 131, 177, 334
BspACI	CCGC	3 cut(s)	116, 142, 273
BspCNI	CTCAG	1 cut(s)	316
BspFNI	CGCG	2 cut(s)	68, 273
BspLI	GGNNCC	5 cut(s)	23, 24, 133, 179, 409
BspPI	GGATC	4 cut(s)	126, 139, 172, 185
BspQI	GCTCTTC	1 cut(s)	169
BssECI	CCNNGG	1 cut(s)	25
BssMI	GATC	4 cut(s)	51, 131, 177, 334
Bst2UI	CCWGG	1 cut(s)	146
Bst6I	CTCTTC	4 cut(s)	25, 143, 169, 242
BstAPI	GCANNNNNTGC	1 cut(s)	46
BstDEI	CTNAG	1 cut(s)	324
BstF5I	GGATG	2 cut(s)	269, 288
BstFNI	CGCG	2 cut(s)	68, 273
BstHHI	GCGC	1 cut(s)	68
BstKTI	GATC	4 cut(s)	54, 134, 180, 337
BstMAI	GTCTC	1 cut(s)	51
BstMBI	GATC	4 cut(s)	51, 131, 177, 334
BstMWI	GCNNNNNNNGC	3 cut(s)	46, 100, 273
BstNI	CCWGG	1 cut(s)	146
BstSCI	CCNGG	4 cut(s)	24, 25, 144, 216
BstUI	CGCG	2 cut(s)	68, 273
BstV1I	GCAGC	1 cut(s)	90
BstX2I	RGATCY	2 cut(s)	131, 177
BstYI	RGATCY	2 cut(s)	131, 177
BtsCI	GGATG	2 cut(s)	269, 288
BtsI	GCAGTG	2 cut(s)	47, 201
BtsIMutI	CAGTG	2 cut(s)	47, 201
CfoI	GCGC	1 cut(s)	68
Cfr13I	GGNCC	1 cut(s)	22
Cfr9I	CCCGGG	1 cut(s)	25
Csp6I	GTAC	1 cut(s)	82
CviJI	RGCY	6 cut(s)	94, 103, 151, 211, 317, 323
CviKI_1	RGCY	6 cut(s)	94, 103, 151, 211, 317, 323
CviQI	GTAC	1 cut(s)	82
DdeI	CTNAG	1 cut(s)	324
DpnI	GATC	4 cut(s)	53, 133, 179, 336
DpnII	GATC	4 cut(s)	51, 131, 177, 334
DraIII	CACNNNGTG	1 cut(s)	391
DrdI	GACNNNNNNGTC	1 cut(s)	20
DseDI	GACNNNNNNGTC	1 cut(s)	20
Eam1104I	CTCTTC	4 cut(s)	25, 143, 169, 242
EarI	CTCTTC	4 cut(s)	25, 143, 169, 242
EciI	GGCGGA	1 cut(s)	131
Ecl136II	GAGCTC	2 cut(s)	151, 317
Eco24I	GRGCYC	2 cut(s)	153, 319
Eco47I	GGWCC	1 cut(s)	22
Eco53kI	GAGCTC	2 cut(s)	151, 317
Eco88I	CYCGRG	2 cut(s)	25, 306
EcoICRI	GAGCTC	2 cut(s)	151, 317
EcoO109I	RGGNCCY	1 cut(s)	22
EcoRII	CCWGG	1 cut(s)	144
EcoT38I	GRGCYC	2 cut(s)	153, 319
FaiI	YATR	1 cut(s)	174
FaqI	GGGAC	2 cut(s)	8, 200
FbaI	TGATCA	1 cut(s)	334
Fnu4HI	GCNGC	2 cut(s)	104, 274
FokI	GGATG	2 cut(s)	275, 276
FriOI	GRGCYC	2 cut(s)	153, 319
Fsp4HI	GCNGC	2 cut(s)	104, 274
FspBI	CTAG	1 cut(s)	404
GlaI	GCGC	1 cut(s)	67
GluI	GCNGC	2 cut(s)	104, 274
HapII	CCGG	2 cut(s)	26, 218
HhaI	GCGC	1 cut(s)	68
Hin6I	GCGC	1 cut(s)	66
HinP1I	GCGC	1 cut(s)	66
HindIII	AAGCTT	1 cut(s)	209
HinfI	GANTC	3 cut(s)	8, 301, 400
HpaII	CCGG	2 cut(s)	26, 218
HphI	GGTGA	2 cut(s)	373, 403
Hpy188I	TCNGA	2 cut(s)	13, 56
Hpy188III	TCNNGA	1 cut(s)	97
HpyAV	CCTTC	1 cut(s)	254
HpyCH4V	TGCA	2 cut(s)	40, 194
HpyF10VI	GCNNNNNNNGC	3 cut(s)	46, 100, 273
HpyF3I	CTNAG	1 cut(s)	324
HspAI	GCGC	1 cut(s)	66
KflI	GGGWCCC	1 cut(s)	22
Ksp22I	TGATCA	1 cut(s)	334
Kzo9I	GATC	4 cut(s)	51, 131, 177, 334
LguI	GCTCTTC	1 cut(s)	169
LmnI	GCTCC	1 cut(s)	148
LpnPI	CCDG	6 cut(s)	39, 76, 92, 131, 158, 231
Lsp1109I	GCAGC	1 cut(s)	90
LweI	GCATC	1 cut(s)	254
MaeI	CTAG	1 cut(s)	404
MalI	GATC	4 cut(s)	53, 133, 179, 336
MboI	GATC	4 cut(s)	51, 131, 177, 334
MboII	GAAGA	7 cut(s)	42, 130, 156, 259, 269, 406, 409
MflI	RGATCY	2 cut(s)	131, 177
MhlI	GDGCHC	3 cut(s)	153, 319, 387
MluCI	AATT	2 cut(s)	339, 364
MlyI	GAGTC	1 cut(s)	2
MmeI	TCCRAC	1 cut(s)	234
MnlI	CCTC	8 cut(s)	26, 56, 146, 168, 192, 243, 302, 315
MseI	TTAA	1 cut(s)	427
MspI	CCGG	2 cut(s)	26, 218
MspR9I	CCNGG	4 cut(s)	26, 27, 146, 218
Mva1269I	GAATGC	1 cut(s)	196
MvaI	CCWGG	1 cut(s)	146
MvnI	CGCG	2 cut(s)	68, 273
MwoI	GCNNNNNNNGC	3 cut(s)	46, 100, 273
NciI	CCSGG	3 cut(s)	26, 27, 218
NdeII	GATC	4 cut(s)	51, 131, 177, 334
NlaIV	GGNNCC	5 cut(s)	23, 24, 133, 179, 409
PaeR7I	CTCGAG	1 cut(s)	306
PciSI	GCTCTTC	1 cut(s)	169
PctI	GAATGC	1 cut(s)	196
PfeI	GAWTC	2 cut(s)	301, 400
PfoI	TCCNGGA	1 cut(s)	216
PkrI	GCNGC	2 cut(s)	105, 275
PleI	GAGTC	1 cut(s)	2
PpsI	GAGTC	1 cut(s)	2
PpuMI	RGGWCCY	1 cut(s)	22
Psp124BI	GAGCTC	2 cut(s)	153, 319
Psp5II	RGGWCCY	1 cut(s)	22
Psp6I	CCWGG	1 cut(s)	144
PspGI	CCWGG	1 cut(s)	144
PspN4I	GGNNCC	5 cut(s)	23, 24, 133, 179, 409
PspPI	GGNCC	1 cut(s)	22
PspPPI	RGGWCCY	1 cut(s)	22
PspXI	VCTCGAGB	1 cut(s)	306
PsuI	RGATCY	2 cut(s)	131, 177
RsaI	GTAC	1 cut(s)	83
RsaNI	GTAC	1 cut(s)	82
SacI	GAGCTC	2 cut(s)	153, 319
SapI	GCTCTTC	1 cut(s)	169
SaqAI	TTAA	1 cut(s)	427
SatI	GCNGC	2 cut(s)	104, 274
Sau3AI	GATC	4 cut(s)	51, 131, 177, 334
Sau96I	GGNCC	1 cut(s)	22
SchI	GAGTC	1 cut(s)	2
ScrFI	CCNGG	4 cut(s)	26, 27, 146, 218
SduI	GDGCHC	3 cut(s)	153, 319, 387
SetI	ASST	7 cut(s)	37, 105, 153, 213, 254, 319, 325
SfaNI	GCATC	1 cut(s)	254
Sfr274I	CTCGAG	1 cut(s)	306
SinI	GGWCC	1 cut(s)	22
SlaI	CTCGAG	1 cut(s)	306
SmaI	CCCGGG	1 cut(s)	27
SmlI	CTYRAG	2 cut(s)	306, 318
SmoI	CTYRAG	2 cut(s)	306, 318
Sse9I	AATT	2 cut(s)	339, 364
SsiI	CCGC	3 cut(s)	116, 142, 273
SspMI	CTAG	1 cut(s)	404
SstI	GAGCTC	2 cut(s)	153, 319
StyD4I	CCNGG	4 cut(s)	24, 25, 144, 216
TaqI	TCGA	4 cut(s)	98, 245, 294, 307
TasI	AATT	2 cut(s)	339, 364
TauI	GCSGC	1 cut(s)	276
TfiI	GAWTC	2 cut(s)	301, 400
Tru1I	TTAA	1 cut(s)	427
Tru9I	TTAA	1 cut(s)	427
TscAI	CASTG	2 cut(s)	47, 201
TseI	GCWGC	1 cut(s)	103
TspDTI	ATGAA	2 cut(s)	216, 277
TspMI	CCCGGG	1 cut(s)	25
TspRI	CASTG	2 cut(s)	47, 201
VpaK11BI	GGWCC	1 cut(s)	22
XapI	RAATTY	1 cut(s)	364
XhoI	CTCGAG	1 cut(s)	306
XmaI	CCCGGG	1 cut(s)	25
XspI	CTAG	1 cut(s)	404

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.